LOCUS       NM_030188               2862 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Mus musculus intraflagellar transport 70A1 (Ift70a1), mRNA.
ACCESSION   NM_030188
VERSION     NM_030188.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2862)
  AUTHORS   Howard,P.W., Jue,S.F. and Maurer,R.A.
  TITLE     Interaction of mouse TTC30/DYF-1 with multiple intraflagellar
            transport complex B proteins and KIF17
  JOURNAL   Exp Cell Res 319 (14), 2275-2281 (2013)
   PUBMED   23810713
REFERENCE   2  (bases 1 to 2862)
  AUTHORS   Follit,J.A., Xu,F., Keady,B.T. and Pazour,G.J.
  TITLE     Characterization of mouse IFT complex B
  JOURNAL   Cell Motil Cytoskeleton 66 (8), 457-468 (2009)
   PUBMED   19253336
REFERENCE   3  (bases 1 to 2862)
  AUTHORS   McClintock,T.S., Glasser,C.E., Bose,S.C. and Bergman,D.A.
  TITLE     Tissue expression patterns identify mouse cilia genes
  JOURNAL   Physiol Genomics 32 (2), 198-206 (2008)
   PUBMED   17971504
  REMARK    GeneRIF: Ttc30a1 is most abundantly expressed in tissues rich in
            highly ciliated cells, such as olfactory sensory neurons, and is
            predicted to be important to cilia.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BU610816.1 and AK045096.1.
            
            On Feb 16, 2007 this sequence version replaced NM_030188.2.
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-201               BU610816.1         1-201
            202-2862            AK045096.1         2-2662
FEATURES             Location/Qualifiers
     source          1..2862
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="2"
                     /map="2 44.8 cM"
     gene            1..2862
                     /gene="Ift70a1"
                     /gene_synonym="4930506L13Rik; Ttc30a1"
                     /note="intraflagellar transport 70A1"
                     /db_xref="GeneID:78802"
                     /db_xref="MGI:MGI:1926052"
     exon            1..2862
                     /gene="Ift70a1"
                     /gene_synonym="4930506L13Rik; Ttc30a1"
                     /inference="alignment:Splign:2.1.0"
     CDS             231..2225
                     /gene="Ift70a1"
                     /gene_synonym="4930506L13Rik; Ttc30a1"
                     /note="tetratricopeptide repeat protein 30A1;
                     tetratricopeptide repeat domain 30A; novel tetratrico
                     peptide repeat (TPR) containing protein; TPR repeat
                     protein 30A1; tetratricopeptide repeat domain 30A1"
                     /codon_start=1
                     /product="intraflagellar transport protein 70A1"
                     /protein_id="NP_084464.3"
                     /db_xref="CCDS:CCDS16154.1"
                     /db_xref="GeneID:78802"
                     /db_xref="MGI:MGI:1926052"
                     /translation="MAWQSSSKVPDGEFTAVVYRLIRDSRYSEAVQLLSAELQRSSRS
                     RAGLSLLAYCYYRLQEFELAAECYEQLSQMHPELEQYRLYQAQALYKACLYPEATRVT
                     FLLDNPAYQTRVLRLQAAIKYSEGDLPGARSLVEQLLSGEAGEDSGGENDPDGLVNMG
                     CLLYKEGHYEAACSKFLAALQASGYQPDLSYNLALAYYSSRQYAPALKHIADIIERGI
                     RQHPELGVGMTTEGIDVRSVGNTVVLHQTALIEAFNLKAAIEYQLRNFEVAQETLTDM
                     PPRAEEELDPVTLHNQALMNMDAKPTEGFEKLQFLLQQNPFPPETFGNLLLLYCKYEY
                     FDLAADVLAENAHLTYKFLTPYLYDFLDAMITCQTAPEEAFIKLDGLAGMLTEQLRRL
                     TKQVQEARHNRDDEIIKKAMNEYDETLEKYIPVLMAQAKIYWNLENYPMVEKIFRKSV
                     EFCNDHDVWKLNVAHVLFMQENKYKEAIGFYEPIVKKNYDNILSVSAIVLANLCVSYI
                     MTSQNEEAEELMRKIEKEEEQLSYGDPDKKIYHLCIVNLVIGTLYCAKGNYDFGISRV
                     IKSLEPYHKKLGTDTWYYAKRCFLSLLENMSKHMIVLCDGVVQECVQFLEYCELYGRN
                     IPAVLEQPLEEERIHTGKNTVTYESRLLKALIYEVIGWNM"
     regulatory      2827..2832
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ift70a1"
                     /gene_synonym="4930506L13Rik; Ttc30a1"
                     /note="hexamer: AATAAA"
     regulatory      2838..2843
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Ift70a1"
                     /gene_synonym="4930506L13Rik; Ttc30a1"
                     /note="hexamer: GATAAA"
     polyA_site      2850
                     /gene="Ift70a1"
                     /gene_synonym="4930506L13Rik; Ttc30a1"
                     /note="major polyA site"
     polyA_site      2862
                     /gene="Ift70a1"
                     /gene_synonym="4930506L13Rik; Ttc30a1"
ORIGIN      
        1 aatgtctgga ctacttgcaa caagtttctg tcccttctcc gacttctgtc ccaacccagt
       61 ttgtaatctt ataagacaaa acaaaaaaat tcagggatta tgtcaacggt tcctagtcat
      121 gcggaacaga tcctttctac ctcagaccta accgccaccc gctggatgaa cttccgtttc
      181 cggttaccta gtttccttgg aaactagcac gcgctacaat tttggcggct atggcgtggc
      241 aaagcagctc taaagttccc gacggtgagt tcacagcggt ggtgtacagg ctcatccgcg
      301 actcccgcta ctcagaggcg gtgcagctgc taagcgcaga gctgcagaga agctcccgca
      361 gccgcgcagg gctgtcgctg ctggcctact gctactaccg cctgcaggag ttcgagctcg
      421 ctgcagagtg ctatgagcag ctgagccaga tgcacccgga actcgagcag taccgcctgt
      481 accaggccca ggcgctgtac aaggcctgcc tgtatccaga agccaccagg gtcaccttcc
      541 tcctggacaa ccccgcctat cagactcgag tccttcgtct ccaggctgct atcaagtaca
      601 gtgaaggtga cctcccagga gccaggagcc tggtggagca gctgctgagt ggggaagctg
      661 gagaagacag tggaggggag aatgacccag atggtttggt caacatgggt tgtctgctct
      721 acaaggaggg acactatgaa gctgcctgct ccaagttctt agcggccctg caggcttctg
      781 gctaccagcc tgacctttcc tacaacttgg cattggccta ttacagcagt cggcagtacg
      841 cgcctgctct gaagcatatc gctgacatca ttgagcgtgg catccgtcaa cacccagaac
      901 tcggtgtggg catgaccacg gagggcattg atgttcgcag tgttggcaac actgtagtcc
      961 ttcaccagac tgctctgatt gaagctttca acctcaaggc agccatagag tatcagctga
     1021 gaaactttga ggtagcccaa gaaactctca ctgacatgcc tcctagagca gaggaagagc
     1081 tggaccccgt aaccctccac aaccaggctc tgatgaacat ggatgccaag cccacagagg
     1141 gctttgaaaa gctccagttt ctgctccagc agaacccctt tcccccagag acctttggca
     1201 acctgctgct gctctactgt aaatatgagt attttgacct ggcagctgat gtcctggcag
     1261 aaaatgccca cttaacttac aagttcctca caccctatct ctatgacttc ttggatgcca
     1321 tgatcacttg ccagacagct cctgaagagg ctttcattaa acttgatggg ttggctggca
     1381 tgctgactga gcagctcagg agactcacta agcaagttca agaagcaagg cataacagag
     1441 atgatgaaat tattaaaaag gctatgaatg aatatgatga aactcttgag aaatatattc
     1501 ctgtactgat ggcccaggca aaaatctact ggaatcttga gaattaccca atggtagaga
     1561 agatcttccg caaatctgtg gaattctgta atgaccatga tgtgtggaag ctgaatgtgg
     1621 cccatgtcct cttcatgcag gagaacaagt acaaagaggc cattggtttc tatgagccca
     1681 ttgtcaagaa gaattatgat aacatcctga gtgtcagtgc tattgtgtta gccaacctct
     1741 gtgtttccta tatcatgaca agtcaaaacg aggaagctga ggagctcatg aggaagattg
     1801 agaaggagga ggaacaactc tcttatggtg acccagacaa gaaaatctac cacctttgca
     1861 ttgtgaattt ggtgatagga accctgtatt gtgccaaagg aaactatgac tttggcatct
     1921 ctcgggttat caaaagcttg gagccttacc ataaaaagct aggcaccgat acgtggtatt
     1981 atgccaagag atgcttcctg tccttactag agaacatgtc aaagcacatg atagtgcttt
     2041 gtgacggtgt tgttcaagaa tgtgtccagt ttctagagta ctgtgaactt tatggtagaa
     2101 acatccctgc tgttttagaa cagcccttag aggaagaaag aattcacacc gggaagaata
     2161 cagtcacata tgagtccaga ctgttgaaag ctttgattta tgaggtcata gggtggaata
     2221 tgtagttgct tctgttactg acttttatga taaaggcttt gttatgttgg cattgtgttt
     2281 caactctaag cttttgaatt ttcacactct ttacatgtta tgcattgtct gatttaactg
     2341 tttattcagt tagatatagc ttttcttgat gagaaccttc attcaatgag atagcaaatg
     2401 aacccagaag catttattta aaataactga atggaggaag taccatccga taaagtttac
     2461 aacgtccaca tcttttcgtt gctgtttcat actgtgcttt gttgtttgtg aacaacatca
     2521 ttttacccat ggaggacacg tatctgccat gggccttagc tacatgacat ttgggcttta
     2581 gaagtagttt caggaattac atgctctgct ttagtttatc cttatgatca ttctctttgt
     2641 tgtgtagaag ttttgtacaa ttgtagattt taaagatttt cattgttttg gggttttgtt
     2701 ttatttttta aaggaagaag taacatttaa caacagtttt catgttgtta gtggctcttt
     2761 cctagaatgt tcaaaattca ctgtgaaatt gtttctaaaa aaaaaatagt actgttcttt
     2821 gaagctaata aacaactgat aaatatctga ttttttactg tt
//
