LOCUS       XM_017319702            4048 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus intraflagellar transport 80 (Ift80),
            transcript variant X2, mRNA.
ACCESSION   XM_017319702
VERSION     XM_017319702.3
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000069.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_017319702.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4048
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="3"
     gene            1..4048
                     /gene="Ift80"
                     /gene_synonym="4921524P20Rik; mKIAA1374; Wdr56"
                     /note="intraflagellar transport 80; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 5
                     mRNAs, 26 ESTs, 382 long SRA reads, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 16 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:68259"
                     /db_xref="MGI:MGI:1915509"
     CDS             221..2479
                     /gene="Ift80"
                     /gene_synonym="4921524P20Rik; mKIAA1374; Wdr56"
                     /codon_start=1
                     /product="intraflagellar transport protein 80 homolog
                     isoform X2"
                     /protein_id="XP_017175191.1"
                     /db_xref="GeneID:68259"
                     /db_xref="MGI:MGI:1915509"
                     /translation="MRLKISLSKEPKHQELVSCVGWTTAEELYSCSDDHQIVKWNLLT
                     SETSLIVKLPDDIYPIDLHWFPKSLGIKKQTQAESFVLTSSDGKFHLISKLGRVEKSV
                     EAHCGAVLAGRWNYEGTALVTVGEDGQVKIWSKTGMLRSTLAQQGTPVYSVAWGPDSE
                     KVLYTAGKQLIIKPLQPNAKVLQWKAHDGIILKVDWNSVNDLILSAGEDCKYKVWDSY
                     GRVLYGSQPHEHPITSVAWAPDGELFAVGSFHTLRLCDKTGWSYALEKPNTGSIFNIA
                     WSIDGTQIAGACGNGHVVFAHVVEQRWEWKNFQVTLTKRRTMQVRNVLNDAVDLLEFR
                     DRVIKASLNHAHLVVSTSLQCYVFSHFLLVDGGGIYLHSYEGRFISSPKFPGMRTDIL
                     NAQTVSLSNDTIAIKDKADEKIIFLFEASTGKPLGDGKLLSHKNEISEIALDQKGLTN
                     DRKIAFIDKNRDLYITSVKRFGKEEQIIKLGTMVHTLAWCDTCNILCGIQDTRFTVWY
                     YPNTIYVDRDILPKTLYERDASEYSKNPHIVSFVGNQVTIRRADGSLVHISISPYPAI
                     LHEYVSSSKWEEAVRLCRFVKEQSMWACLAAMAVANRDMVTAEIAYAAVGEIDKVRYI
                     NAIKDLPSRESKMAHILMFSGNIQEAETVLLQAGLVYQAIQININLYNWERALELAVK
                     YKTHVDTVLAYRQKFLDTFGKQETNKRYLQYAEGLQIDWEKIKAKIEMEITKERDRSS
                     SGQSSKSVGLKH"
ORIGIN      
        1 gggcggggtc aagagcccgc tcgggtgact ggcacctagc aagtatcgcg ggaacatggc
       61 agggggaaac gctcgcagcg cttagaaatc actatggtga cggaaaggtc gggaggctat
      121 ttggtaacta gttcgagctc tgagagcagt cgccaccgct ttcctggaac ttgagtgaat
      181 acaatcaagc ggtatttaac atttctctgg aactggagac atgagactga agatatctct
      241 ctcaaaggaa ccaaagcatc aagaattagt gagctgtgtg ggttggacta cggcggagga
      301 gctgtactca tgcagtgacg accaccagat cgtcaagtgg aacctgctaa ccagtgaaac
      361 cagcctaata gtcaagctgc ctgatgacat ctacccgata gaccttcact ggtttccaaa
      421 gagtttaggc ataaagaaac agacgcaggc agaaagcttc gtcctcacaa gctctgatgg
      481 taagtttcat ctgatttcca agttaggaag agtggaaaag agtgtagaag ctcactgtgg
      541 ggctgtgctc gcaggacgat ggaattatga ggggactgca ttagtgacag ttggagaaga
      601 tggacaagtg aaaatctggt caaagacagg gatgctcaga tcaactttag cccagcaagg
      661 aacaccagtg tactcagtag cctggggccc tgattcagaa aaggttcttt atacagcagg
      721 caaacagctc atcattaaac ctcttcaacc aaatgctaaa gttttacagt ggaaagccca
      781 tgatggcatc attttaaaag tcgactggaa ctcagtgaat gaccttattt tatctgcggg
      841 tgaagactgt aagtataagg tttgggatag ttatggccgc gtgctgtacg gctcccagcc
      901 tcatgagcac cccatcacct cagtggcctg ggctccagat ggggagttat ttgccgttgg
      961 atcgtttcat acgttacgct tgtgtgataa aactgggtgg tcatatgctt tagagaaacc
     1021 caacactggc agcatattta acattgcgtg gtctattgat ggcactcaga tcgcgggagc
     1081 ctgtgggaac gggcatgttg tctttgcaca tgtggtggag cagcgctggg agtggaaaaa
     1141 ttttcaagta acgctaacga agagaaggac catgcaggtt cgcaacgttc tcaatgatgc
     1201 cgtggatctc ctggagttcc gggacagagt cattaaagca tccttaaacc acgcacactt
     1261 ggtggtctcc acgtccctgc agtgctacgt gttctcacat tttcttctgg tggatggcgg
     1321 gggtatctac ctgcactctt atgaagggcg cttcatttct tctccaaagt ttcctggcat
     1381 gagaacagac atcctgaacg ctcagactgt gtctctgagc aatgacacga tagcaataaa
     1441 ggacaaagct gacgagaaga taatcttcct ctttgaggcg tcaactggaa aacccctagg
     1501 ggatgggaaa cttctttctc ataagaatga aatctcagaa attgctctgg atcaaaaagg
     1561 acttaccaat gacagaaaaa ttgctttcat tgacaagaac agagatctct acatcacctc
     1621 tgtgaaacga tttgggaaag aagaacagat tattaaactt ggaaccatgg tacatacttt
     1681 ggcatggtgt gatacatgca atatcctctg tggaattcaa gatactcgat tcacagtatg
     1741 gtattaccct aataccattt atgtggacag agacattctg cctaaaacat tgtacgaaag
     1801 agatgcaagt gaatatagta aaaacccgca tatagtgagt tttgttggaa atcaggtaac
     1861 tataagaaga gctgatggct ccctggtgca catcagcata tcaccgtacc ccgccatcct
     1921 ccatgagtat gtgagcagct ccaagtggga agaggctgta aggctttgcc gctttgttaa
     1981 ggagcaaagc atgtgggctt gcctagcggc tatggctgtt gctaatcgag atatggtcac
     2041 tgcagaaata gcctatgcag cagttgggga aattgataaa gttcggtaca tcaatgctat
     2101 aaaagatctt ccatctagag agtcaaaaat ggcccacata ctcatgttta gtgggaacat
     2161 ccaggaggct gaaacagtcc tgctccaggc tggccttgtt tatcaagcca tacagatcaa
     2221 cattaatctc tataactggg aaagggcgct ggagttggct gtaaaataca aaacccacgt
     2281 tgatacagtg ctcgcttatc gtcagaagtt cttggacaca tttggtaaac aggaaactaa
     2341 taaacgatat ttacaatatg cagagggcct ccaaatagac tgggagaaaa tcaaagccaa
     2401 aattgagatg gaaattacta aagaacgaga ccgatcatcc agcggccagt ccagcaagag
     2461 tgtgggctta aagcactaag ggccacgctt acctccaaac tagtttggac taaccaaaga
     2521 tgtgcatgtt tgtttgcttt aagaagaaaa aaaagcataa ttttaagact agtgcttcct
     2581 ctagatggta gtgcacttgc ctagcataca tgaggccctg gggctcatcc ccagtcaaaa
     2641 gaaaaaggca ttgtctttga ataagtgtat gagttttctg tgtttttaat acttaaggta
     2701 cgttcagaaa ggttaagccc aaaatacctt atataattcc atcatttcta tttttctagt
     2761 ctaataatta agaaaatatt tctatatgct tatctatgcc caaggagtgt tgagtacatt
     2821 ccagtttgtt tgtttgtttg ttcctttatt tctgtttttt tcagtataaa taggtattct
     2881 tataataaag ccttgagtta tttacaatgt atgttattct gattgtatgt attctatttg
     2941 atatataaat tgtaaagtat cttccatact ttatgaaaca aaaatacagg agaaagggtt
     3001 tggggaaaat ggtacaatgt agatgtatat cgaagtttat agttcacata acaaacgctg
     3061 ggaacagcta tggtatccat cagctacaat tagataaaac cacgtggtat tcaccggcag
     3121 tgattagtct ctcatagaag ggttgagctg tggcacatgc cgcaacgtgg atgagcctag
     3181 gagaacttcc actacgtgaa gtaggttaga catggcacag acgtcagtcc tgcggggctc
     3241 acacaaggca ctcggattaa gtaagttctt ctggtcagaa aagaggcaag agggacaggc
     3301 cctggaggag ggaattcatt gtgtaacgct ggccattgct gcttggggtg agagccctag
     3361 aaatggagag tggtgatggt tgtatagcat cgtgggtgtt gtgaactccg ttgtcctctt
     3421 taaaaggatt aaaatgataa attttctttc cagttgtttt tttttttaaa ccatattgaa
     3481 aaagtagtca aactgctttt gttgttgttg ttactctatt gacaaagttg gtaaactgca
     3541 ttttcttcat tcttccctga cttcagaata tttgggcctc agacttagag tctaaatttt
     3601 caaaactctc ctcactggat gaccctgttt gtctggcttt aatataatgc atccccaagt
     3661 ccccaaaagc tttttaacag tgacacagac atccctctaa agtgcccttg accctgctct
     3721 tagaattggt gcattacaga gctcatgcac actaattggg aaaaacatca cccctttccc
     3781 tccactgtaa tttctcatgt aggttttgtt catagaaatg ccccatagtt cccaatatgt
     3841 accttttctt ttatgaaatg ttggactgtt caattcttag tctagagttt ggatacacag
     3901 atatgttcaa ttcatgaaat ctaagcaatt gacttatatg ttatacatgc tttctacttt
     3961 gttaaatttc agtgtaatgt ttcaaaagaa aaaaatggtt aaattttatg tttagtatgt
     4021 ttaccacaat aaaaaggtta aaaaaaaa
//
