LOCUS       NM_001145800            4153 bp    mRNA    linear   ROD 26-JUN-2024
DEFINITION  Mus musculus immunoglobulin superfamily, member 9 (Igsf9),
            transcript variant 2, mRNA.
ACCESSION   NM_001145800
VERSION     NM_001145800.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4153)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 4153)
  AUTHORS   Wang,X.X., Zhang,S., Dong,P.P., Li,Y.H., Zhang,L., Shi,S.H.,
            Yu,Z.Q. and Chen,S.
  TITLE     MRCKbeta links Dasm1 to actin rearrangements to promote dendrite
            development
  JOURNAL   J Biol Chem 296, 100730 (2021)
   PUBMED   33933448
  REMARK    GeneRIF: MRCKbeta links Dasm1 to actin rearrangements to promote
            dendrite development.
REFERENCE   3  (bases 1 to 4153)
  AUTHORS   Bibollet-Bahena,O., Okafuji,T., Hokamp,K., Tear,G. and
            Mitchell,K.J.
  TITLE     A dual-strategy expression screen for candidate connectivity labels
            in the developing thalamus
  JOURNAL   PLoS One 12 (5), e0177977 (2017)
   PUBMED   28558017
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 4153)
  AUTHORS   Gu,Z., Imai,F., Kim,I.J., Fujita,H., Katayama,Ki., Mori,K.,
            Yoshihara,Y. and Yoshida,Y.
  TITLE     Expression of the immunoglobulin superfamily cell adhesion
            molecules in the developing spinal cord and dorsal root ganglion
  JOURNAL   PLoS One 10 (3), e0121550 (2015)
   PUBMED   25826454
  REMARK    Publication Status: Online-Only
REFERENCE   5  (bases 1 to 4153)
  AUTHORS   Mishra,A., Traut,M.H., Becker,L., Klopstock,T., Stein,V. and
            Klein,R.
  TITLE     Genetic evidence for the adhesion protein IgSF9/Dasm1 to regulate
            inhibitory synapse development independent of its intracellular
            domain
  JOURNAL   J Neurosci 34 (12), 4187-4199 (2014)
   PUBMED   24647940
  REMARK    GeneRIF: These results provide genetic evidence for a specific role
            of IgSF9 in inhibitory synapse development/maintenance, presumably
            by its cell adhesion molecule-like activity.
REFERENCE   6  (bases 1 to 4153)
  AUTHORS   Blackshaw,S., Harpavat,S., Trimarchi,J., Cai,L., Huang,H.,
            Kuo,W.P., Weber,G., Lee,K., Fraioli,R.E., Cho,S.H., Yung,R.,
            Asch,E., Ohno-Machado,L., Wong,W.H. and Cepko,C.L.
  TITLE     Genomic analysis of mouse retinal development
  JOURNAL   PLoS Biol 2 (9), E247 (2004)
   PUBMED   15226823
REFERENCE   7  (bases 1 to 4153)
  AUTHORS   Okazaki,N., Kikuno,R., Ohara,R., Inamoto,S., Koseki,H., Hiraoka,S.,
            Saga,Y., Nagase,T., Ohara,O. and Koga,H.
  TITLE     Prediction of the coding sequences of mouse homologues of KIAA
            gene: III. the complete nucleotide sequences of 500 mouse
            KIAA-homologous cDNAs identified by screening of terminal sequences
            of cDNA clones randomly sampled from size-fractionated libraries
  JOURNAL   DNA Res 10 (4), 167-180 (2003)
   PUBMED   14621295
REFERENCE   8  (bases 1 to 4153)
  AUTHORS   Doudney,K., Murdoch,J.N., Braybrook,C., Paternotte,C., Bentley,L.,
            Copp,A.J. and Stanier,P.
  TITLE     Cloning and characterization of Igsf9 in mouse and human: a new
            member of the immunoglobulin superfamily expressed in the
            developing nervous system
  JOURNAL   Genomics 79 (5), 663-670 (2002)
   PUBMED   11991715
REFERENCE   9  (bases 1 to 4153)
  AUTHORS   Kibar,Z., Vogan,K.J., Groulx,N., Justice,M.J., Underhill,D.A. and
            Gros,P.
  TITLE     Ltap, a mammalian homolog of Drosophila Strabismus/Van Gogh, is
            altered in the mouse neural tube mutant Loop-tail
  JOURNAL   Nat Genet 28 (3), 251-255 (2001)
   PUBMED   11431695
REFERENCE   10 (bases 1 to 4153)
  AUTHORS   Doudney,K., Murdoch,J.N., Paternotte,C., Bentley,L., Gregory,S.,
            Copp,A.J. and Stanier,P.
  TITLE     Comparative physical and transcript maps of approximately 1 Mb
            around loop-tail, a gene for severe neural tube defects on distal
            mouse chromosome 1 and human chromosome 1q22-q23
  JOURNAL   Genomics 72 (2), 180-192 (2001)
   PUBMED   11401431
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC121551.11 and BC040281.1.
            
            Transcript Variant: This variant (2) differs in the 5' UTR compared
            to variant 1. Both variants encode the same protein.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK145121.1, SRR9219380.1826.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-48                AC121551.11        94490-94537         c
            49-4153             BC040281.1         75-4179
FEATURES             Location/Qualifiers
     source          1..4153
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="1"
                     /map="1 79.86 cM"
     gene            1..4153
                     /gene="Igsf9"
                     /gene_synonym="644ETD8; Dasm1; Kiaa1355-hp; mKIAA1355;
                     Ncaml; NRT1"
                     /note="immunoglobulin superfamily, member 9"
                     /db_xref="GeneID:93842"
                     /db_xref="MGI:MGI:2135283"
     exon            1..48
                     /gene="Igsf9"
                     /gene_synonym="644ETD8; Dasm1; Kiaa1355-hp; mKIAA1355;
                     Ncaml; NRT1"
                     /inference="alignment:Splign:2.1.0"
     exon            49..314
                     /gene="Igsf9"
                     /gene_synonym="644ETD8; Dasm1; Kiaa1355-hp; mKIAA1355;
                     Ncaml; NRT1"
                     /inference="alignment:Splign:2.1.0"
     exon            315..503
                     /gene="Igsf9"
                     /gene_synonym="644ETD8; Dasm1; Kiaa1355-hp; mKIAA1355;
                     Ncaml; NRT1"
                     /inference="alignment:Splign:2.1.0"
     exon            504..656
                     /gene="Igsf9"
                     /gene_synonym="644ETD8; Dasm1; Kiaa1355-hp; mKIAA1355;
                     Ncaml; NRT1"
                     /inference="alignment:Splign:2.1.0"
     exon            657..811
                     /gene="Igsf9"
                     /gene_synonym="644ETD8; Dasm1; Kiaa1355-hp; mKIAA1355;
                     Ncaml; NRT1"
                     /inference="alignment:Splign:2.1.0"
     exon            812..929
                     /gene="Igsf9"
                     /gene_synonym="644ETD8; Dasm1; Kiaa1355-hp; mKIAA1355;
                     Ncaml; NRT1"
                     /inference="alignment:Splign:2.1.0"
     exon            930..1071
                     /gene="Igsf9"
                     /gene_synonym="644ETD8; Dasm1; Kiaa1355-hp; mKIAA1355;
                     Ncaml; NRT1"
                     /inference="alignment:Splign:2.1.0"
     exon            1072..1217
                     /gene="Igsf9"
                     /gene_synonym="644ETD8; Dasm1; Kiaa1355-hp; mKIAA1355;
                     Ncaml; NRT1"
                     /inference="alignment:Splign:2.1.0"
     exon            1218..1360
                     /gene="Igsf9"
                     /gene_synonym="644ETD8; Dasm1; Kiaa1355-hp; mKIAA1355;
                     Ncaml; NRT1"
                     /inference="alignment:Splign:2.1.0"
     exon            1361..1501
                     /gene="Igsf9"
                     /gene_synonym="644ETD8; Dasm1; Kiaa1355-hp; mKIAA1355;
                     Ncaml; NRT1"
                     /inference="alignment:Splign:2.1.0"
     exon            1502..1618
                     /gene="Igsf9"
                     /gene_synonym="644ETD8; Dasm1; Kiaa1355-hp; mKIAA1355;
                     Ncaml; NRT1"
                     /inference="alignment:Splign:2.1.0"
     exon            1619..1769
                     /gene="Igsf9"
                     /gene_synonym="644ETD8; Dasm1; Kiaa1355-hp; mKIAA1355;
                     Ncaml; NRT1"
                     /inference="alignment:Splign:2.1.0"
     exon            1770..1893
                     /gene="Igsf9"
                     /gene_synonym="644ETD8; Dasm1; Kiaa1355-hp; mKIAA1355;
                     Ncaml; NRT1"
                     /inference="alignment:Splign:2.1.0"
     exon            1894..2069
                     /gene="Igsf9"
                     /gene_synonym="644ETD8; Dasm1; Kiaa1355-hp; mKIAA1355;
                     Ncaml; NRT1"
                     /inference="alignment:Splign:2.1.0"
     exon            2070..2320
                     /gene="Igsf9"
                     /gene_synonym="644ETD8; Dasm1; Kiaa1355-hp; mKIAA1355;
                     Ncaml; NRT1"
                     /inference="alignment:Splign:2.1.0"
     exon            2321..2405
                     /gene="Igsf9"
                     /gene_synonym="644ETD8; Dasm1; Kiaa1355-hp; mKIAA1355;
                     Ncaml; NRT1"
                     /inference="alignment:Splign:2.1.0"
     exon            2406..2582
                     /gene="Igsf9"
                     /gene_synonym="644ETD8; Dasm1; Kiaa1355-hp; mKIAA1355;
                     Ncaml; NRT1"
                     /inference="alignment:Splign:2.1.0"
     exon            2583..2625
                     /gene="Igsf9"
                     /gene_synonym="644ETD8; Dasm1; Kiaa1355-hp; mKIAA1355;
                     Ncaml; NRT1"
                     /inference="alignment:Splign:2.1.0"
     exon            2626..3486
                     /gene="Igsf9"
                     /gene_synonym="644ETD8; Dasm1; Kiaa1355-hp; mKIAA1355;
                     Ncaml; NRT1"
                     /inference="alignment:Splign:2.1.0"
     exon            3487..3614
                     /gene="Igsf9"
                     /gene_synonym="644ETD8; Dasm1; Kiaa1355-hp; mKIAA1355;
                     Ncaml; NRT1"
                     /inference="alignment:Splign:2.1.0"
     exon            3615..4135
                     /gene="Igsf9"
                     /gene_synonym="644ETD8; Dasm1; Kiaa1355-hp; mKIAA1355;
                     Ncaml; NRT1"
                     /inference="alignment:Splign:2.1.0"
     regulatory      4115..4120
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Igsf9"
                     /gene_synonym="644ETD8; Dasm1; Kiaa1355-hp; mKIAA1355;
                     Ncaml; NRT1"
                     /note="hexamer: AATAAA"
     polyA_site      4135
                     /gene="Igsf9"
                     /gene_synonym="644ETD8; Dasm1; Kiaa1355-hp; mKIAA1355;
                     Ncaml; NRT1"
                     /note="major polyA site"
ORIGIN      
        1 gccccctatt gtgtggctgc gagagcagag ctgtgctgtg cagagcagat ctggtggccc
       61 tccagacagg aacagctccc tcgggtgttg agtgagctag gcaccaactg gaagagtgag
      121 agctgaaacg ggttgcctga ggcggatcag aactcaactg atgctctctg ggattgccgg
      181 gcagcggaca ttcctccggc ccctccatct gggctcctgt gaataggagg ggccgggcaa
      241 gcaggccagc tgggctatga tttggtgtct ccgtctgacc gtcctcagcc tgatcatcag
      301 ccagggggct gacggtcgaa gaaagcctga ggtggtctct gtggtgggcc gggctgggga
      361 gagtgcagtg ctgggctgtg acttgctgcc tccagctggc cacccccctc tgcatgtcat
      421 cgagtggctg cgctttggat tcctgcttcc catcttcatc cagttcggcc tctactctcc
      481 ccgaattgac cccgattacg tgggacgagt ccggctgcag acaggagcat ctctccagat
      541 tgaggggctc cgggtggaag accagggttg gtacgagtgc cgtgtgctct tcctggacca
      601 acacagccct gaacaggatt ttgccaacgg ctcctgggtg cacctgacag tcaattcgcc
      661 ccctcagttc caggagacac ctcccttagt tctggaagtc aaggagctgg aggcggttac
      721 cttgcgctgt gtggcccgtg gcagccctca gccttatgtg acttggaaat tccgaggaca
      781 agaccttggc aagggccagg gtcaggtgca agtgcagaat ggaacactgt ggatccgtcg
      841 ggtggagcga ggcagcgctg gagactacac ctgccaagcc tccagctccg agggcagcat
      901 cacccacgcc acccagctgt tggtgctagg accccctgtc attgtggtgc cccccagcaa
      961 cagtacagtc aactcctctc aggatgtttc cttggcctgc cgggctgagg cataccctgc
     1021 taacctcacc tacagctggt tccaggatgg tgtcaatgtc ttccatatca gccgcttaca
     1081 gtctcgagtg cgcatcctgg tagacgggag cctgtggcta caagccactc agcctgatga
     1141 cgccggccac tatacctgtg ttcccagcaa tggctttctg catccaccgt cagcttctgc
     1201 ctatctcact gtgctctacc cagcccaggt gacagtcatg cctcccgaga cacccctgcc
     1261 cactggcatg cgtggggtga tccggtgtcc ggttcgtgct aatcccccac tactgtttgt
     1321 cacctggacc aaagacggac aggccttgca gctggacaag ttccctggct ggtccctggg
     1381 cccagaaggt tccctcatca ttgccctggg gaatgagaat gccttgggag aatactcctg
     1441 caccccctac aacagtcttg gtactgctgg accctcccct gtgacccagg tgctgctcaa
     1501 ggctcccccg gcttttatag accagcccaa ggaagaatat ttccaagaag tagggcggga
     1561 gctactcatc ccgtgctccg cccggggaga ccctcctcct attgtctctt gggccaaggt
     1621 gggccggggg ctgcagggcc aggcccaggt ggacagcaac aacagcctcg tccttcgacc
     1681 cctgaccaag gaggcccagg gacgatggga atgcagtgcc agcaatgctg tagcccgtgt
     1741 gaccacttcc accaatgtat atgtgctagg caccagcccc catgtcgtca ccaatgtgtc
     1801 tgtggtacct ttacccaagg gtgccaatgt ctcttgggag cctggctttg atggtggcta
     1861 tctgcagaga ttcagtgtct ggtatacccc actagccaag cgtcctgacc gagcccacca
     1921 tgactgggta tctctggctg tgcctatcgg ggctacacac ctcctagtgc cagggctgca
     1981 ggctcacgcg cagtatcagt tcagtgtcct tgctcagaat aaactgggca gtgggccctt
     2041 cagtgagatt gtcctgtcta taccagaagg gcttcctacc acaccggctg cccctgggct
     2101 tcctccaaca gagataccac ctcccctgtc ccctcctaga ggtttggtgg cagtgaggac
     2161 accccggggg gtacttctgc attgggatcc cccagaactc atccctggga ggctggatgg
     2221 ctacatcctg gagggacggc aaggctccca aggctgggag atcctggacc aaggtgtggc
     2281 gggcacagaa atccagctgc tggtgcctgg cctcatcaag gacgttctct atgagtttcg
     2341 cctcgtggcc ttcgctgata gctacgtcag tgaccccagc aacgtagcca acatctccac
     2401 ttccggcctg gaggtgtacc cctcccgcac acagctacca ggtctcctgc cccagcctgt
     2461 attggctggt gttgtgggtg gagtctgctt cttgggcgtg gcggtccttg tgagcatcct
     2521 agctgcctgc ctgatgaatc ggcgcagggc tgcccgacgc caccgaaaac gtctgcgcca
     2581 ggatccgcct ctgatcttct ctccacgtgg gaagtcaggc tcacactctg ctcctggctc
     2641 aggcagccct gacagcgtga ccaagttcaa gctccaaggc tccccagttc ccagcctacg
     2701 ccagagtctg ctctgggggg agcctgctcg accgcctagc cctcacccgg attctccact
     2761 tggccgggga cccttaccat tagagcccat ttgcaggggc ccagatgggc gctttgtgat
     2821 gggacccact gtggccccct cacaagaaaa gttatgtctg gagcgctcag aacctcggac
     2881 ctcagctaaa cgcttggctc agtcctttga ctgtagcagt agcagcccca gtggggtccc
     2941 acaacccctc tgcattacag acatcagccc tgtggggcag cctcttgcag ccgtgcctag
     3001 ccccctacca ggtccaggac ccctgctcca gtatctgagc ctacccttct tccgagagat
     3061 gaatgtggac ggggactggc cacctcttga ggagcccacg cctgctccgc ctccagattt
     3121 catggatagt cagccctgtc ccacctcatc tttccttcca ccaccagact cacctcctgc
     3181 aaatctcagg gcagtgcttc ctgggacact gatgggggtc ggggtctcct cagagccccc
     3241 ttacacagct ttggctgatt ggactctgag ggagcgggtc ttgccgggcc ttctttctgc
     3301 tgcccctcgt ggtagcctca ccagccagag cagtgggagg ggcagcgcct ccttcctgcg
     3361 ccctccctcc acagccccct ccgcaggggg aagctacctc agtccagctc caggagacac
     3421 aagcagctgg gccagtggcc cagaaaggtg gccccgcagg gagcatgtgg tgacagtcag
     3481 caaaaggagg aacacctctg tggatgagaa ctatgaatgg gattcggaat tcccagggga
     3541 catggagctg ctagagacct ggcacccagg cttggccagt tctcggaccc atcctgaact
     3601 tgagccagag ttaggtgtca agactccaga ggagagctgt ctcctgaacc caacccatgc
     3661 tgccggcccc gaggcccgct gtgctgccct tcgggaggaa ttcctagctt tccgcagacg
     3721 cagggatgct accagggccc ggctaccagc ctatcagcag tccatctctt accctgaaca
     3781 ggctactctg ctatgagccc gcttagtgtg aaactaagaa aggcttatat ggatttgcaa
     3841 aggagtccaa gactttggct ccaagctggg gcactgcccc tacctctctg tgtctcggtg
     3901 gcctggtggt aggcttgagt gagcttggta tagagttgga tgtactgact ctttaattag
     3961 tctgggagct gaacaggaat gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt
     4021 gtgtgtgtgt gtgcgtgcgc gcgcgcaagc gcgcgttcga aagtggtgtt tatggtgtgg
     4081 gtgcaggttt ctttttttta aaaaacaggt gaataataaa tgtctggaaa ccgttaaaaa
     4141 aaaaaaaaaa aaa
//
