LOCUS       NM_028020               2350 bp    mRNA    linear   ROD 02-MAY-2024
DEFINITION  Mus musculus integrator complex subunit 11 (Ints11), transcript
            variant 1, mRNA.
ACCESSION   NM_028020
VERSION     NM_028020.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2350)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 2350)
  AUTHORS   Spies,N., Smith,C.L., Rodriguez,J.M., Baker,J.C., Batzoglou,S. and
            Sidow,A.
  TITLE     Constraint and divergence of global gene expression in the
            mammalian embryo
  JOURNAL   Elife 4, e05538 (2015)
   PUBMED   25871848
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 2350)
  AUTHORS   Bachmanov,A.A., Li,X., Reed,D.R., Ohmen,J.D., Li,S., Chen,Z.,
            Tordoff,M.G., de Jong,P.J., Wu,C., West,D.B., Chatterjee,A.,
            Ross,D.A. and Beauchamp,G.K.
  TITLE     Positional cloning of the mouse saccharin preference (Sac) locus
  JOURNAL   Chem Senses 26 (7), 925-933 (2001)
   PUBMED   11555487
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL670236.9.
            
            On Mar 29, 2023 this sequence version replaced NM_028020.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK167607.1, AK090206.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-156               AL670236.9         176155-176310
            157-254             AL670236.9         178717-178814
            255-328             AL670236.9         179440-179513
            329-557             AL670236.9         181728-181956
            558-656             AL670236.9         191688-191786
            657-691             AL670236.9         191877-191911
            692-830             AL670236.9         192155-192293
            831-895             AL670236.9         192682-192746
            896-1085            AL670236.9         193388-193577
            1086-1169           AL670236.9         193706-193789
            1170-1259           AL670236.9         194022-194111
            1260-1422           AL670236.9         194195-194357
            1423-1530           AL670236.9         194445-194552
            1531-1592           AL670236.9         194638-194699
            1593-1735           AL670236.9         194774-194916
            1736-1865           AL670236.9         194986-195115
            1866-2350           AL670236.9         195210-195694
FEATURES             Location/Qualifiers
     source          1..2350
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="4"
                     /map="4 87.66 cM"
     gene            1..2350
                     /gene="Ints11"
                     /gene_synonym="2410006F12Rik; Cpsf3l"
                     /note="integrator complex subunit 11"
                     /db_xref="GeneID:71957"
                     /db_xref="MGI:MGI:1919207"
     exon            1..156
                     /gene="Ints11"
                     /gene_synonym="2410006F12Rik; Cpsf3l"
                     /inference="alignment:Splign:2.1.0"
     exon            157..254
                     /gene="Ints11"
                     /gene_synonym="2410006F12Rik; Cpsf3l"
                     /inference="alignment:Splign:2.1.0"
     exon            255..328
                     /gene="Ints11"
                     /gene_synonym="2410006F12Rik; Cpsf3l"
                     /inference="alignment:Splign:2.1.0"
     exon            329..557
                     /gene="Ints11"
                     /gene_synonym="2410006F12Rik; Cpsf3l"
                     /inference="alignment:Splign:2.1.0"
     exon            558..656
                     /gene="Ints11"
                     /gene_synonym="2410006F12Rik; Cpsf3l"
                     /inference="alignment:Splign:2.1.0"
     exon            657..691
                     /gene="Ints11"
                     /gene_synonym="2410006F12Rik; Cpsf3l"
                     /inference="alignment:Splign:2.1.0"
     exon            692..830
                     /gene="Ints11"
                     /gene_synonym="2410006F12Rik; Cpsf3l"
                     /inference="alignment:Splign:2.1.0"
     exon            831..895
                     /gene="Ints11"
                     /gene_synonym="2410006F12Rik; Cpsf3l"
                     /inference="alignment:Splign:2.1.0"
     exon            896..1085
                     /gene="Ints11"
                     /gene_synonym="2410006F12Rik; Cpsf3l"
                     /inference="alignment:Splign:2.1.0"
     exon            1086..1169
                     /gene="Ints11"
                     /gene_synonym="2410006F12Rik; Cpsf3l"
                     /inference="alignment:Splign:2.1.0"
     exon            1170..1259
                     /gene="Ints11"
                     /gene_synonym="2410006F12Rik; Cpsf3l"
                     /inference="alignment:Splign:2.1.0"
     exon            1260..1422
                     /gene="Ints11"
                     /gene_synonym="2410006F12Rik; Cpsf3l"
                     /inference="alignment:Splign:2.1.0"
     exon            1423..1530
                     /gene="Ints11"
                     /gene_synonym="2410006F12Rik; Cpsf3l"
                     /inference="alignment:Splign:2.1.0"
     exon            1531..1592
                     /gene="Ints11"
                     /gene_synonym="2410006F12Rik; Cpsf3l"
                     /inference="alignment:Splign:2.1.0"
     exon            1593..1735
                     /gene="Ints11"
                     /gene_synonym="2410006F12Rik; Cpsf3l"
                     /inference="alignment:Splign:2.1.0"
     exon            1736..1865
                     /gene="Ints11"
                     /gene_synonym="2410006F12Rik; Cpsf3l"
                     /inference="alignment:Splign:2.1.0"
     exon            1866..2350
                     /gene="Ints11"
                     /gene_synonym="2410006F12Rik; Cpsf3l"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2091..2096
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ints11"
                     /gene_synonym="2410006F12Rik; Cpsf3l"
                     /note="hexamer: AATAAA"
     polyA_site      2115
                     /gene="Ints11"
                     /gene_synonym="2410006F12Rik; Cpsf3l"
                     /note="major polyA site"
     regulatory      2324..2329
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ints11"
                     /gene_synonym="2410006F12Rik; Cpsf3l"
                     /note="hexamer: AATAAA"
     polyA_site      2350
                     /gene="Ints11"
                     /gene_synonym="2410006F12Rik; Cpsf3l"
ORIGIN      
        1 gcgcgcagtg cggagggact cgccgcggcc gggcgtctga tgtgagcgcg cgcggggtct
       61 gcctgcggct ctcctgcggg cggtgcacgc gagccgtgga gccgtggttc gaggcgacct
      121 ccctgaccat gcccgagatt agggtcactc ccttgggggc tggccaggat gtaggccgaa
      181 gctgcatctt ggtctccatt tcggggaaga atgtcatgtt ggactgtggg atgcacatgg
      241 gctacaatga tgacaggcgc tttcctgact tttcttacat cacccagagt ggccgcctga
      301 ctgactttct ggactgtgtg atcatcagcc acttccacct ggaccattgt ggggcactcc
      361 cctacttcag tgaaatggtg ggctacgatg gacccatcta tatgacccat cctacccagg
      421 ccatctgccc catcctgttg gaagactacc gcaagattgc agtggacaag aagggcgagg
      481 ccaatttctt cacttctcag atgatcaaag actgtatgaa gaaggtggtg gctgttcacc
      541 tgcatcagac agttcaggtg gatgatgagc tggaaatcaa ggcatactat gcaggccacg
      601 tgctgggggc agccatgttc cagattaaag tgggctcgga gtctgtggtc tacacgggtg
      661 actataacat gaccccagac cggcatttgg gggctgcgtg gattgacaag tgtcgcccca
      721 acttgctcat cacagaatcc acatatgcta caaccatccg agattccaaa cgctgcagag
      781 agcgagattt cctaaagaaa gttcatgaaa ctgtggagcg tggaggaaag gtgctgattc
      841 ctgtgtttgc actgggccga gcacaagaac tctgcatcct gctggagacc ttctgggagc
      901 gcatgaacct gaaggtgccc atatacttct ctacgggcct gacagagaaa gccaaccact
      961 actacaagct cttcatcacc tggaccaacc agaagatccg gaagacattt gtccagagga
     1021 acatgtttga gtttaagcac atcaaagcct ttgaccggac atttgctgac aacccaggtc
     1081 ccatggttgt gtttgccaca cctgggatgc tgcatgctgg ccaatccctg caaatcttcc
     1141 gaaagtgggc aggaaatgag aagaacatgg tcatcatgcc tggttattgt gtgcaaggca
     1201 ccgtgggcca caagatcctt agtgggcaac gtaaactgga aatggaaggg cgccagatgc
     1261 tggaggtaaa gatgcaagtg gaatacatgt ccttcagcgc ccatgctgat gccaagggca
     1321 tcatgcagct ggtaggacaa gcggagcccg agagtgtgct attggtgcat ggcgaagcca
     1381 agaagatgga gttcctgagg cagaagattg agcaggaatt ccgggtcagc tgctacatgc
     1441 cggccaatgg tgagacagtg acgctgccca caagccctag catccctgtg ggcatctccc
     1501 tgggattgct gaagcgggag atggtgcagg gactgttgcc tgaagccaaa aaacctaggc
     1561 ttttacatgg caccctaatt atgaaagaca gtaatttccg gctggtatcc tcagagcaag
     1621 ccctgaagga gctgggcctg gcagagcacc aacttcgctt cacctgtcgt gtgcacctgc
     1681 aggacacacg caaagaacaa gaaacagctt tacgtgtgta cagccatctc aagagcaccc
     1741 tcaaggacca ctgtgtacag catctccccg atggctctgt gactgtggag tccattctaa
     1801 tccaggctgc cgcccattcg gaggaccctg gtaccaaggt gctattggtc tcctggactt
     1861 accaggatga agagctggga agcttcctca caacattgct caaaaatggc cttcctcagg
     1921 ctcccagctg acatgtatcc accaggaatc cactgctctt gtctcttgct gttctcccag
     1981 caggaccagg gcttcggccg agaggcgggt gccctgagta aatgggagac catgactgga
     2041 ttacagaccc cgttctaggg ataagatcag agtcataggc tggctaaagt aataaacaga
     2101 cctttttgtt ctctatgtct tttattccta ctctctgccc caagaaaaca gggttcccag
     2161 aaaaatgggg tttttacagc ttttgactgc ctggtacccc atgttgttcc ctttagtgac
     2221 aaagggatgt ccagggtaga gagcccgggg aagtggtagc tgctggaagg taggcaggac
     2281 tgccagagcc ctacatagct gtagattaat ctctgccgag cacaataaat gttgtacaat
     2341 ctccacttca
//
