LOCUS       NM_001357257            4400 bp    mRNA    linear   ROD 19-NOV-2024
DEFINITION  Mus musculus immunoglobulin superfamily, DCC subclass, member 3
            (Igdcc3), transcript variant 1, mRNA.
ACCESSION   NM_001357257 XM_006510873
VERSION     NM_001357257.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4400)
  AUTHORS   Lewandowski,J.P., Du,F., Zhang,S., Powell,M.B., Falkenstein,K.N.,
            Ji,H. and Vokes,S.A.
  TITLE     Spatiotemporal regulation of GLI target genes in the mammalian limb
            bud
  JOURNAL   Dev Biol 406 (1), 92-103 (2015)
   PUBMED   26238476
REFERENCE   2  (bases 1 to 4400)
  AUTHORS   Gu,Z., Imai,F., Kim,I.J., Fujita,H., Katayama,Ki., Mori,K.,
            Yoshihara,Y. and Yoshida,Y.
  TITLE     Expression of the immunoglobulin superfamily cell adhesion
            molecules in the developing spinal cord and dorsal root ganglion
  JOURNAL   PLoS One 10 (3), e0121550 (2015)
   PUBMED   25826454
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 4400)
  AUTHORS   Goggolidou,P., Soneji,S., Powles-Glover,N., Williams,D., Sethi,S.,
            Baban,D., Simon,M.M., Ragoussis,I. and Norris,D.P.
  TITLE     A chronological expression profile of gene activity during
            embryonic mouse brain development
  JOURNAL   Mamm Genome 24 (11-12), 459-472 (2013)
   PUBMED   24249052
REFERENCE   4  (bases 1 to 4400)
  AUTHORS   Shimogori,T., Lee,D.A., Miranda-Angulo,A., Yang,Y., Wang,H.,
            Jiang,L., Yoshida,A.C., Kataoka,A., Mashiko,H., Avetisyan,M.,
            Qi,L., Qian,J. and Blackshaw,S.
  TITLE     A genomic atlas of mouse hypothalamic development
  JOURNAL   Nat Neurosci 13 (6), 767-775 (2010)
   PUBMED   20436479
REFERENCE   5  (bases 1 to 4400)
  AUTHORS   Combes,A.N., Lesieur,E., Harley,V.R., Sinclair,A.H., Little,M.H.,
            Wilhelm,D. and Koopman,P.
  TITLE     Three-dimensional visualization of testis cord morphogenesis, a
            novel tubulogenic mechanism in development
  JOURNAL   Dev Dyn 238 (5), 1033-1041 (2009)
   PUBMED   19334288
REFERENCE   6  (bases 1 to 4400)
  AUTHORS   Fowles,L.F., Bennetts,J.S., Berkman,J.L., Williams,E., Koopman,P.,
            Teasdale,R.D. and Wicking,C.
  TITLE     Genomic screen for genes involved in mammalian craniofacial
            development
  JOURNAL   Genesis 35 (2), 73-87 (2003)
   PUBMED   12533789
REFERENCE   7  (bases 1 to 4400)
  AUTHORS   Yang,W., Li,C. and Mansour,S.L.
  TITLE     Impaired motor coordination in mice that lack punc
  JOURNAL   Mol Cell Biol 21 (17), 6031-6043 (2001)
   PUBMED   11486040
REFERENCE   8  (bases 1 to 4400)
  AUTHORS   Salbaum,J.M. and Kappen,C.
  TITLE     Cloning and expression of nope, a new mouse gene of the
            immunoglobulin superfamily related to guidance receptors
  JOURNAL   Genomics 64 (1), 15-23 (2000)
   PUBMED   10708514
REFERENCE   9  (bases 1 to 4400)
  AUTHORS   Salbaum,J.M.
  TITLE     Genomic structure and chromosomal localization of the mouse gene
            Punc
  JOURNAL   Mamm Genome 10 (2), 107-111 (1999)
   PUBMED   9922388
REFERENCE   10 (bases 1 to 4400)
  AUTHORS   Salbaum,J.M.
  TITLE     Punc, a novel mouse gene of the immunoglobulin superfamily, is
            expressed predominantly in the developing nervous system
  JOURNAL   Mech Dev 71 (1-2), 201-204 (1998)
   PUBMED   9507132
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK011916.1, AK051027.1 and AC110235.13.
            
            On Oct 24, 2017 this sequence version replaced XM_006510873.2.
            
            Transcript Variant: This variant (1) represents the longer
            transcript and encodes the longer isoform (1).
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK011916.1, BC053057.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849379
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-35                AK011916.1         2-36
            36-2937             AK051027.1         2-2903
            2938-4400           AC110235.13        69045-70507
FEATURES             Location/Qualifiers
     source          1..4400
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="9"
                     /map="9 35.13 cM"
     gene            1..4400
                     /gene="Igdcc3"
                     /gene_synonym="2810401C09Rik; Punc; WI-14920"
                     /note="immunoglobulin superfamily, DCC subclass, member 3"
                     /db_xref="GeneID:19289"
                     /db_xref="MGI:MGI:1202390"
     exon            1..400
                     /gene="Igdcc3"
                     /gene_synonym="2810401C09Rik; Punc; WI-14920"
                     /inference="alignment:Splign:2.1.0"
     CDS             262..2703
                     /gene="Igdcc3"
                     /gene_synonym="2810401C09Rik; Punc; WI-14920"
                     /note="isoform 1 precursor is encoded by transcript
                     variant 1; putative neuronal cell adhesion molecule;
                     amplimer WI-14920, mouse homolog"
                     /codon_start=1
                     /product="immunoglobulin superfamily DCC subclass member 3
                     isoform 1 precursor"
                     /protein_id="NP_001344186.1"
                     /db_xref="CCDS:CCDS90599.1"
                     /db_xref="GeneID:19289"
                     /db_xref="MGI:MGI:1202390"
                     /translation="MAEPRTASPRRLPALRRPGFLPPLLPPPPPPLLLLLLLLPLPAP
                     SLGLGHSAELAFSVEPNDDIANPGQPIVLGCKVEGTPPVQVSWRKNGAELPEGTHTTL
                     LANGSLLIHHFRLEQGGSPSDEGDYECVAQNRFGLLVSRKARLQAATMSDFHVHPQAV
                     TGEEGGVARFQCQIHGLPKPLITWEKNRVPIDTDDERYTLLPKGVLQITGLRAEDSGI
                     FHCVASNIASVRVSHGARLTVSGSGSGTYKEPTILVGPENLTLTVHQTAVLECVATGN
                     PRPIVSWSRLDGRPIGVEGIQVLGTGNLIISDVTVQHSGVYVCAANRPGTRVRRTAQG
                     RLVVQAPAEFVQHPQSISRPAGTTAMFTCQAQGEPPPHVTWLKNGQVLGAGGHVRLKN
                     NNSTLSISGVGPEDEAIYQCVAENIAGSSQASARLTVLWAEGLPGPPRNVRAVSVSST
                     EVRVSWSEPLAHTKEIIGYVLHIRKAADSPKLEYQEAVSKSTFQHLVRDLEPSTAYSF
                     YIKAYTPRGASLASVPTLASTLGEAPVPPPLSVRLLGSSSLQLLWKPWPRLAQHNGGF
                     KLFYRPVSATSFTGPILLPGTVSSYNLSQLDPSTVYEVKLLAYNQHGDGNATVRFVSL
                     KGASERTALTPPCDCRKEDVTNHTSTTGIVIGIHIGVTCIIFCVLFLLFGQRGRVLLC
                     KDVENQLSPPQGPRSQRDPGILALNGLSRGEGGQLSRDEKPVDAKELEQLFPTAGSAA
                     QPGSTPTDPAAPAPCEETQLSMVQLQGFNLVAGRTTEATSPCAGPGPVPAPQDIGPVP
                     LSEGQTQPPAVAAPQ"
     exon            401..706
                     /gene="Igdcc3"
                     /gene_synonym="2810401C09Rik; Punc; WI-14920"
                     /inference="alignment:Splign:2.1.0"
     exon            707..851
                     /gene="Igdcc3"
                     /gene_synonym="2810401C09Rik; Punc; WI-14920"
                     /inference="alignment:Splign:2.1.0"
     exon            852..982
                     /gene="Igdcc3"
                     /gene_synonym="2810401C09Rik; Punc; WI-14920"
                     /inference="alignment:Splign:2.1.0"
     exon            983..1120
                     /gene="Igdcc3"
                     /gene_synonym="2810401C09Rik; Punc; WI-14920"
                     /inference="alignment:Splign:2.1.0"
     exon            1121..1279
                     /gene="Igdcc3"
                     /gene_synonym="2810401C09Rik; Punc; WI-14920"
                     /inference="alignment:Splign:2.1.0"
     exon            1280..1445
                     /gene="Igdcc3"
                     /gene_synonym="2810401C09Rik; Punc; WI-14920"
                     /inference="alignment:Splign:2.1.0"
     exon            1446..1693
                     /gene="Igdcc3"
                     /gene_synonym="2810401C09Rik; Punc; WI-14920"
                     /inference="alignment:Splign:2.1.0"
     exon            1694..1858
                     /gene="Igdcc3"
                     /gene_synonym="2810401C09Rik; Punc; WI-14920"
                     /inference="alignment:Splign:2.1.0"
     exon            1859..2050
                     /gene="Igdcc3"
                     /gene_synonym="2810401C09Rik; Punc; WI-14920"
                     /inference="alignment:Splign:2.1.0"
     exon            2051..2155
                     /gene="Igdcc3"
                     /gene_synonym="2810401C09Rik; Punc; WI-14920"
                     /inference="alignment:Splign:2.1.0"
     exon            2156..2294
                     /gene="Igdcc3"
                     /gene_synonym="2810401C09Rik; Punc; WI-14920"
                     /inference="alignment:Splign:2.1.0"
     exon            2295..2502
                     /gene="Igdcc3"
                     /gene_synonym="2810401C09Rik; Punc; WI-14920"
                     /inference="alignment:Splign:2.1.0"
     exon            2503..4400
                     /gene="Igdcc3"
                     /gene_synonym="2810401C09Rik; Punc; WI-14920"
                     /inference="alignment:Splign:2.1.0"
     regulatory      4375..4380
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Igdcc3"
                     /gene_synonym="2810401C09Rik; Punc; WI-14920"
                     /note="hexamer: AATAAA"
     polyA_site      4400
                     /gene="Igdcc3"
                     /gene_synonym="2810401C09Rik; Punc; WI-14920"
                     /note="major polyA site"
ORIGIN      
        1 ggagtgcgga gcgcgcaccc cgggcgcggc tgacagatcg ccgcggtggg tgcaagatgg
       61 cgcaagcggc gctctccgtg atacccgatc cccgctaagg ccggcatgcg gccccagcct
      121 cccgccgccc gggctcggcc ccggcccgag ccccggcccc ggctccggcg ccggccccgc
      181 gggacgctgt gagcccgtga gaccccaacc acccccctga gtagcgccgt gcgtcgccga
      241 gcccagcgga ccgagagacc gatggctgag ccgcgcaccg cgtccccgcg ccgcctgccc
      301 gcgctgcgcc ggcccgggtt tctgccgccg ttgctgccgc cgccgccgcc gccgctgctg
      361 ttgctgctgc tgctgttgcc gctgcctgcg ccaagcctgg gtctgggcca ttctgctgaa
      421 ctggcatttt ctgtggagcc aaatgatgat attgccaacc ctgggcagcc catagtgctg
      481 ggctgcaaag tggagggcac ccctccagtg caagtctcct ggaggaagaa tggagcagag
      541 ctaccagagg gcacccacac cactctgctg gccaatggct ccttgctgat ccaccacttc
      601 aggctggagc aaggaggtag cccttcagat gagggtgact atgaatgtgt ggctcagaac
      661 cgctttgggc tgctggtcag tcggaaggct cgtctccagg ctgcaactat gtccgacttc
      721 cacgtacacc cccaggccgt cacgggtgag gagggtggtg tggcccgctt ccagtgccaa
      781 atccatgggc ttcccaagcc cctgatcaca tgggagaaga acagagttcc cattgacacg
      841 gacgatgaga ggtacacact actgcccaag ggagtcctgc agataacagg acttcgggct
      901 gaggacagcg gcatcttcca ctgtgtggcc tcaaacattg ctagtgtgcg ggtcagccac
      961 ggggccaggc tcactgtgtc aggctcgggc tcagggacct acaaggagcc caccattctt
     1021 gtggggcctg agaacctcac cctgacagtg caccagactg cggtgctgga gtgtgtcgcc
     1081 acgggcaacc cgcgccccat tgtgtcctgg agccgcttgg atggccgccc cattggggtg
     1141 gagggcatcc aggtgctggg cacaggaaac cttatcatct cagatgtgac tgtccagcat
     1201 tcaggtgtct atgtctgtgc agccaacagg cctggcaccc gggtgagaag gacggcccag
     1261 ggtcggctgg tggtacaagc tccagcagag tttgttcagc atccccagtc catctccagg
     1321 cctgctggga ccacagccat gttcacctgc caagcgcagg gggagccacc gcctcatgtc
     1381 acatggttga agaatggaca agtgctgggg gcaggaggcc atgtcaggct caagaacaat
     1441 aacagcacac tgagcatttc tggagtcgga cctgaagatg aggccatcta ccaatgtgtg
     1501 gctgagaaca ttgctggctc gtcgcaagcc agcgccaggc tgaccgtgct gtgggctgag
     1561 gggttgccag gccccccacg caatgtccga gctgtctctg tgtcctccac tgaagttcga
     1621 gtgtcctgga gtgagcctct ggcccacacc aaagagatca ttggctatgt cttgcacatc
     1681 aggaaggctg ccgactcacc caagctagag taccaggaag ctgtcagcaa gagcaccttt
     1741 cagcacctgg tgagagacct tgagccctcc actgcctaca gcttctacat caaagcctac
     1801 acaccacgag gggccagttt agcctctgtc cccaccctgg ccagcaccct gggtgaagcc
     1861 cctgtcccac ccccattatc tgtgcggttg ctgggcagct cctctctaca actgctatgg
     1921 aagccctggc cacggctggc ccaacacaat ggaggcttca agctgtttta ccgcccagtc
     1981 agtgcaacct ccttcactgg ccccatcttg ctccctggga ctgtctcctc ttacaacctc
     2041 agccagcttg accccagcac cgtgtacgag gtgaagctcc tggcctacaa ccagcatgga
     2101 gatggaaacg ccacggtccg atttgtgtct ctgaagggag cctctgagag gacagccctg
     2161 actcccccat gtgactgccg gaaggaagat gtcaccaacc atacgtccac tacaggcatt
     2221 gttatcggca tccacatcgg agtcacctgc atcatcttct gcgtcctctt tcttctgttt
     2281 ggccagaggg gcagggtcct cctgtgtaag gatgtggaaa accagctctc ccctccccag
     2341 ggtccccgga gccagaggga ccctggtatc ctggccctga atggactgag ccgaggagaa
     2401 gggggccagc tgagccgaga tgaaaagccg gtggacgcca aggagttgga acagctgttt
     2461 cccacagctg ggtcagctgc acagccaggc tccacaccca cggatcctgc agcccctgct
     2521 ccatgtgagg agacccagct ctccatggtt cagcttcaag gcttcaacct tgtggcaggg
     2581 aggacaacag aggccacgtc cccctgtgca gggcctgggc ctgtcccagc accccaggat
     2641 ataggccctg tccccctcag tgaaggacag acccagcctc cagcagtcgc agcaccccag
     2701 tgagctcact gtgttcccga ggggcggtac cccattctca ggtcaaaggc gaggtttttc
     2761 ctgttctgtg ggatttggcg ctcgccagtg aaggacaggg ttctcaaacc acaggaacca
     2821 gtgggtccta caagcaaggc atctccctgc tcgagccaat gtcccctcac caatgcctgc
     2881 tgcccatagg acttaggaaa caaacgtttt cctttaaaaa aaaatcaaaa tttaaaagtc
     2941 aaaaaaggaa gatgaaagaa gagagagaga gagaagaagt gaattatact ccaaaaatat
     3001 gtccctgctg tggcccggcc cctgacgctg tcaccctgct cggaccttgt tttctcagga
     3061 tggattttga gctgttgtga ctctcagcac ctacctcagc cggaatgaat gtccttgggg
     3121 gtagtggggc agtagcctcc gcctctaccc cacagagccc gaaagcactc ctacctcaag
     3181 ccccttaatg ggggcccctc ccacctatat tgctgcccag agtaacagaa aaaggagaaa
     3241 aaaagaaaaa aaagaaaaaa aaccagaaaa ttaaaaaaaa aaaacctaac ccccaaaaga
     3301 accactgtcc caactccaag tgtgaaagaa actgtctacc tcagggctca cggccctcag
     3361 tgtgggcctg tgctgtcact ggaccctccc ccagcctcct tcatccctgg cctagcctac
     3421 ctctccccca cagaggaggc tgtagctagg tgaccatggg ggcttacaga aatagagatg
     3481 aaactggtca gaaagaaaat gtgaaacaag ccaaaaacaa gaggaaagct gttccttaaa
     3541 gtataaatca tcccaaacta gtcgcatccc tgcctgccac ctgaactccg gctcctgtgt
     3601 ctgtccgccc ttgttctgac cttctcagac aacccactgg ccacctgcat ccctatcgtc
     3661 ctccctgcct gggtttaggg aaggtgggac ataacctgtc tcctgttctc ccagacacag
     3721 ggcccagtct ctggaatgta ttgcattgtg tggaggtggg tgctctccca tagaggcaca
     3781 ccagctttct gggacccagg taacctgacc tgcccagtca gcaggggtgg ccaagagtta
     3841 tttttttatg aggtgtgttt acgttttatt tctcttttct gttgtattgt tctttgaact
     3901 acttaggtta aaaagtaaga aacagaaagg aaaaaaaaaa ccacaaatac ctatttttgg
     3961 ttacactcag aaacattttt ttaaatagca gaagaaaaac tttttttaaa gaaaaaaaaa
     4021 aaaggttaag tgtattcttt aaaaaatgag gttagaacat aaagtccctg accccaaatc
     4081 ctctagggat tcccaccctg aactctagag aattagctaa aaggtagaat ttgtggcgtt
     4141 tcattagaaa cccagactct tgtccaagtg gacttgggaa gggcagtctg tcccttctct
     4201 caaatggtag gtggattcta gggctcttcc cactctgagc cagtgtcctc tgtccccaag
     4261 ttgcttctct gtggcatccc atttttcttt ggtcagagag gctaggggag agggggctgg
     4321 cagcctcttt ggcctgactt ggttgggttt gtcacagtgg attcatttta actgaataaa
     4381 agtactgttg ccaaagtgaa
//
