LOCUS       NM_001013577            3221 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus INTS3 and NABP interacting protein (Inip), mRNA.
ACCESSION   NM_001013577 XM_485388
VERSION     NM_001013577.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3221)
  AUTHORS   Lau,N.C., Seto,A.G., Kim,J., Kuramochi-Miyagawa,S., Nakano,T.,
            Bartel,D.P. and Kingston,R.E.
  TITLE     Characterization of the piRNA complex from rat testes
  JOURNAL   Science 313 (5785), 363-367 (2006)
   PUBMED   16778019
REFERENCE   2  (bases 1 to 3221)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BB641174.1, AK004256.1 and AL806512.9.
            
            On May 17, 2005 this sequence version replaced XM_485388.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK159116.1, SRR17253013.1108092.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849375,
                                           SAMN00849377 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-544               BB641174.1         1-544
            545-1566            AK004256.1         418-1439
            1567-3221           AL806512.9         189855-191509       c
FEATURES             Location/Qualifiers
     source          1..3221
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="4"
                     /map="4 32.81 cM"
     gene            1..3221
                     /gene="Inip"
                     /gene_synonym="1110054O05Rik; 2610312O17Rik; Ssbip1"
                     /note="INTS3 and NABP interacting protein"
                     /db_xref="GeneID:66209"
                     /db_xref="MGI:MGI:1913459"
     exon            1..128
                     /gene="Inip"
                     /gene_synonym="1110054O05Rik; 2610312O17Rik; Ssbip1"
                     /inference="alignment:Splign:2.1.0"
     exon            129..209
                     /gene="Inip"
                     /gene_synonym="1110054O05Rik; 2610312O17Rik; Ssbip1"
                     /inference="alignment:Splign:2.1.0"
     CDS             185..499
                     /gene="Inip"
                     /gene_synonym="1110054O05Rik; 2610312O17Rik; Ssbip1"
                     /note="SOSS-C; SSB-interacting protein 1; sensor of ssDNA
                     subunit C; sensor of single-strand DNA complex subunit C;
                     single-stranded DNA-binding protein-interacting protein 1"
                     /codon_start=1
                     /product="SOSS complex subunit C"
                     /protein_id="NP_001013595.1"
                     /db_xref="CCDS:CCDS18225.1"
                     /db_xref="GeneID:66209"
                     /db_xref="MGI:MGI:1913459"
                     /translation="MAANPSGQGFQNKNRVAILAELDKEKRKLLMQNQSSTSHPGASI
                     SLSRPSLTKDFRDHAEQQHIAAQQKAALQHAHAHSSGYFITQDSAFGNLILPVLPRLD
                     PE"
     exon            210..312
                     /gene="Inip"
                     /gene_synonym="1110054O05Rik; 2610312O17Rik; Ssbip1"
                     /inference="alignment:Splign:2.1.0"
     exon            313..403
                     /gene="Inip"
                     /gene_synonym="1110054O05Rik; 2610312O17Rik; Ssbip1"
                     /inference="alignment:Splign:2.1.0"
     exon            404..3221
                     /gene="Inip"
                     /gene_synonym="1110054O05Rik; 2610312O17Rik; Ssbip1"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1170..1175
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Inip"
                     /gene_synonym="1110054O05Rik; 2610312O17Rik; Ssbip1"
                     /note="hexamer: AATAAA"
     polyA_site      1197
                     /gene="Inip"
                     /gene_synonym="1110054O05Rik; 2610312O17Rik; Ssbip1"
     regulatory      1544..1549
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Inip"
                     /gene_synonym="1110054O05Rik; 2610312O17Rik; Ssbip1"
                     /note="hexamer: ATTAAA"
     polyA_site      1567
                     /gene="Inip"
                     /gene_synonym="1110054O05Rik; 2610312O17Rik; Ssbip1"
                     /note="major polyA site"
ORIGIN      
        1 gaagttggtg ccggcgggaa ggttgtagcg cggtgcattg ctgcactctc gccgggttct
       61 gcgtgggcgc gcccccctgc acggctgcga ccggacagcg agctttctcc aggctcctcg
      121 cattccggat gattgtaaag tcctgatcag tggccactga atataattga cccagaatag
      181 gaagatggca gcaaatcctt caggacaagg ttttcaaaat aaaaatagag ttgcaatttt
      241 ggctgaactg gacaaagaga aaagaaaact acttatgcag aaccaatctt caacaagcca
      301 ccctggagct agcatctcgc tctccagacc ctctcttacc aaggacttcc gggaccatgc
      361 tgagcagcag cacatcgctg cccagcagaa ggcagctttg cagcatgctc acgcacattc
      421 ctctggctac ttcataactc aagactctgc ctttgggaat ctgattctcc ctgttttacc
      481 tcgccttgac cccgaatgaa gaaagcgcct gctgcgacaa gggaccttgt aatagcaaat
      541 gtcaaagttc tcactcagct ctatacaaac tgactttcag aactttggag aacttagctt
      601 ttgtttcttt aaagaaagga atgagtaagt gagggaaaga gaagaggagc tgggcgctga
      661 gacctcgggg agcggcggcg aggacctggc tgtgctggcc gaggcggact tctttgcact
      721 gccattggac tttccctggg actcaggatc gcttagtctc atgaactctg catcaccttc
      781 aacaaggact gaattatcat gtgggaagcc ctgggtttga ccccatcact gcacatacaa
      841 gctctgagga tggcacatgc ctgtgatctc agcactagag gaattgaggc agaagattgg
      901 aagttcaagg ccatccttgc ctaggtagtg attttgagac cagtctaagg tatatgagac
      961 tgtgcctcaa aaataaccaa aatcacccca aaaaagccat taatagtcgt aactttaaag
     1021 agacgaggat gctttttaaa aaagtgaaga gcgggcttac gtactttgtg gttgcttgtg
     1081 ctaagaaaca agctatctag aaataggctc taagctaata actacttcta agaaaactcc
     1141 ccagtcagac tcatcttaag tctctttcaa ataaatgcta cagtggtagc aaatgaatga
     1201 tgtgactaaa tactgttatg aaaagcagcc taagaaatgt ggcagctgta aatggacgtg
     1261 tactctcact tcatgttgct gcagaagtgg tgggcctgag tggttttatt ttctattttt
     1321 tatctaattg aagacttaaa attaggcaaa ttaaggcctt ttaaaccatt ttacataggt
     1381 taaacaagtt gctcaacagg gccaaacttg aacaagaaca gaggtgctta tttatatatg
     1441 tacctcccac taccctccct ttgccctata gaattagagt ttgattaaag tgtgaaaagt
     1501 atggcttagg gagtcctata ataccttaca caaaggtgtc atgattaaaa ttctatttta
     1561 tgagggagtt actttgtaag gatcctgtca tttttctgta cccaaggatt gaacctagga
     1621 ctttaacagt tatggatgtg ttttaccgag cctcatcacc atgggtaact gactgcatct
     1681 ccatcctctc tgctgttggg ggaatttaaa catctttagt tggggcaata ttcagtttta
     1741 ctcccttctg atagtttgct ataggtgttt tcaccagcca catacgccgt cctgctcagt
     1801 gcaagtgaag cagcagtgag cagtcttcct gagtcatcac actgctccct gtgtctgctg
     1861 ctgacccagg gacccccttg ctcctgcccc tcaaagggcc atccagcttc cctctgcacc
     1921 tcctagtagt cttcctcgtc ttgcatttcg ctaagttcct gtgcagtgag atctgtgcct
     1981 gcctgcctgc ctgcctgcca tgcttctgaa cctgctactg acgttaggca gagagaaggg
     2041 tttctgctgt tgaaaccttg cctgctatgt gactttgtaa tctaggtgct tgttttccct
     2101 tcctgggtca gatcaaatac ccggatgaaa gggctgatct agattcacag tttgaggcac
     2161 agtctgtcat ggtcaggaag gtcaaggcag caggagcttg aagcagttgg ccacatctcc
     2221 tccacagtcg agaattcgag aacaaatgga ttctactgtg ctgtctttat gtaaccagta
     2281 ttctagccag ggagtgatgc cactcatcag tgggtggagc gtctacctca gttaatacta
     2341 tcagtaattc cctaaggcat gcccagaggc tcatcttgta gtggttctag atgttgtcat
     2401 gctgacagtc cagtcccact aaccaggagg actttccagt ggtcctctgc ttcgggtacg
     2461 tacccatttc tgtgggtacc tattaatatc tactctggta tatgctgtgt ttgagggaca
     2521 aaaaggtcac agagacctgc atatggggag gtaacattgt tgaggatccc actctggcat
     2581 tcatgttgtc gtaaagtaag cagttatggc acaagacagg catcttgggc tagggctaga
     2641 agtctgtaga cgatagaact ggcaagggac tgaagggaca cccaggcaaa ggtcacattt
     2701 ccagccaagc ccagtgtggt ggatcatgcc tgtaatccta gcactcagct aaggcaggag
     2761 aatcactatg aattcaaggc cagtctgggc tacagagtga gagcacaacc ctcccccaac
     2821 ccccaaagaa gtatgaaaaa gaatgagttt tagggatgaa actgcagtgt taaagctagc
     2881 gctggactcg gatgaagcct tgagtgaatc cattgctggg gtcacgggtg ggtgatgcat
     2941 gcagtggtgg tgcacactat aatcccagca ctcgggaggc agaggcaggc ggatttctga
     3001 gtttgaggcc agcctggtct acagagtgag gtccagagca gccagggcta cagagaaacc
     3061 ctgtctcgaa aaacaaaaaa taggaacagt acacaactga ctattgtact tatttaggcc
     3121 aatgttgttt aaagtacaag tctcagcctg tttgagctga aaaggcagct tgatggttta
     3181 atgcattgta tcagcattaa ataaacaaac aaacaaaaaa a
//
