LOCUS       NM_001081228            2008 bp    mRNA    linear   ROD 10-FEB-2025
DEFINITION  Mus musculus intraflagellar transport 70A2 (Ift70a2), mRNA.
ACCESSION   NM_001081228 XM_485011
VERSION     NM_001081228.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2008)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 2008)
  AUTHORS   Dickinson,M.E., Flenniken,A.M., Ji,X., Teboul,L., Wong,M.D.,
            White,J.K., Meehan,T.F., Weninger,W.J., Westerberg,H., Adissu,H.,
            Baker,C.N., Bower,L., Brown,J.M., Caddle,L.B., Chiani,F., Clary,D.,
            Cleak,J., Daly,M.J., Denegre,J.M., Doe,B., Dolan,M.E., Edie,S.M.,
            Fuchs,H., Gailus-Durner,V., Galli,A., Gambadoro,A., Gallegos,J.,
            Guo,S., Horner,N.R., Hsu,C.W., Johnson,S.J., Kalaga,S., Keith,L.C.,
            Lanoue,L., Lawson,T.N., Lek,M., Mark,M., Marschall,S., Mason,J.,
            McElwee,M.L., Newbigging,S., Nutter,L.M., Peterson,K.A.,
            Ramirez-Solis,R., Rowland,D.J., Ryder,E., Samocha,K.E.,
            Seavitt,J.R., Selloum,M., Szoke-Kovacs,Z., Tamura,M., Trainor,A.G.,
            Tudose,I., Wakana,S., Warren,J., Wendling,O., West,D.B., Wong,L.,
            Yoshiki,A., MacArthur,D.G., Tocchini-Valentini,G.P., Gao,X.,
            Flicek,P., Bradley,A., Skarnes,W.C., Justice,M.J., Parkinson,H.E.,
            Moore,M., Wells,S., Braun,R.E., Svenson,K.L., de Angelis,M.H.,
            Herault,Y., Mohun,T., Mallon,A.M., Henkelman,R.M., Brown,S.D.,
            Adams,D.J., Lloyd,K.C., McKerlie,C., Beaudet,A.L., Bucan,M. and
            Murray,S.A.
  CONSRTM   International Mouse Phenotyping Consortium; Jackson Laboratory;
            Infrastructure Nationale PHENOMIN, Institut Clinique de la Souris
            (ICS); Charles River Laboratories; MRC Harwell; Toronto Centre for
            Phenogenomics; Wellcome Trust Sanger Institute; RIKEN BioResource
            Center
  TITLE     High-throughput discovery of novel developmental phenotypes
  JOURNAL   Nature 537 (7621), 508-514 (2016)
   PUBMED   27626380
  REMARK    Erratum:[Nature. 2017 Nov 16;551(7680):398. doi:
            10.1038/nature24643.. PMID: 29144450]
REFERENCE   3  (bases 1 to 2008)
  AUTHORS   Koscielny,G., Yaikhom,G., Iyer,V., Meehan,T.F., Morgan,H.,
            Atienza-Herrero,J., Blake,A., Chen,C.K., Easty,R., Di Fenza,A.,
            Fiegel,T., Grifiths,M., Horne,A., Karp,N.A., Kurbatova,N.,
            Mason,J.C., Matthews,P., Oakley,D.J., Qazi,A., Regnart,J.,
            Retha,A., Santos,L.A., Sneddon,D.J., Warren,J., Westerberg,H.,
            Wilson,R.J., Melvin,D.G., Smedley,D., Brown,S.D., Flicek,P.,
            Skarnes,W.C., Mallon,A.M. and Parkinson,H.
  TITLE     The International Mouse Phenotyping Consortium Web Portal, a
            unified point of access for knockout mice and related phenotyping
            data
  JOURNAL   Nucleic Acids Res 42 (Database issue), D802-D809 (2014)
   PUBMED   24194600
REFERENCE   4  (bases 1 to 2008)
  AUTHORS   Howard,P.W., Jue,S.F. and Maurer,R.A.
  TITLE     Interaction of mouse TTC30/DYF-1 with multiple intraflagellar
            transport complex B proteins and KIF17
  JOURNAL   Exp Cell Res 319 (14), 2275-2281 (2013)
   PUBMED   23810713
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AL772341.12.
            
            On Feb 6, 2007 this sequence version replaced XM_485011.4.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript is intronless :: BC157934.1 [ECO:0000345]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-2008              AL772341.12        33932-35939         c
FEATURES             Location/Qualifiers
     source          1..2008
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10090"
                     /chromosome="2"
                     /map="2 44.8 cM"
     gene            1..2008
                     /gene="Ift70a2"
                     /gene_synonym="Ttc30a2"
                     /note="intraflagellar transport 70A2"
                     /db_xref="GeneID:620631"
                     /db_xref="MGI:MGI:3700200"
     exon            1..2008
                     /gene="Ift70a2"
                     /gene_synonym="Ttc30a2"
                     /inference="alignment:Splign:2.1.0"
     CDS             14..2008
                     /gene="Ift70a2"
                     /gene_synonym="Ttc30a2"
                     /note="tetratricopeptide repeat protein 30A2; novel
                     tetratrico peptide repeat (TPR) containing protein; TPR
                     repeat protein 30A2; tetratricopeptide repeat domain 30A2"
                     /codon_start=1
                     /product="intraflagellar transport protein 70A2"
                     /protein_id="NP_001074697.1"
                     /db_xref="CCDS:CCDS38151.1"
                     /db_xref="GeneID:620631"
                     /db_xref="MGI:MGI:3700200"
                     /translation="MAGLSNSQIPDGEFTAVVYRLIRDSRYSEAVQLLSAELQRSSRS
                     RAGLSLLAYCYYRLQEFELAAECYEQLSQMHPELEQYRLYQAQALYKACLYPEATRVA
                     FLLDNPTFYSRVLRLQAAIKYSEGDLPGARSLVEQLLSGEAGEDSGGENDPDGLVNMG
                     CLLYKEGHYEAACSKFFAALQASGYQPDVSYNLALACYSNRHYAPALKHIANIIERGI
                     RQHPELGVGMTTEGIDVRSVGNTVVLHQTALVEAFNLKAAIEYQLRNYEAAQEALTDM
                     PPRAEEELDPVTLHNQALMNMDAKPTEGFEKLQFLLQQNPFPPETFGNLLLLYCKYEY
                     FDLAADVLAENAHLTYKFLTPYLYDFLDAMITCQTAPEEAFIKLDGLAGMLTEQLRRL
                     TKQVQEARHNRDDEVVIKAVNEYDETLEKYIPVLMAQAKIYWNLENYPMVEKIFRKSV
                     EFCNDHDVWKLNVAHVLFMQENKYKEAIGFYEPIVKKNYDNILSVSAIVLANLCVSYI
                     MTSQNEEAEELMRKIEKEEEQLSYGDPDKKIYHLCIVNLVIGTLYCAKGNYDFGISRV
                     IKSLEPYHKKLGTDTWYYAKRCFLSLLENMSKHTIMLRDSVIQECVQFLEHCEIFGRN
                     IPAVIEQPLEEERMHIGKNTVTYESRQLKALIYEIIGWNM"
ORIGIN      
        1 aatcttgaca gttatggcag ggctgagcaa ctcccagatc cccgacggtg agttcacagc
       61 agtggtgtac aggctcatcc gcgactcccg ctactcagag gcggtgcaac tgctgagcgc
      121 agagctgcag aggagctccc gcagccgcgc agggctgtcg ctgctggcct actgctacta
      181 ccgcctgcag gagttcgagc tcgctgcaga gtgctatgag cagctgagcc agatgcaccc
      241 ggaactcgag cagtaccgcc tgtaccaggc ccaggcgctg tacaaggcct gcctgtatcc
      301 agaggccacc agggtcgcct tcctcctgga caaccccacc ttctatagcc gagtccttcg
      361 tttacaagct gctatcaagt acagtgaagg tgacctccca ggagccagga gcctggtgga
      421 gcagctgctg agtggggaag ctggagaaga cagtggaggg gagaatgacc cagatggttt
      481 ggtcaacatg ggttgtctgc tctacaagga gggacactat gaagctgcct gctccaaatt
      541 ctttgcggct ttgcaggctt ctggctacca gcccgatgta tcttacaacc tagctttagc
      601 ttgttacagc aacaggcact atgccccagc actgaagcat attgccaata tcattgagcg
      661 tggcatccgt caacacccag aactcggtgt gggcatgacc acggagggca ttgatgttcg
      721 cagtgttggc aacactgtag tccttcacca gactgctctg gtcgaagcct tcaacctcaa
      781 ggcagccata gagtaccagc tgagaaacta cgaggcagcc caggaagccc tcactgacat
      841 gccacccaga gcagaggaag agctggaccc cgtaaccctc cacaaccagg ctctgatgaa
      901 catggatgcc aagcccacag agggctttga aaagctccag tttctgctcc agcagaaccc
      961 ctttccccca gagacctttg gcaacctgct gctgctctac tgtaaatatg agtattttga
     1021 cctggcagct gatgtcctgg cagaaaatgc ccacttgact tacaagttcc tcacacccta
     1081 tctctatgac ttcttggatg ccatgatcac ttgccagaca gctcctgaag aggctttcat
     1141 taaacttgat gggttggctg gcatgctgac tgagcagctc aggagactca ctaagcaagt
     1201 tcaagaagca aggcataaca gagatgatga agttgtcata aaggctgtga atgaatatga
     1261 tgaaactctt gagaaatata ttcctgtact gatggcccag gcaaaaatct actggaatct
     1321 tgagaattac ccaatggtag agaagatctt ccgcaaatct gtggaattct gtaatgacca
     1381 tgatgtgtgg aagctgaatg tggcccatgt cctcttcatg caggagaaca agtacaaaga
     1441 ggccattggt ttctatgagc ccattgtcaa gaagaattat gataacatcc tgagtgtcag
     1501 tgctattgtg ttagccaacc tctgtgtttc ctatatcatg acaagtcaaa acgaggaagc
     1561 tgaggagctc atgaggaaga ttgagaagga ggaggaacaa ctctcttatg gtgacccaga
     1621 caagaaaatc taccaccttt gcattgtgaa tttggtgata ggaaccctgt attgtgccaa
     1681 aggaaactat gactttggca tctctcgagt tatcaaaagc ctggagcctt accataaaaa
     1741 gctaggcacc gatacgtggt attatgccaa gagatgcttc ctgtccttac tagagaacat
     1801 gtcaaagcac acaattatgc taagggacag tgtcattcaa gaatgtgtcc agtttctaga
     1861 gcactgtgaa atttttggca gaaacatccc tgctgtcata gaacagccct tggaggaaga
     1921 aagaatgcac attggaaaaa atacagtcac atatgagtcc agacagttga aagctttgat
     1981 ttatgagatc atagggtgga atatgtag
//
