LOCUS       NM_177676               2670 bp    mRNA    linear   ROD 30-JUL-2024
DEFINITION  Mus musculus IQ motif containing with AAA domain 1 like (Iqca1l),
            transcript variant 1, mRNA.
ACCESSION   NM_177676
VERSION     NM_177676.6
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2670)
  AUTHORS   Sharov,A.A., Piao,Y., Matoba,R., Dudekula,D.B., Qian,Y.,
            VanBuren,V., Falco,G., Martin,P.R., Stagg,C.A., Bassey,U.C.,
            Wang,Y., Carter,M.G., Hamatani,T., Aiba,K., Akutsu,H., Sharova,L.,
            Tanaka,T.S., Kimber,W.L., Yoshikawa,T., Jaradat,S.A., Pantano,S.,
            Nagaraja,R., Boheler,K.R., Taub,D., Hodes,R.J., Longo,D.L.,
            Schlessinger,D., Keller,J., Klotz,E., Kelsoe,G., Umezawa,A.,
            Vescovi,A.L., Rossant,J., Kunath,T., Hogan,B.L., Curci,A.,
            D'Urso,M., Kelso,J., Hide,W. and Ko,M.S.
  TITLE     Transcriptome analysis of mouse stem cells and early embryos
  JOURNAL   PLoS Biol 1 (3), E74 (2003)
   PUBMED   14691545
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CN725168.1,
            AK029839.1, BC145792.1 and AV271477.2.
            
            On Dec 31, 2009 this sequence version replaced NM_177676.5.
            
            Transcript Variant: This variant (1) represents the shorter
            transcript and encodes the functional protein.
            
            Sequence Note: The RefSeq transcript and protein are supported by
            partial mouse transcripts, including BB014552.1, and alignment to
            paralogous proteins including human NP_079002.3.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMN00849384
                              [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-196               CN725168.1         1-196
            197-732             AK029839.1         139-674
            733-1010            AK029839.1         773-1050
            1011-2652           BC145792.1         734-2375
            2653-2670           AV271477.2         599-616
FEATURES             Location/Qualifiers
     source          1..2670
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="5"
                     /map="5 11.93 cM"
     gene            1..2670
                     /gene="Iqca1l"
                     /gene_synonym="4931409K22Rik; Iqca1p1"
                     /note="IQ motif containing with AAA domain 1 like"
                     /db_xref="GeneID:231045"
                     /db_xref="MGI:MGI:3045319"
     exon            1..98
                     /gene="Iqca1l"
                     /gene_synonym="4931409K22Rik; Iqca1p1"
                     /inference="alignment:Splign:2.1.0"
     CDS             88..2565
                     /gene="Iqca1l"
                     /gene_synonym="4931409K22Rik; Iqca1p1"
                     /codon_start=1
                     /product="IQ and AAA domain-containing protein 1-like"
                     /protein_id="NP_808344.3"
                     /db_xref="CCDS:CCDS51435.1"
                     /db_xref="GeneID:231045"
                     /db_xref="MGI:MGI:3045319"
                     /translation="MSEGTYQRLWEASHVTLEEVLEKEPSVLEPVPSRERQSFQYRIS
                     VLYLYYLGLLRRFNLAYDQMVQPQKRRLLRRLLDGVAGRVLELKDELVRVDLCETHCL
                     DRVLQDLKLTPADLEVPIPKYFQLEQSSAVKARQQMLADILNRLEPLVSQENLRGLSR
                     TAALILVQSAERARQGRLRATFMREIRKEEERDRRIWENGQQKFSRDQGAIVIQKVWK
                     GYLQRKRIEQDRRVEMEFIGMLPSPNQTARLNTLNQAFLGEESRRMRQVEKEEEFQEA
                     IGKTYESLTETEGPDMKERMKDQIRQWFIECHALTGRFPDYPDEASGGSYLIFADKTP
                     EQVRLDLEAQAQESRKKDQEKKEKNKEKEKEKKEKKKKKVKEEKVKKEPEVMFRVLPS
                     KSIPVINAGHEEYTSVWKSRYDNKHPSQNFDSETLREEKRKQVEMEIRVQVDELMRQE
                     LKNLRLAVDREETRPLKSPKKKGGKKSGKKKKEKDLTPDRSVDSLFEELVIIGLIKKS
                     ALVTLSDYIGDCLYLGSTLTLANKMPMPSLFDIRQNMALYGVLRLGSHDIHTMAPLVR
                     SILLVGPSGMGKKMLVQAVCTETGANLFDLSPDNLMGKYPGKNGAQLLVHIVFKVARL
                     LQPSVIWIGNTEKTFYKKVPKEERTMDPKRIKKDLMRATKQLSPGDRVMLIGTTERPQ
                     LAEMKGLCRFYERILFIPRPDYASRYVLWKRMIESQGRGVQLTSSLDVSALARVSDGY
                     TPSHILQSIQSVLTERRLLQLIKKPLVASEFVGHLARLDPVYREEEESLKEWFFKTPL
                     GKKNMKFTKDQLEAEEARLTKEKKKKK"
     exon            99..426
                     /gene="Iqca1l"
                     /gene_synonym="4931409K22Rik; Iqca1p1"
                     /inference="alignment:Splign:2.1.0"
     exon            427..546
                     /gene="Iqca1l"
                     /gene_synonym="4931409K22Rik; Iqca1p1"
                     /inference="alignment:Splign:2.1.0"
     exon            547..732
                     /gene="Iqca1l"
                     /gene_synonym="4931409K22Rik; Iqca1p1"
                     /inference="alignment:Splign:2.1.0"
     exon            733..804
                     /gene="Iqca1l"
                     /gene_synonym="4931409K22Rik; Iqca1p1"
                     /inference="alignment:Splign:2.1.0"
     exon            805..1010
                     /gene="Iqca1l"
                     /gene_synonym="4931409K22Rik; Iqca1p1"
                     /inference="alignment:Splign:2.1.0"
     exon            1011..1095
                     /gene="Iqca1l"
                     /gene_synonym="4931409K22Rik; Iqca1p1"
                     /inference="alignment:Splign:2.1.0"
     exon            1096..1230
                     /gene="Iqca1l"
                     /gene_synonym="4931409K22Rik; Iqca1p1"
                     /inference="alignment:Splign:2.1.0"
     exon            1231..1306
                     /gene="Iqca1l"
                     /gene_synonym="4931409K22Rik; Iqca1p1"
                     /inference="alignment:Splign:2.1.0"
     exon            1307..1413
                     /gene="Iqca1l"
                     /gene_synonym="4931409K22Rik; Iqca1p1"
                     /inference="alignment:Splign:2.1.0"
     exon            1414..1497
                     /gene="Iqca1l"
                     /gene_synonym="4931409K22Rik; Iqca1p1"
                     /inference="alignment:Splign:2.1.0"
     exon            1498..1556
                     /gene="Iqca1l"
                     /gene_synonym="4931409K22Rik; Iqca1p1"
                     /inference="alignment:Splign:2.1.0"
     exon            1557..1639
                     /gene="Iqca1l"
                     /gene_synonym="4931409K22Rik; Iqca1p1"
                     /inference="alignment:Splign:2.1.0"
     exon            1640..1747
                     /gene="Iqca1l"
                     /gene_synonym="4931409K22Rik; Iqca1p1"
                     /inference="alignment:Splign:2.1.0"
     exon            1748..1947
                     /gene="Iqca1l"
                     /gene_synonym="4931409K22Rik; Iqca1p1"
                     /inference="alignment:Splign:2.1.0"
     exon            1948..2034
                     /gene="Iqca1l"
                     /gene_synonym="4931409K22Rik; Iqca1p1"
                     /inference="alignment:Splign:2.1.0"
     exon            2035..2212
                     /gene="Iqca1l"
                     /gene_synonym="4931409K22Rik; Iqca1p1"
                     /inference="alignment:Splign:2.1.0"
     exon            2213..2457
                     /gene="Iqca1l"
                     /gene_synonym="4931409K22Rik; Iqca1p1"
                     /inference="alignment:Splign:2.1.0"
     exon            2458..2670
                     /gene="Iqca1l"
                     /gene_synonym="4931409K22Rik; Iqca1p1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gaattcttca aaccaaactg ttccgcctct tgcttaactt ctgggggttc caccaactca
       61 caacgggcat tgagaggtga aggcaccatg tctgagggaa cttaccaacg cctctgggag
      121 gcctcccacg tgactctcga agaggtgctg gaaaaagagc catctgtgct cgaacctgtg
      181 cccagccgag agcggcagag cttccagtac aggatctccg tgctttacct gtactacctg
      241 gggctgctgc gccgcttcaa cctggcctac gaccagatgg tacagccaca gaagcgtcgg
      301 ttgctgcggc gccttctgga cggtgtggcg ggacgtgtac tggagctcaa ggacgagcta
      361 gtgcgcgttg acctgtgcga gacccactgc ctggaccgag tactgcagga tctcaagctg
      421 accccggcag acctggaggt tcccatcccc aaatattttc agctggagca gtccagcgcc
      481 gtgaaggcac gtcagcagat gctggctgat atcctgaaca gactggagcc actggtttct
      541 caggagaatc ttcgaggatt gagccggact gcggctctga ttctagtgca aagtgctgag
      601 cgggccaggc aaggccgact acgagccact ttcatgcgag aaatcaggaa agaggaggaa
      661 cgggatcgga ggatttggga gaatgggcag cagaaattca gccgggacca gggagccatt
      721 gttatacaga aggtgtggaa aggttacctc cagagaaaac gcattgagca ggatcgacgg
      781 gtggagatgg agttcattgg catgctccct tcgcccaacc agacagcacg cctgaatacc
      841 cttaaccagg ccttcctagg ggaggagtca cggaggatgc ggcaggtgga aaaggaagag
      901 gaattccagg aagccatagg gaagacctac gagtctctca cggagaccga gggacccgac
      961 atgaaggaga ggatgaagga tcaaatacga caatggttta ttgaatgcca tgcccttact
     1021 ggtcggttcc ctgattatcc agatgaggct tcaggtggat cctacctgat ctttgcagac
     1081 aagactccag agcaggtgag actagacctg gaagcacaag cccaggagag tagaaagaag
     1141 gaccaagaga agaaagagaa gaataaggag aaagagaagg aaaaaaagga gaagaagaaa
     1201 aagaaagtca aggaagaaaa ggtcaagaag gagccagaag tgatgttcag agtgctgcca
     1261 tccaaatcta ttcctgtgat taatgctggg catgaggaat acacaagtgt gtggaagagc
     1321 cggtatgaca acaagcatcc cagccagaac tttgactctg agaccctccg ggaggagaaa
     1381 agaaagcaag tggagatgga gatccgggta caggtggatg agctaatgag acaggaactg
     1441 aagaatttgc gtctggctgt ggacagggag gagaccagac ccctcaagtc tccaaagaaa
     1501 aaaggaggga agaaaagtgg aaagaagaag aaggaaaaag atctgacccc agaccggtct
     1561 gtggactcac tgtttgaaga gcttgttatt attggcctta taaagaagtc tgcactagtg
     1621 acactcagtg actacattgg tgattgcctc tatctcgggt ccactctgac tttggcaaac
     1681 aagatgccca tgccgtccct gtttgatatc cggcagaaca tggcgctgta tggggttctt
     1741 cggctgggct cccatgatat acataccatg gctccccttg tccgctccat tctcctggtg
     1801 ggaccctctg gcatgggcaa gaagatgttg gtccaagctg tgtgcacaga aactggtgcc
     1861 aacctgtttg acctgtcacc tgacaacctg atgggcaaat acccaggaaa gaacggagca
     1921 cagctactag tacacattgt ctttaaggtg gcccggctcc tccagccctc tgtcatctgg
     1981 attggaaata ctgagaaaac cttctacaag aaggtcccaa aggaagaaag gacgatggac
     2041 cctaaaagaa taaagaaaga cctcatgagg gccacaaagc agctgagccc tggcgaccga
     2101 gtgatgctga ttgggaccac ggagcgccca cagctggctg agatgaaggg gctgtgccgg
     2161 ttctatgagc gtattctctt cattcccagg cctgattatg cttctcgcta tgtgctctgg
     2221 aaacggatga tagagagcca aggaagggga gtacagctga cctcgagtct ggatgttagt
     2281 gccctggcta gggtgtctga tggctacaca cctagtcata ttctacagtc tatccagtca
     2341 gtgttgacag aacgccggct ccttcaactt atcaagaagc cactggttgc ctctgagttt
     2401 gtggggcact tggcaaggct ggatccagta tacagggagg aggaggaatc ccttaaggaa
     2461 tggtttttca agactccact gggaaaaaag aatatgaaat ttaccaagga ccaactggag
     2521 gctgaggagg ccagattgac aaaggagaag aagaagaaaa agtgatggtc tttgctgtgg
     2581 ggtgtgatgt ggtgaatggc aggtgcctcc agagttaagg gtgtgacaga cacataaagg
     2641 cccaggtggc tcctgagggc tcttctcttg
//
