LOCUS       XM_011241681            5051 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus interleukin 16 (Il16), transcript variant
            X4, mRNA.
ACCESSION   XM_011241681
VERSION     XM_011241681.3
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000073.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Aug 8, 2019 this sequence version replaced XM_011241681.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5051
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="7"
     gene            1..5051
                     /gene="Il16"
                     /gene_synonym="mKIAA4048"
                     /note="interleukin 16; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 5 mRNAs, 30 ESTs, 236
                     long SRA reads, 6 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     5 samples with support for all annotated introns"
                     /db_xref="GeneID:16170"
                     /db_xref="MGI:MGI:1270855"
     CDS             257..4225
                     /gene="Il16"
                     /gene_synonym="mKIAA4048"
                     /codon_start=1
                     /product="pro-interleukin-16 isoform X3"
                     /protein_id="XP_011239983.1"
                     /db_xref="GeneID:16170"
                     /db_xref="MGI:MGI:1270855"
                     /translation="MEPHGHSGKSRKSTKFRSISRSLILCNAKTSDDGSSPDEKYPDP
                     FETSLCQGKEGFFHSSMQLADTFEAGLSNIPDLALASDSAQLAAAGSDRGKHCRKMFF
                     MKESSSTSSKEKSGKPEAQSSSFLFPKACHQRTRSNSTSVNPYSAGEIDFPMTKKSAA
                     PTDRQPYSLCSNRKSLSQQLDYPILGTARPTRSLSTAQLGQLSGGLQASVISNIVLMK
                     GQAKGLGFSIVGGKDSIYGPIGIYVKSIFAGGAAAADGRLQEGDEILELNGESMAGLT
                     HQDALQKFKQAKKGLLTLTVRTRLTTPPSLCSHLSPPLCRSLSSSTCGAQDSSPFSLE
                     SPASPASTAKPNYRIMVEVSLKKEAGVGLGIGLCSIPYFQCISGIFVHTLSPGSVAHL
                     DGRLRCGDEIVEINDSPVHCLTLNEVYTILSHCDPGPVPIIVSRHPDPQVSEQQLKEA
                     VAQAVEGVKFGKDRHQWSLEGVKRLESSWHGRPTLEKEREKHSAPPHRRAQKIMVRSS
                     SDSSYMSGSPGGSPCSAGAEPQPSEREGSTHSPSLSPGEEQEPCPGVPSRPQQESPPL
                     PESLERESHPPLRLKKSFEILVRKPTSSKPKPPPRKYFKNDSEPQKKLEEKEKVTDPS
                     GHTLPTCSQETRELLPLLLQEDTAGRAPCTAACCPGPAASTQTSSSTEGESRRSASPE
                     TPASPGKHPLLKRQARMDYSFDITAEDPWVRISDCIKNLFSPIMSENHSHTPLQPNTS
                     LGEEDGTQGCPEGGLSKMDAANGAPRVYKSADGSTVKKGPPVAPKPAWFRQSLKGLRN
                     RAPDPRRPPEVASAIQPTPVSRDPPGPQPQASSSIRQRISSFENFGSSQLPDRGVQRL
                     SLQPSSGETTKFPGKQDGGRFSGLLGQGATVTAKHRQTEVESMSTTFPNSSEVRDPGL
                     PESPPPGQRPSTKALSPDPLLRLLTTQSEDTQGPGLKMPSQRARSFPLTRTQSCETKL
                     LDEKASKLYSISSQLSSAVMKSLLCLPSSVSCGQITCIPKERVSPKSPCNNSSAAEGF
                     GEAMASDTGFSLNLSELREYSEGLTEPGETEDRNHCSSQAGQSVISLLSAEELEKLIE
                     EVRVLDEATLKQLDSIHVTILHKEEGAGLGFSLAGGADLENKVITVHRVFPNGLASQE
                     GTIQKGNEVLSINGKSLKGATHNDALAILRQARDPRQAVIVTRRTTVEATHDLNSSTD
                     SAASASAASDISVESKEATVCTVTLEKTSAGLGFSLEGGKGSLHGDKPLTINRIFKGT
                     EQGEMVQPGDEILQLAGTAVQGLTRFEAWNVIKALPDGPVTIVIRRTSLQCKQTTASA
                     DS"
ORIGIN      
        1 tcagaaggga gaatggcttg tcgttggtca cgcaagcagt gcacagcaga gccgaggaca
       61 caggcttctg agctctcaga gccagtgttg tgttcttcgg tgcttctgcc tcctgttgcc
      121 aggattgtga gcacttgagc ccagactgat acaagggact catgcagtgg cagctaaatc
      181 cagttcatct gtcactcacc ggccaaggcc tggagaacag gagaggaaga agcgtggcct
      241 cacttcctct ctgaggatgg aaccccacgg ccactccgga aagagccgga aatccacgaa
      301 atttcgctcc atctcccgtt ccctgatcct ctgtaacgcc aagaccagtg atgacggctc
      361 cagcccagat gagaagtacc ctgacccttt tgagacttca ctgtgccagg gcaaggaggg
      421 tttctttcac tcctccatgc agctggcaga cacatttgag gctgggctca gcaatatccc
      481 agacctcgca ctggcctcgg actctgctca actcgcagca gctgggagcg atcgaggcaa
      541 gcactgcagg aagatgttct tcatgaagga atcttcttca acttcctcta aagaaaagtc
      601 tggaaaacca gaagcacaaa gtagcagctt cctgtttcct aaagcttgcc accaaaggac
      661 acgcagcaac tccaccagtg ttaaccccta cagtgctgga gaaatcgatt ttccaatgac
      721 caagaaatct gcagctccca ccgaccggca gccctactcc ctctgtagca acaggaagtc
      781 cctctctcaa caactggact acccaatttt gggcactgca agaccaactc ggtcactgag
      841 cacagctcag ctcgggcagc tgtctggggg tctgcaggcg tcagtcatct ccaacatagt
      901 gctgatgaag ggccaagcaa agggcctggg cttcagcatt gttggaggaa aggacagcat
      961 ttacggccct attggaattt atgtgaagag catctttgca gggggagcag ctgcagctga
     1021 tggacggctt caggaaggtg atgaaattct ggaactcaat ggtgaatcaa tggctggcct
     1081 aacacaccag gatgctttgc agaagtttaa gcaagccaag aaggggctgc tgactctgac
     1141 agtgaggact cgcctgacaa cacccccttc actatgcagc cacctgtcac ctcctctgtg
     1201 ccgttccctg agctccagca catgtggtgc ccaggacagc agccccttct ccttggaaag
     1261 tccagcgtct cctgctagca ctgccaaacc caactacaga atcatggtgg aggtgtctct
     1321 gaagaaagag gcaggtgttg gcctggggat cggcctgtgc agcatcccct acttccagtg
     1381 catctcaggc atcttcgttc acacactgtc accaggatcc gtggcacatc ttgatggacg
     1441 gctgaggtgt ggtgatgaga ttgtggaaat caatgattct ccagtgcact gcctgactct
     1501 caatgaagtc tacacaatcc tgagccactg tgaccctggc ccagttccca tcatcgtaag
     1561 ccgacatccg gacccacagg tttctgaaca gcaactcaag gaagctgtgg ctcaggctgt
     1621 ggaaggcgtc aagtttggga aggacaggca ccagtggagc ttggaaggtg tcaaaaggct
     1681 ggagagcagc tggcatgggc ggcctacctt ggagaaagaa cgtgagaagc actcagcgcc
     1741 cccacatcga agggcccaga agatcatggt ccgatccagc agtgacagca gctacatgtc
     1801 tgggtcacca gggggaagtc cctgcagtgc aggtgcggag ccacagcctt ctgagaggga
     1861 aggcagcaca cacagtccca gcctgtcccc aggggaggag caagagccgt gcccaggggt
     1921 cccatccagg cctcagcagg agagcccacc ccttcctgag agcttggaaa gagagagcca
     1981 cccaccactg agactgaaga aatcttttga gattttggtg agaaagccga catcctccaa
     2041 acccaagcct ccacccagaa aatactttaa aaatgacagc gagcctcaga agaaactgga
     2101 ggagaaagag aaggtcacag acccttctgg gcacaccttg cccacctgca gccaggaaac
     2161 cagagagctg ctgccactgt tgctacagga agacactgca gggagagccc cctgcaccgc
     2221 tgcctgctgc ccaggacctg cagccagcac gcagacttca tcctccacag aaggagagtc
     2281 aaggaggagt gccagcccag agactccagc atccccagga aaacacccgc tgctgaagag
     2341 gcaggcacgg atggactata gctttgatat cactgctgaa gacccttggg ttagaatttc
     2401 cgactgcatc aaaaacttat ttagccccat catgagtgag aaccatagcc atacaccact
     2461 acagcccaac accagccttg gtgaagagga tgggacacag ggctgtccag aggggggcct
     2521 gtcaaaaatg gacgctgcca atggtgctcc cagagtttac aagtcagcag atggcagcac
     2581 tgtgaagaag gggcctccag tagccccaaa gccagcttgg tttcggcaga gcttgaaagg
     2641 tctgaggaat cgtgccccag accccagaag acccccggaa gtagcctcag ccattcagcc
     2701 tacaccagtt tctagggacc caccagggcc acagcctcag gcctcttcct ccatcaggca
     2761 gagaatcagc tcctttgaaa actttggctc ctcacaattg ccagacagag gagtccagag
     2821 actgagcctg cagcccagct ctggggagac caccaaattt ccaggaaagc aagatggagg
     2881 acgattttct ggtctcctgg gtcaaggggc tacagtaaca gctaagcaca gacagacaga
     2941 ggtagagtct atgtccacaa ccttccctaa ctcctcagag gtcagggacc caggtttgcc
     3001 tgagtctcct cccccaggtc agcgacccag cacaaaagct ttgtctccag accctctctt
     3061 gagactgttg actacacaat ccgaggatac tcaaggacca ggtctcaaga tgccaagtca
     3121 gcgggcacgg agcttccccc tgaccaggac ccagtcctgc gagacaaagc tgttggatga
     3181 aaaggccagt aagctttact ccatcagcag ccagctatca tctgctgtca tgaaatccct
     3241 gctgtgcctt ccatcttcag tctcttgtgg ccagatcacc tgcatcccca aggagagggt
     3301 gtctccaaag tcaccttgca acaacagctc agctgcagag ggttttggtg aagccatggc
     3361 ctctgacaca gggttctctc tcaacctttc agagctgaga gaatattcag aaggtctcac
     3421 agagcccggg gaaaccgagg acaggaacca ctgttcttct caggccggcc agtcggttat
     3481 ctccttgctg agtgcagaag aactggaaaa actcattgag gaagtgagag ttctagatga
     3541 agcaacattg aagcaattag acagcattca tgtcaccatc ttacacaagg aagaaggtgc
     3601 tggtcttgga ttcagcttgg caggaggggc agatctagaa aacaaggtga tcacggttca
     3661 cagagtgttt ccaaatgggc tggcttccca ggaaggcaca attcagaaag gcaacgaggt
     3721 tctttccatc aatggcaaat ctctcaaggg cgctacccac aatgatgccc tagctatcct
     3781 tcgccaagct cgggacccaa ggcaagctgt gattgtcacc aggaggacaa ctgtggaggc
     3841 cactcatgac ctgaactcct ctactgactc cgcagcctca gcttcagcag ccagtgacat
     3901 ttctgtagaa tctaaggagg ccactgtctg cacagtgaca ctggagaaga cctctgcagg
     3961 gctgggcttc agcctggagg gaggaaaggg ctccctgcat ggtgacaagc ctcttaccat
     4021 aaacaggatt ttcaaaggga cagaacaggg tgagatggtg cagccagggg atgagatctt
     4081 gcagctcgct ggcactgctg tgcaaggtct tacccggttt gaagcctgga atgtcatcaa
     4141 ggcattgcct gatggacctg tcactatagt catcagaagg accagcctcc agtgcaagca
     4201 gacaacagct tctgcagact cataggcagg cggccaatgc taagacaaag caggagctgg
     4261 aagctccagt aatcgctgat tctcagggtc tctgctgccc acctcaccca ggctggggaa
     4321 agcccaggtg tgcctctggt agctgctgct caggtttgga cctcctggca cactgcccat
     4381 caagagggct gttccaaatg tcaggacaga gtcacgcaga ggtggctgtt acgaaccacg
     4441 tcaactgtat atagacagct tagtgataat accctggtgc cgtaataaaa tggttgtatt
     4501 gcagtttccc aagaaacaaa tgacctgatt tggaaatccc ctagggacta tgaaagccac
     4561 cccatggcag tgcttttttt ttttttctct catgcatctc atgtcttgga ggggagctcc
     4621 ttactatcag ctcgagcagg tcaaggctgg gctggggtcc tgtgaagggt cactgcttgt
     4681 ggctctcccc agaggggctg gctgatgact ggggaagttt cttcacggct ggtgcttctg
     4741 caccatgccg attgattctg caccacactg cccagccaca ctacagtcag gtgcgggtgc
     4801 atcttttaaa tgttctgcct ttgaagactc ataacattgc tcctgtcaca ctcctgccga
     4861 gagcaggcaa acacctgcct gggtttaagg aaaggggata agttgttaga aacagctctg
     4921 tgagatgcag cctgccatga agaacacatt caaacacata gaagactttt tggttgggtc
     4981 gagagcctag aaggagtgga accagaagac agagggtatg agcataaaat aaaattattg
     5041 ttaatgtctt a
//
