LOCUS       NM_030691               2133 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus immunoglobulin superfamily, member 6 (Igsf6), mRNA.
ACCESSION   NM_030691
VERSION     NM_030691.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2133)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 2133)
  AUTHORS   Shu,K.X., Wu,L.X., Xie,Y.F., Zhao,J.F., Liang,Y.L. and Li,B.
  TITLE     Characterization of the human PAP1 gene and its homologue possible
            involvement in mouse embryonic development
  JOURNAL   Colloids Surf B Biointerfaces 52 (1), 22-30 (2006)
   PUBMED   16837177
  REMARK    GeneRIF: The IGSF6 expression is different in mouse embryos of the
            different ages. In situ hybridization performed on mice embryos
            sections showed the differential presence of IGSF6 in developing
            lung and kidney.
REFERENCE   3  (bases 1 to 2133)
  AUTHORS   Bates,E.E., Kissenpfennig,A., Peronne,C., Mattei,M.G., Fossiez,F.,
            Malissen,B. and Lebecque,S.
  TITLE     The mouse and human IGSF6 (DORA) genes map to the inflammatory
            bowel disease 1 locus and are embedded in an intron of a gene of
            unknown function
  JOURNAL   Immunogenetics 52 (1-2), 112-120 (2000)
   PUBMED   11132146
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AJ278575.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AJ278575.1, BC057951.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164135, SAMN01164143
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2133
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="129/Ola"
                     /db_xref="taxon:10090"
                     /chromosome="7"
                     /map="7 65.07 cM"
     gene            1..2133
                     /gene="Igsf6"
                     /note="immunoglobulin superfamily, member 6"
                     /db_xref="GeneID:80719"
                     /db_xref="MGI:MGI:1891393"
     exon            1..92
                     /gene="Igsf6"
                     /inference="alignment:Splign:2.1.0"
     CDS             26..739
                     /gene="Igsf6"
                     /function="cell surface receptor"
                     /codon_start=1
                     /product="immunoglobulin superfamily member 6 precursor"
                     /protein_id="NP_109616.1"
                     /db_xref="CCDS:CCDS21801.1"
                     /db_xref="GeneID:80719"
                     /db_xref="MGI:MGI:1891393"
                     /translation="MGPVSARRSRLRPEISLILFQVGMVGACTVYVLQPGYLEVDYGS
                     DAVTMECNFSTVGCPPVPPKSLWFRCGTHQPEALCLDGCRNEADKFTVKETLDPDQVF
                     LTVNRLSPNDSAIYICGIAFPNELSPSAKHVGKGTTLVVRERLFSKEVRSFLIVLLAL
                     LSVYITGVCVTFIVLFKSKSNGPRSRETKGSKKKSARRIFQEIAQELYHKRYVETSHL
                     PEQEGTDENRKALPNPGRA"
     exon            93..452
                     /gene="Igsf6"
                     /inference="alignment:Splign:2.1.0"
     exon            453..556
                     /gene="Igsf6"
                     /inference="alignment:Splign:2.1.0"
     exon            557..604
                     /gene="Igsf6"
                     /inference="alignment:Splign:2.1.0"
     exon            605..682
                     /gene="Igsf6"
                     /inference="alignment:Splign:2.1.0"
     exon            683..2133
                     /gene="Igsf6"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2110..2115
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Igsf6"
                     /note="hexamer: AATAAA"
     polyA_site      2130
                     /gene="Igsf6"
                     /note="major polyA site"
ORIGIN      
        1 ggagaaggcg gcacatgcag cagagatggg ccccgtgagt gcacgcagga gccgcctccg
       61 gccagagatc agcctgatcc ttttccaagt cggtatggtg ggtgcctgca ctgtgtatgt
      121 gctgcaacca ggttacctag aagtggacta cggttctgac gccgtcacca tggagtgtaa
      181 cttttctaca gttggatgcc ctccagtgcc accaaagagc ttgtggtttc gctgtggtac
      241 tcaccagcct gaagctctgt gcttggatgg atgcagaaat gaggcagaca agttcacagt
      301 gaaagaaacc ctggacccgg accaagtctt cctcactgtt aacaggctgt ctccaaatga
      361 cagtgcaatt tacatctgtg gaatagcatt tcccaatgaa ctgtcaccaa gcgctaaaca
      421 cgttggaaag gggactacac tggtggtaag agaaagactt ttcagcaagg aggtgcgcag
      481 tttcctgata gtgctcttag ctctgctctc tgtctacatc accggtgtgt gtgtgacctt
      541 catagtcctc ttcaaatcaa aatctaacgg tccaagaagc agagaaacca aaggctcaaa
      601 aaagaagagt gctcggcgta tctttcagga aattgctcaa gaattatacc ataagagata
      661 tgtggaaaca agtcatctac ctgagcaaga gggcactgat gaaaacagaa aagcactccc
      721 caaccctgga agagcataga tgtgcttgct ttttacttaa gccactgaca gtgcaactcc
      781 agaatctacg gcaatgtgaa tggacataca gcaatcaaga caacatcaaa gagagctggg
      841 gtatagctca gctggcagag tgcttgccta gtaggcacaa agccctagct ttgatcccca
      901 gcaccacata aactcatcaa agtgaaacaa gcctgtattc ccaacattgt gaagtataaa
      961 gagtcagaag ttcaaggtca tccctgagta taggattaac ctgaagtcag agacacatca
     1021 tcttgtctca aaagcaaccg tgaccaccaa aagaaaagga caggacaagt gggaaaacag
     1081 ccggcctcgc cagacggcag agcataagta gctgtcacta attgtagcta cagaatatga
     1141 aaacctcaag aaaactcaac tggaggacct tttttctaat tttccaagaa tagtctaaaa
     1201 agccccactt tgaagaaaaa acttcatctt aacagttttt aaaaactgtt accatgttta
     1261 tgttgtcagt ctacccaaca tactagatgt gtgataggca ttaactgaga gaaggcttca
     1321 agttaaacca cagatctcag ttctgagggg aaataaatac tttcctgagt tgtaaaaatg
     1381 atgaaacaat tagaatcaag tgagaagggc aaaaggagta aggagaagag caatttctga
     1441 gtaagagaaa ctcattgtga acagtatctt ggaacaaaag tgatttcttc tgatactgta
     1501 acggagcagt gggcagtgaa cattctccag ctgaggtata ggaaacaact tgggttgtac
     1561 caccaacaaa acaatactac aagagaccag aggacgacta taaacaggaa acccaaagcc
     1621 tatcagaaat gcctcaggaa tgcagacaac tgactctaga tgtcagtgtg gtaccaaaga
     1681 actgcagccc tagtgagctt gaaaggaggg tcggatacaa caagggcctc actatctcac
     1741 taaggtgacc tgagccaggc atgctggcac acacctttaa tcctaacact aaggaggcag
     1801 aggcaggtga atttctgagt tcaaggccag cctgatctat agatcgagtt ccaggacagc
     1861 cagggctgtt aacagaaaaa cactgtctca gaaaaaaagg gagtgggggc ttgacatgga
     1921 ttgttctttg aatataagta ccaacaagga cacactgctc actaacttga tcacaggtct
     1981 agtacagttg cttctaaaca ggtactaaat ataaatggca cacactctta aacatcacac
     2041 actgtgatac acacatacac acacacacac acacacacac acaggtttga aatttacata
     2101 cacaaaagga ataaaataat ggcatacaca gta
//
