LOCUS       NM_029408               1648 bp    mRNA    linear   ROD 12-JUN-2024
DEFINITION  Mus musculus IQ motif containing D (Iqcd), mRNA.
ACCESSION   NM_029408
VERSION     NM_029408.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1648)
  AUTHORS   Perelygin,A.A., Scherbik,S.V., Zhulin,I.B., Stockman,B.M., Li,Y.
            and Brinton,M.A.
  TITLE     Positional cloning of the murine flavivirus resistance gene
  JOURNAL   Proc Natl Acad Sci U S A 99 (14), 9322-9327 (2002)
   PUBMED   12080145
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC125183.4.
            
            On Mar 14, 2022 this sequence version replaced NM_029408.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK017032.1, BC137644.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384, SAMN01164131
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-45                AC125183.4         122172-122216       c
            46-856              AC125183.4         110428-111238       c
            857-1090            AC125183.4         108707-108940       c
            1091-1162           AC125183.4         106066-106137       c
            1163-1648           AC125183.4         104146-104631       c
FEATURES             Location/Qualifiers
     source          1..1648
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="5"
                     /map="5 60.63 cM"
     gene            1..1648
                     /gene="Iqcd"
                     /gene_synonym="4933433C09Rik"
                     /note="IQ motif containing D"
                     /db_xref="GeneID:75732"
                     /db_xref="MGI:MGI:1922982"
     exon            1..45
                     /gene="Iqcd"
                     /gene_synonym="4933433C09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            46..856
                     /gene="Iqcd"
                     /gene_synonym="4933433C09Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             137..1513
                     /gene="Iqcd"
                     /gene_synonym="4933433C09Rik"
                     /note="IQ domain-containing protein D"
                     /codon_start=1
                     /product="dynein regulatory complex protein 10"
                     /protein_id="NP_083684.1"
                     /db_xref="CCDS:CCDS19621.1"
                     /db_xref="GeneID:75732"
                     /db_xref="MGI:MGI:1922982"
                     /translation="MALDQVSIPPSYHGLAIQRIPLRTGLVPAEPMKTLVPSKSKLNT
                     IEAKRIMSVLDEAIHKIELITLMSYMESHPEALEDTLPEDFVRALREHLDIGQTLVER
                     ASILQRRHKKLEEEEEAEETRNQERLLSLELHKVNLLTLAHQFRDSTKTVLRLVLGEP
                     QFTRLLQVQAPGRSPGAQCLLDGLVELRGFLFEKLLTSPMEVREKNQFIQDISRRSER
                     NQEVIDDLQAELANVLKNKESEVEKENFVIQELKNHLHQVFKFSENSLLRTKQEAEKQ
                     QKVDFRASQVRLAKTQQDILALRAQYHNLVMENREAEQALRKKKYKVETEIENWIQKY
                     DMEMGEKQDEYEDLESIHKEEKLQLEELRERHAVLVEEFSQIRAESEINSKKRVEAER
                     EMVRMVRAATLIQAVWKGYLVRSILRSKKKKRGKGKGKDKGKGKEKPKEEKAKEKKPK
                     AKGKGKKK"
     exon            857..1090
                     /gene="Iqcd"
                     /gene_synonym="4933433C09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1091..1162
                     /gene="Iqcd"
                     /gene_synonym="4933433C09Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1163..1648
                     /gene="Iqcd"
                     /gene_synonym="4933433C09Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1626..1631
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Iqcd"
                     /gene_synonym="4933433C09Rik"
                     /note="hexamer: ATTAAA"
     polyA_site      1648
                     /gene="Iqcd"
                     /gene_synonym="4933433C09Rik"
                     /note="major polyA site"
ORIGIN      
        1 gagttgctta actgtgggcc aagaaacttg catcttgagg agctgggtta ctggaggctg
       61 tgaaatccag gagagccttg agttggcggc tgcctcagta ccagattata ccgaggcaaa
      121 ggcagcctct ccagaaatgg ccttggacca ggtcagcata cccccttcct accacggact
      181 ggccatccaa agaatcccac tgagaacagg tctagtccca gcagagccga tgaagacctt
      241 agtcccatcc aaatccaagc tcaacaccat cgaggccaag aggatcatgt cagtcctgga
      301 tgaggccata cacaagatag agctgataac cctgatgtcc tacatggagt cccacccaga
      361 ggctctggag gacacgctgc ccgaggattt cgtgagagcc ctaagagagc acttggacat
      421 tggccagacc ctggtggaga gggccagcat cctgcagagg agacacaaga agctggagga
      481 agaggaagaa gccgaggaaa ctaggaacca ggaacgccta ctgtccctag agctgcacaa
      541 ggtgaacctg ctgacgctgg cgcaccagtt ccgagactcc accaagactg tcctgaggct
      601 cgtgctgggc gagcctcagt tcaccaggct gttacaggta caggcgccag gcagaagccc
      661 gggggcccag tgcctcctcg acggtctggt ggagcttcga ggtttcctct ttgagaagct
      721 cctcaccagc cccatggaag tcagggagaa gaaccaattc atacaggaca tcagccggag
      781 gagcgagagg aaccaggagg tcatcgatga cctccaggct gagctggcca acgtgctgaa
      841 gaacaaggag tcagaggtgg agaaggagaa ctttgtgatc caggagctga agaaccatct
      901 gcaccaggtg ttcaagtttt cggagaacag cctcctccgc acgaagcagg aggccgagaa
      961 gcagcagaag gtggatttcc gggcctccca ggtcaggctg gccaagacgc agcaagatat
     1021 cctggcgctt cgggcacagt accacaacct ggtcatggag aaccgggagg cagagcaggc
     1081 actaaggaag aaaaaataca aagtggagac agaaatcgag aactggatcc agaaatatga
     1141 catggagatg ggcgagaagc aggacgaata cgaggacctg gagagcatcc acaaggagga
     1201 gaagctgcag ctggaggagc tgagggaaag gcacgcggtg ctggtggagg agttctctca
     1261 gatccgggcc gagagcgaga tcaattccaa gaagcgggtg gaggcagagc gcgagatggt
     1321 gcgcatggtg agagccgcca cgctcatcca ggcggtgtgg aagggctacc tggtgcgctc
     1381 catactcagg tccaagaaga agaagcgggg caaggggaag ggcaaagaca aggggaaggg
     1441 caaggagaag cccaaggaag aaaaggccaa ggagaagaaa cccaaggcca agggcaaagg
     1501 caagaagaag tgaccacatc ctggtctggc cccgcccctg ttcagcttcc accacgccct
     1561 accgggtccc aaccaagccc ctgttctgtc ccagcccttc catccctggc tttaatgatg
     1621 gctaaattaa aaaagacaaa caacaaaa
//
