LOCUS       NM_001403599            3876 bp    mRNA    linear   ROD 12-JUN-2024
DEFINITION  Mus musculus integrator complex subunit 6 like (Ints6l), transcript
            variant 1, mRNA.
ACCESSION   NM_001403599 XM_006527976
VERSION     NM_001403599.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3876)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC048362.14.
            
            On Apr 1, 2022 this sequence version replaced XM_006527976.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR13422598.1481107.1,
                                           SRR13861894.1100575.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849375, SAMN00849380
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-437               AC048362.14        8760-9196
            438-515             AC048362.14        9329-9406
            516-665             AC048362.14        33510-33659
            666-755             AC048362.14        34451-34540
            756-939             AC048362.14        34770-34953
            940-1068            AC048362.14        35206-35334
            1069-1232           AC048362.14        37659-37822
            1233-1385           AC048362.14        39119-39271
            1386-1518           AC048362.14        42886-43018
            1519-1613           AC048362.14        46919-47013
            1614-1724           AC048362.14        48013-48123
            1725-1943           AC048362.14        50396-50614
            1944-2067           AC048362.14        51741-51864
            2068-2210           AC048362.14        53448-53590
            2211-2445           AC048362.14        55541-55775
            2446-2820           AC048362.14        58605-58979
            2821-2914           AC048362.14        60253-60346
            2915-3876           AC048362.14        60760-61721
FEATURES             Location/Qualifiers
     source          1..3876
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="X"
                     /map="X 30.06 cM"
     gene            1..3876
                     /gene="Ints6l"
                     /gene_synonym="4930535D10Rik; 6330505F04Rik; D130066O12;
                     Ddx26b"
                     /note="integrator complex subunit 6 like"
                     /db_xref="GeneID:236790"
                     /db_xref="MGI:MGI:2442593"
     exon            1..437
                     /gene="Ints6l"
                     /gene_synonym="4930535D10Rik; 6330505F04Rik; D130066O12;
                     Ddx26b"
                     /inference="alignment:Splign:2.1.0"
     CDS             327..3023
                     /gene="Ints6l"
                     /gene_synonym="4930535D10Rik; 6330505F04Rik; D130066O12;
                     Ddx26b"
                     /note="isoform 1 is encoded by transcript variant 1;
                     protein DDX26B; DEAD/H (Asp-Glu-Ala-Asp/His) box
                     polypeptide 26B"
                     /codon_start=1
                     /product="integrator complex subunit 6-like isoform 1"
                     /protein_id="NP_001390528.1"
                     /db_xref="GeneID:236790"
                     /db_xref="MGI:MGI:2442593"
                     /translation="MPILLFLIDTSASMNQRTDLGTSYLDIAKGAVELFLKLRARDPA
                     SRGDRYMLVTYDEPPYCIKAGWKENHATFMNELKNLQASGLTTLGQALRSSFDLLNLN
                     RLISGIDNYGQGRNPFFLEPSILITITDGNKLTSTASVQEELHLPLNSPLPGSELTKE
                     PFRWDQRLFALVLRLPGVASTEPEQLGSVPSDESAITQMCEVTGGRSYCVRTQRMLNQ
                     CLESLVQKVQSGVVINFEKTGPDPLPVGEDTLMELCRPSNLFAAQPWHSCHKLIYVRP
                     NSKTGVPVGHWPIPESFWPEQNLPSLPPRTSHPVVRFSCVDCEPMVIDKLPFDKYELE
                     PSPLTQYILERKSPHTCWQVFVTSSSKYNELGYPFGYLKASTTLTCVNLFVMPYNYPV
                     LLPLLDDLFKVHKLKPNLKWRQAFDSYLKTLPPYYLIPLKKALRMMGAPNLISDNLDC
                     GLSYSVISYLKKLSQQTKLESDQILASVGKKPPQEIGIKVKNHSACGLPLAHNKSFRK
                     LLKEIIGESAPRLTELNPKEFAGFQVGLLNKDLKPQTYRNAYDIPRRGLLDQLTRMRS
                     NLLQTRKFIVGQDEDSLHSVPVAQMGNYQEYLKMLASPLRELDPDQPKRLHTFGNPFK
                     QDKKGMMIDEADEFVVGPQNKVKRPGEPNSPMSSKRRRSMSLLLRRAQTAPTVTNHVG
                     GKGPLSASWFPSCPSLVKHTFGHPDTTVIHDTHEEKMENGQSPPDGFLLKSAPAEFMN
                     VSGESFISSQLDSLSDDFTGLRKDGFIHKPGNNILLGGAKTCSLSVADQKITMASALE
                     TVPNSMQITPAMAQGINADIKHQLMKEVRKFGRKYERIFILLEEVQGPLETKKQFVEF
                     TIKEAARFKRRVLIQYLEKVLEKIDSHHLLNNVNHINSRSSC"
     exon            438..515
                     /gene="Ints6l"
                     /gene_synonym="4930535D10Rik; 6330505F04Rik; D130066O12;
                     Ddx26b"
                     /inference="alignment:Splign:2.1.0"
     exon            516..665
                     /gene="Ints6l"
                     /gene_synonym="4930535D10Rik; 6330505F04Rik; D130066O12;
                     Ddx26b"
                     /inference="alignment:Splign:2.1.0"
     exon            666..755
                     /gene="Ints6l"
                     /gene_synonym="4930535D10Rik; 6330505F04Rik; D130066O12;
                     Ddx26b"
                     /inference="alignment:Splign:2.1.0"
     exon            756..939
                     /gene="Ints6l"
                     /gene_synonym="4930535D10Rik; 6330505F04Rik; D130066O12;
                     Ddx26b"
                     /inference="alignment:Splign:2.1.0"
     exon            940..1068
                     /gene="Ints6l"
                     /gene_synonym="4930535D10Rik; 6330505F04Rik; D130066O12;
                     Ddx26b"
                     /inference="alignment:Splign:2.1.0"
     exon            1069..1232
                     /gene="Ints6l"
                     /gene_synonym="4930535D10Rik; 6330505F04Rik; D130066O12;
                     Ddx26b"
                     /inference="alignment:Splign:2.1.0"
     exon            1233..1385
                     /gene="Ints6l"
                     /gene_synonym="4930535D10Rik; 6330505F04Rik; D130066O12;
                     Ddx26b"
                     /inference="alignment:Splign:2.1.0"
     exon            1386..1518
                     /gene="Ints6l"
                     /gene_synonym="4930535D10Rik; 6330505F04Rik; D130066O12;
                     Ddx26b"
                     /inference="alignment:Splign:2.1.0"
     exon            1519..1613
                     /gene="Ints6l"
                     /gene_synonym="4930535D10Rik; 6330505F04Rik; D130066O12;
                     Ddx26b"
                     /inference="alignment:Splign:2.1.0"
     exon            1614..1724
                     /gene="Ints6l"
                     /gene_synonym="4930535D10Rik; 6330505F04Rik; D130066O12;
                     Ddx26b"
                     /inference="alignment:Splign:2.1.0"
     exon            1725..1943
                     /gene="Ints6l"
                     /gene_synonym="4930535D10Rik; 6330505F04Rik; D130066O12;
                     Ddx26b"
                     /inference="alignment:Splign:2.1.0"
     exon            1944..2067
                     /gene="Ints6l"
                     /gene_synonym="4930535D10Rik; 6330505F04Rik; D130066O12;
                     Ddx26b"
                     /inference="alignment:Splign:2.1.0"
     exon            2068..2210
                     /gene="Ints6l"
                     /gene_synonym="4930535D10Rik; 6330505F04Rik; D130066O12;
                     Ddx26b"
                     /inference="alignment:Splign:2.1.0"
     exon            2211..2445
                     /gene="Ints6l"
                     /gene_synonym="4930535D10Rik; 6330505F04Rik; D130066O12;
                     Ddx26b"
                     /inference="alignment:Splign:2.1.0"
     exon            2446..2820
                     /gene="Ints6l"
                     /gene_synonym="4930535D10Rik; 6330505F04Rik; D130066O12;
                     Ddx26b"
                     /inference="alignment:Splign:2.1.0"
     exon            2821..2914
                     /gene="Ints6l"
                     /gene_synonym="4930535D10Rik; 6330505F04Rik; D130066O12;
                     Ddx26b"
                     /inference="alignment:Splign:2.1.0"
     exon            2915..3876
                     /gene="Ints6l"
                     /gene_synonym="4930535D10Rik; 6330505F04Rik; D130066O12;
                     Ddx26b"
                     /inference="alignment:Splign:2.1.0"
     regulatory      3844..3849
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ints6l"
                     /gene_synonym="4930535D10Rik; 6330505F04Rik; D130066O12;
                     Ddx26b"
                     /note="hexamer: AATAAA"
     polyA_site      3876
                     /gene="Ints6l"
                     /gene_synonym="4930535D10Rik; 6330505F04Rik; D130066O12;
                     Ddx26b"
                     /note="major polyA site"
ORIGIN      
        1 agtctggggc gagcgctcta gtgagcgtgg acggatgctt aggcagtagt cctggcagcg
       61 gcagcggcgg cgggcagtag tggtggcaga agaggggaag agagacggcc cggagaccga
      121 cacactcaca ctttcaagtt cccttggagg gagaggagtt ggggctgcag aaagaggcca
      181 ggagcggtcc catctatccc atcccgtttc ccacttttcc tcttgctccc tggctctgcg
      241 agagttcagg atttgggtag ccatacgtgg cattgaggga aaagggactg ggagagtggg
      301 gaccagaacc aggggtgtag tggaagatgc ccatcctgct gttcctcata gatacgtccg
      361 cctccatgaa ccagcgcact gacctgggca cctcctattt ggacattgct aaaggcgctg
      421 tggagttatt cttgaagctg cgcgcccggg acccagccag ccgcggagac aggtacatgc
      481 tggtcaccta cgatgagcct ccctactgca tcaaggctgg ttggaaggaa aatcacgcca
      541 cattcatgaa tgaactgaaa aatctccagg cttctggact gactactctt ggtcaggctc
      601 taagatcctc ctttgatttg ttaaatctca atagattaat atctggaata gacaattatg
      661 gacaggggag aaatccattt tttttagagc cgtctatttt aattaccatc acagatggaa
      721 acaagttaac aagtactgct agcgttcaag aagagcttca tcttcctttg aattctcctc
      781 tgcctggaag tgaactaacc aaagaacctt ttcgttggga tcaaaggtta tttgccctgg
      841 tgttgcgttt gcctggagtg gcttctactg agccagagca gctagggagt gtcccaagtg
      901 atgaatcagc catcacacag atgtgcgagg tcacaggagg tcgctcctac tgtgtgagaa
      961 cacaaagaat gttaaatcag tgtttagagt cactagttca aaaagtacag agtggtgtag
     1021 ttattaattt tgagaaaaca ggaccggatc cacttcctgt tggagaagac acactgatgg
     1081 agttgtgcag gccaagcaac ctatttgctg ctcaaccgtg gcatagttgt cataaactca
     1141 tctatgtgcg acctaattct aaaactggtg ttcctgttgg acactggcca attccagaat
     1201 cgttttggcc agaacagaat ttaccttcac tacctccacg aacatcacat cctgttgtga
     1261 ggttttcctg tgttgattgt gaaccaatgg ttatagacaa acttcccttt gacaaatatg
     1321 aacttgaacc gtctccctta actcagtata tcttggaaag aaaatctcct catacttgct
     1381 ggcaggtgtt tgttaccagc agttcaaaat ataatgagct tggatatcca tttggttatt
     1441 tgaaagcgag tactacttta acttgtgtaa acctctttgt gatgccttac aactacccag
     1501 tcttacttcc tcttttagat gacttgttta aagtgcacaa gcttaagcca aatctgaagt
     1561 ggcgacaggc ttttgacagc tacttaaaaa ctctgcctcc atactactta ataccattaa
     1621 agaaagcact aaggatgatg ggagctccaa atctgatatc agataattta gattgtggac
     1681 ttagttacag tgttatctct taccttaaaa aactcagcca acagaccaag ctagagtcag
     1741 accaaattct agcatcagtg gggaagaaac ctccccagga aattggtatc aaagtgaaaa
     1801 accattctgc atgtggccta cccttggctc acaataaaag ttttaggaaa ctgttaaaag
     1861 aaatcatagg ggaaagtgca ccaaggctca cagaactgaa tcccaaagag tttgctggct
     1921 tccaagtggg gctcttaaac aaggatttga aacctcagac atataggaac gcttatgata
     1981 tcccacgtag aggacttttg gaccagttga ccagaatgag atccaatctg ctgcagactc
     2041 ggaagtttat tgttggccaa gatgaagatt cacttcatag tgtcccagtt gcacaaatgg
     2101 gtaactatca ggaatatcta aagatgctgg cttctccact acgagagctc gatccagatc
     2161 agccaaaacg actgcatact tttggcaatc catttaagca agataagaag ggaatgatga
     2221 tcgatgaagc agatgagttt gtagtagggc cacaaaacaa agtgaaacgt cctggagaac
     2281 ccaacagtcc tatgtcatct aagcgaaggc ggagtatgtc cctgctgttg aggagagcac
     2341 agacagcacc tactgtaact aaccatgtgg gcgggaaggg accactctca gcctcgtggt
     2401 tcccatcttg tccaagcctc gtaaaacaca cctttggaca tccagacacc actgtcattc
     2461 atgataccca tgaagagaag atggaaaatg ggcaaagccc acctgatggc ttcttattaa
     2521 aatctgctcc agcagagttt atgaatgtgt caggagaaag ctttatatcc agccagttgg
     2581 attctctatc tgacgacttt actggtctca ggaaagatgg attcattcac aaacctggta
     2641 ataatatact tctaggagga gccaaaacct gcagtctttc tgtagctgac caaaaaatca
     2701 caatggcatc tgctttggaa acggtgccaa attcaatgca aatcactcct gcaatggctc
     2761 aaggcatcaa tgctgacata aagcatcaat taatgaagga agttcgaaag tttggacgaa
     2821 agtatgaaag gattttcatt ttgcttgaag aagtgcaggg acctctagag acgaagaaac
     2881 agtttgttga atttaccatc aaggaagctg caaggtttaa aagaagagtc ttaattcagt
     2941 accttgagaa ggtactagaa aaaatcgatt cccaccacct tcttaacaat gtgaatcaca
     3001 tcaacagcag atcatcatgt taatgccaag ccaagtgagg aaaaagaaca ccttttatgt
     3061 gctttcaaat gcaatgggac gttactgaag ccctatagta tgtttgagtg acagagcgac
     3121 ctaactcagg ctatgagaaa ggagttgact tgagctttta acgattatct ggaagtaaaa
     3181 tctgggcttt tgccttaaga attattgaga atattttttt catttcgttg tttatttttt
     3241 ccaattagga aaagagatgc tgaatcacag agcactgctg ctcctactac agctagtaga
     3301 gttcactcat tttggacctt gccattccag gcggtttcag agtgaatagg gactggccac
     3361 ttccaaggcg agcactacct actgtcctca ttgtgtgcta aagaacacga aagcagagag
     3421 agtccacgtg gtgatcttgt gctcaaagaa ctcttcaaag atttctagct gtgcctttta
     3481 aaccatgcaa tattcaggat cgttggaatc aaagagtaaa aagctgctat ttcggtaact
     3541 taattctctc tgggaaaggg cagggggagt cagcaaacaa tctacctcga gtgctcttcc
     3601 actttgacta ggaccattac aaagtgtatc tgaggctgca ctaacctctg acatctgttc
     3661 ttgcatgtga caacagaaag ctttcaggtg gacttgtaca tttttgtgct ttggaagcac
     3721 caaaaggaaa aataatatgt atattttctt tgaagtttat acagaagttt atatggagca
     3781 gtattgttgt ttttatttgt aaaaatgtaa gtgatcaaag agattttcac tttgcatata
     3841 tgaaataaaa tcattttatt gattttttca aaacta
//
