LOCUS       NM_001370765            1403 bp    mRNA    linear   ROD 03-SEP-2024
DEFINITION  Mus musculus INO80 complex subunit E (Ino80e), transcript variant
            1, mRNA.
ACCESSION   NM_001370765 XM_006507729
VERSION     NM_001370765.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1403)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1403)
  AUTHORS   Elsen,G.E., Bedogni,F., Hodge,R.D., Bammler,T.K., MacDonald,J.W.,
            Lindtner,S., Rubenstein,J.L.R. and Hevner,R.F.
  TITLE     The Epigenetic Factor Landscape of Developing Neocortex Is
            Regulated by Transcription Factors Pax6--> Tbr2--> Tbr1
  JOURNAL   Front Neurosci 12, 571 (2018)
   PUBMED   30186101
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1403)
  AUTHORS   Min,J.N., Tian,Y., Xiao,Y., Wu,L., Li,L. and Chang,S.
  TITLE     The mINO80 chromatin remodeling complex is required for efficient
            telomere replication and maintenance of genome stability
  JOURNAL   Cell Res 23 (12), 1396-1413 (2013)
   PUBMED   23979016
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC124505.4.
            
            On May 29, 2019 this sequence version replaced XM_006507729.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR7345562.850835.1,
                                           SRR5189679.95380.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN01164142
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-99                AC124505.4         203042-203140       c
            100-412             AC124505.4         202473-202785       c
            413-483             AC124505.4         202244-202314       c
            484-536             AC124505.4         202008-202060       c
            537-615             AC124505.4         198642-198720       c
            616-727             AC124505.4         198444-198555       c
            728-844             AC124505.4         197994-198110       c
            845-1403            AC124505.4         193201-193759       c
FEATURES             Location/Qualifiers
     source          1..1403
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="7"
                     /map="7 69.25 cM"
     gene            1..1403
                     /gene="Ino80e"
                     /gene_synonym="Ccdc85; Ccdc95"
                     /note="INO80 complex subunit E"
                     /db_xref="GeneID:233875"
                     /db_xref="MGI:MGI:2141881"
     exon            1..99
                     /gene="Ino80e"
                     /gene_synonym="Ccdc85; Ccdc95"
                     /inference="alignment:Splign:2.1.0"
     CDS             44..1066
                     /gene="Ino80e"
                     /gene_synonym="Ccdc85; Ccdc95"
                     /note="isoform 1 is encoded by transcript variant 1;
                     coiled-coil domain containing 95; NO80 complex subunit E"
                     /codon_start=1
                     /product="INO80 complex subunit E isoform 1"
                     /protein_id="NP_001357694.1"
                     /db_xref="GeneID:233875"
                     /db_xref="MGI:MGI:2141881"
                     /translation="MWSTETENFGRPCFFLSSCVQLLCDLSSPRSHWKQRSFRVFPQE
                     GGRCDYAPRARRTLGVVVRFIRRCKVSGSGGVRGRADLGSGTLLRGVSPWRVMNGPAD
                     GEVDYKKKYRNLKRKLKFLIYEHECFQEELRKAQRKLLKVSRDKSFLLDRLLQYENVD
                     EDSSDSDATASSDNSETEGTPKLSDTPAPKRKRSPPMGGVPSPSSLSLPPSTGFPLQT
                     SGAPSPYLSSLASPPYPPFPSDYLALQLPEPSPLRPKLEKRPRLPRKLKMSVGPPDCP
                     VGGPLAFPARGSGASVGAALTPLPPPKMPPHTILSTVPQQMFSDAGSGDDALDGDDDL
                     VIDIPE"
     exon            100..412
                     /gene="Ino80e"
                     /gene_synonym="Ccdc85; Ccdc95"
                     /inference="alignment:Splign:2.1.0"
     exon            413..483
                     /gene="Ino80e"
                     /gene_synonym="Ccdc85; Ccdc95"
                     /inference="alignment:Splign:2.1.0"
     exon            484..536
                     /gene="Ino80e"
                     /gene_synonym="Ccdc85; Ccdc95"
                     /inference="alignment:Splign:2.1.0"
     exon            537..615
                     /gene="Ino80e"
                     /gene_synonym="Ccdc85; Ccdc95"
                     /inference="alignment:Splign:2.1.0"
     exon            616..727
                     /gene="Ino80e"
                     /gene_synonym="Ccdc85; Ccdc95"
                     /inference="alignment:Splign:2.1.0"
     exon            728..844
                     /gene="Ino80e"
                     /gene_synonym="Ccdc85; Ccdc95"
                     /inference="alignment:Splign:2.1.0"
     exon            845..1403
                     /gene="Ino80e"
                     /gene_synonym="Ccdc85; Ccdc95"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1384..1389
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ino80e"
                     /gene_synonym="Ccdc85; Ccdc95"
                     /note="hexamer: ATTAAA"
     polyA_site      1403
                     /gene="Ino80e"
                     /gene_synonym="Ccdc85; Ccdc95"
                     /note="major polyA site"
ORIGIN      
        1 gcagtgcggc ggcttcgtga ggaatgggac cgttgagcct ccgatgtgga gcactgagac
       61 ggaaaacttt ggccgacctt gctttttcct gagcagctgt gtccagctcc tctgtgacct
      121 cagctcaccg cgaagccact ggaagcagcg ttcctttcgg gtcttccccc aggagggcgg
      181 gcggtgtgat tacgctcccc gcgcgcggag gacgctggga gttgtagtcc gtttcatacg
      241 gcgttgcaaa gtctccggaa gtggaggtgt gagaggccgg gcggacttgg gtagcgggac
      301 tctactccgg ggcgtttctc cctggcgggt catgaacgga ccagcggacg gcgaagtgga
      361 ctacaaaaag aaatacagga atctgaagcg gaagctcaag ttcctcattt acgagcacga
      421 gtgcttccag gaggagctca gaaaggcgca aaggaaattg ctgaaggttt cccgagacaa
      481 gagtttcctt ctagatcgac ttctgcagta tgagaacgtg gatgaagact cctctgattc
      541 agatgccacc gcatcttcag ataacagtga gacagagggg acacccaagt tgtctgacac
      601 gccagcccct aagaggaaga gaagcccccc catgggaggt gtcccatccc cttccagcct
      661 ctccttgcct ccttcaacag gctttcccct gcagacttct ggggccccct ccccatacct
      721 gagctcgctg gcttctcccc cttacccccc attcccttct gactacctgg ccctgcagct
      781 gcctgagccc agccccctga ggcccaagct ggagaaacgg ccccgcctac cccggaaact
      841 caagatgtcg gttggacccc ctgactgccc cgtgggtggg ccgctggctt tcccagccag
      901 gggttctggt gccagtgttg gggcagccct gacccccctg cctcctccca agatgcctcc
      961 acatacaatc ctgagcaccg tccctcagca gatgttcagc gatgcaggca gtggggatga
     1021 cgccctggac ggagatgacg acctggtgat cgacattcca gagtagccac ccagtgccac
     1081 ctgccaggca cctcacagca ctcctcctgt gccagcaaac tcaagcccac ttcctcaaga
     1141 gatgtttatt gatgcccagt tgccatgctt cggccactga cacaatcaga aaaggcgtaa
     1201 acatgcacaa tgtccccgag gaaggtggca gggtcctgcc cttacatccc agccccatcc
     1261 agggaacagt tatttaaacg agtggccaaa agggtctgct acatcttcgg gaggtagaga
     1321 cctacggtgg ccgccccttt agaagagcag ctacgcaggg ctgggattta gtgaaggctc
     1381 tgtattaaag agttggctct ttc
//
