LOCUS       XM_006506152            4244 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus intraflagellar transport 56 (Ift56),
            transcript variant X1, mRNA.
ACCESSION   XM_006506152
VERSION     XM_006506152.5
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000072.7) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_006506152.4.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4244
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="6"
     gene            1..4244
                     /gene="Ift56"
                     /gene_synonym="9330141E21Rik; 9430097H08Rik; hop; hpy;
                     Ttc26"
                     /note="intraflagellar transport 56; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 29
                     ESTs, 130 long SRA reads, 1 Protein, and 99% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 12 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:264134"
                     /db_xref="MGI:MGI:2444853"
     CDS             127..1683
                     /gene="Ift56"
                     /gene_synonym="9330141E21Rik; 9430097H08Rik; hop; hpy;
                     Ttc26"
                     /codon_start=1
                     /product="intraflagellar transport protein 56 isoform X1"
                     /protein_id="XP_006506215.1"
                     /db_xref="GeneID:264134"
                     /db_xref="MGI:MGI:2444853"
                     /translation="MMLSRAKPAVGGESPHTDKRKKKGRKIPKLEDLLSQRDFTGAIT
                     LLEFKRHVGEQEDDTNLWIGYCAFHLGDYKRALEEYENATKEENCNPEVWVNLACTYF
                     FLGMYKQAEAAGFKAPKSRLQNRLLFHLAHKFNDEKKLMNFHQNLQDIKEDQLSLASI
                     HYMRSHYQEAIDIYKRILLDNREYLALNVYVALCYYKLDYYDVSQEVLAVYLQQIPDS
                     TIALNLKACNHFRLYNGKAAEAELKSLMDNASSPFEFAKELIRHNLVVFRGGEGALQV
                     LPPLVDVIPEARLNLVIYYLRQDDVQEAYNLIKDLEPTTPQEYILKGVVNAALGQEMG
                     SRDHMKIAQQFFQLVGGSASECDTIPGRQCMASCFFLLKQFDDVLIYLNSFKSYFYND
                     DIFNFNYAQAKAATGNTSEGEEVFLLIQSEKLKNDYIYLSWLARCYIMNKKPRLAWEL
                     YLKMETSGESFSLLQLIANDCYKMGQFYYSAKAFDVLERLDPNPEYWEGKRGACVGIF
                     QMILAGREPK"
ORIGIN      
        1 ctcagaagga ccagcctccc ggcggcgttg ccgtggaaac ggagctcgct gtgtggatgt
       61 ggcaactcgc cgaagcacag cctttgcaga ctatctgcag cgggggctca caggaccgac
      121 gccaagatga tgctttcaag ggccaaaccc gctgtgggcg gggagtcacc gcacactgac
      181 aaaagaaaga agaaagggag gaagattcca aaactagagg atctactttc gcagagagat
      241 ttcactggcg ccattaccct attggagttc aagcgccacg ttggggagca agaagacgac
      301 actaacttat ggattggata ctgtgctttt cacctgggtg actacaagag agctttggag
      361 gaatatgaaa atgcaacgaa ggaggaaaat tgcaatccag aagtgtgggt gaacttggcc
      421 tgcacctact tttttcttgg gatgtataaa caagcagaag ctgctgggtt taaagctcca
      481 aaaagccggc tccaaaaccg cctactgttc catctggctc acaagtttaa tgatgagaag
      541 aaattaatga actttcatca gaatcttcag gatatcaagg aagaccagct tagtttggcc
      601 tcaatccact acatgcgatc ccattaccaa gaagctattg atatatacaa gcggatcctg
      661 ctggacaaca gggaatacct ggccctcaat gtgtatgtgg ccctctgcta ctacaaactg
      721 gattactatg atgtgtctca agaagtcctg gctgtttacc ttcagcagat tcctgacagt
      781 accatcgccc tcaaccttaa ggcctgcaat cactttcgcc tttataacgg caaagcagct
      841 gaggcagagc tcaaaagctt gatggacaat gcatcttcac cctttgaatt tgctaaagaa
      901 ctcatcaggc acaatctggt tgttttccga ggaggcgaag gggctttgca ggttttacct
      961 cccctggttg atgtcattcc tgaagctagg ctcaacctag tgatttacta ccttcgtcaa
     1021 gatgatgtgc aggaagccta taatttaatc aaggatttgg aacccactac acctcaggag
     1081 tatatcctca agggagttgt caatgcagcc cttggccagg aaatgggttc aagggatcat
     1141 atgaaaattg cccagcagtt tttccagttg gtaggaggat cagctagtga atgtgataca
     1201 ataccaggaa ggcagtgcat ggcttcctgt ttcttcctac ttaaacaatt tgatgatgtc
     1261 ttgatttacc tcaactcttt taagagttac ttctataatg atgacatctt taactttaat
     1321 tatgcccaag ccaaagctgc aacaggcaat accagtgagg gtgaagaggt tttcctcttg
     1381 atccaaagtg agaaactgaa aaatgactac atttacctta gctggttagc tcgctgctat
     1441 attatgaata agaaaccaag actagcttgg gagctttatc tcaagatgga aacctctggc
     1501 gagtccttca gcctcttaca gctcattgcc aatgactgtt acaagatggg ccagttctac
     1561 tattcagcca aagcttttga tgtcttagaa agactggatc ccaaccctga gtactgggaa
     1621 ggcaagaggg gtgcctgtgt gggcatcttc cagatgatct tagctgggag agaacccaag
     1681 taagtgaaca aatggacaga gctgcctcta tccacctgcc cctgagagac cctccgagaa
     1741 gtgctgcatt tactgagaag cacaggaaac acccaagtgg agtatatcat caggatcatg
     1801 aagaagtggg ccaaggagaa tagagtgccc atctaagcag ccaaacccta ggccaggacc
     1861 agcttcctct cacgtcaaat tggaactgtt ttcttgcact tgaatatgca atccaggacc
     1921 ctgcttgatt gacatttctt tccttgctct tagagcatta ggatgagtgg gtggtatgtg
     1981 tggacttagg catcaggcaa caggaatctc cctggcctgc tgacacccaa tgtaatctac
     2041 tggtgccttt cttccataat cattctgaac actattctgt aatttactgg ctttaggaat
     2101 agatactagt tttgtttttc tttctctgtt agcatttcag gacatatctt ttttcttctt
     2161 cttttttttt tttttctgag acagggtttc tctgtataag ccctgcctgt cctggaactc
     2221 actttgtaga ccaggctggc ctcgaactca gaaatccacc tgcctctgcc tcctgagtgc
     2281 tgggattaaa ggcgtgtgcc accatgcccg gcaggacatt ttctcctacc tgcagtaaca
     2341 agtaccttta tactagagaa ttgccatcat ttgatcatat tccatcattt tgtacattag
     2401 cccatccatg actacatctc tgactcctgg gagacgtctt tctgagctgt gtgattctga
     2461 ggatggccat gaggccctct accaaacagc agtcagtagt agttagttag cttatgagac
     2521 cactctctgt gagtagcttg ttacgttgag acaagctgag tatatggttt taaaaaggtg
     2581 agtgaaagga aaaacttggc atctctgaag gtgtgtaagt ctcagagtta ggtctccctt
     2641 gtattttagg aaacaaagcc agggcagggt tcttactatc ttctgaatga acagcaattt
     2701 tgaacatagg actgggaaag ttttcatgaa atatatatat atgtatattt tttctgagac
     2761 agggtttctc tgtgtagcct tggctgtcat ggaactcact ctgtagacta ggctggcctt
     2821 gaactcggag atccgcctgc ctctgcctcc cgagtgctcg tatcaaagat gtgtgcacca
     2881 ctgctcagca tacgtacctg tttatattgc gcacacatga acacatcgta gggatttatt
     2941 gatacaagta taaagcaggt cctttgaaga gacctcctaa tggctagcct ctccatcata
     3001 tctcagcctc gtgtctctga gctgtcatca cataaacttc ttttttctac aacaaagtat
     3061 tgtcaggctt ccatcctact ttcagaaaac agacatacat ctttttgtgt atcagattac
     3121 ctgcttgttt gtatgctctg taattttctt ctgtaggtct gaggtacaca agctagaaca
     3181 tacagaccca tcctcataga gcagggactg cacagaggag gaggtggagg aatttttaga
     3241 aacaccatta attcttcttc cttcccagcc tcctgctgca gatggcagat gggagttctg
     3301 cacagaaagg agagggaaac ctgtacagag taaaacagct gaagcaacag gaccagaggc
     3361 tgaacacagc cttcatctct agccagtccc aaggtgttcc tcagctctgt atctctgagt
     3421 cctgggacaa gtcttcccga gaagatggcc agtgtgccat cttttacatt aggatcagat
     3481 atgattgggc caaagcacaa aacacagtac tggtctaaca gaactgcagg aaacaaaact
     3541 gcaccatttc cttatgccag agcttcttgt cttgttctgg tgttccctct ttttcagtag
     3601 cacctggttc tctttgccaa aggtactagg tggatcagat atgactaaac ctgctatagt
     3661 tctgtgaatc attcttatga aacttatttt gctttaaata cttggaagca aaagagtggg
     3721 atgcagatca actcctggga gctgttgaca tcttcagtga cacactgttc agttccagct
     3781 tcctgaaaga cactcattca cagtcatgga cttcccagtg agacattgtg agtttactac
     3841 ttagtagtct ctgacatttt ccttgagaga agacggtctg tccccaacag cagaatttta
     3901 gattactgtt aaaagttttt aatctacagg attgagacag aaacatgaag gcttgttaaa
     3961 gagaagcaca ttcaattctg ttaggaggga taattgtttc tgattgtctt gacagggcat
     4021 caagttcgta ctgtgttctc tcacagatga cagcctggaa aagaagggct tggctgggga
     4081 atgtgtaatt tatacagtct atcatagcaa tgtactattt aaaaatagtc tgtagtgtat
     4141 acttaaaaat ggaaaaaaca cttttacaac tatttttgta caacaaaaga atcacatacc
     4201 actgtactat atttaaatta aaatttattt tttggttttt gtca
//
