LOCUS       XM_006523407           10052 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus intraflagellar transport 140 (Ift140),
            transcript variant X5, mRNA.
ACCESSION   XM_006523407
VERSION     XM_006523407.5
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000083.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_006523407.4.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10052
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="17"
     gene            1..10052
                     /gene="Ift140"
                     /gene_synonym="mKIAA0590; Tce5; Wdtc2"
                     /note="intraflagellar transport 140; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 26 ESTs, 103 long SRA reads, and 97% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     10 samples with support for all annotated introns"
                     /db_xref="GeneID:106633"
                     /db_xref="MGI:MGI:2146906"
     CDS             786..3263
                     /gene="Ift140"
                     /gene_synonym="mKIAA0590; Tce5; Wdtc2"
                     /codon_start=1
                     /product="intraflagellar transport protein 140 homolog
                     isoform X4"
                     /protein_id="XP_006523470.1"
                     /db_xref="GeneID:106633"
                     /db_xref="MGI:MGI:2146906"
                     /translation="MALYFDHRIKAPDTPSSPSHITWHPTHPFLAVASISPSSGGNVD
                     IYLEQGEPVPDTHIERSFQATSLCWHPTRLILAIGWETGEVIMFNKQDKEQHTVPLPH
                     TTDIAILSWSTSGSCLVSGDKLGVLLLWRLDQRGRVQGTPLLKHEYGKALTHCIFRLP
                     PPGEDLVQLAKAAVSGDEKALDMFNWRKSSFGSFLKTGSQEGLSFFVSLMDGTVHYVD
                     EKGKTAQVASTDSSIQTLFYIERREALVVVTENLLLSLYVVTPEGEAEEVMKVKLSGK
                     TGCRADITLIEGSLLVTAIGEPVLRFWDLERGENYILSLQEKFGFEKGESINCVCFCK
                     AKGLLAAGTNKGRVAMWKKVPSFPNGRGAEGKDMWALQTPTELEGNITQIKWGSRKNL
                     LAVSSTESVSILSEQAMSSHFHQQVAAVQISPSLVNVSFLSTGGTHSLHTDMHISGVF
                     ATKDAVAVWNGKQVAIFEPSGSTLRNAGTFLCETSVLAMHEESIYTVEPNRLQVRTWQ
                     GTVKQLLLFSETEGSPCFLDVCGTFLVAGTDLAHFKSFDLSRREAKVHCSCKNLAQLV
                     PDVGSITSLRCNANGNKISILLSKVNNSPDSKIYIYDVEMDTVNVFNFTTGQIGQIQT
                     LPFNEPPTNETRSFMDKSLAGYTPVNHFWDQSEPRLFVCEALQEAPGAQPQAVDKQPR
                     VEEGTCHKEEVLILSFFASEEHGFLLHDSFPRPSTYQSLLGMEVPHYYFTKKPGEADK
                     EDRVDSGYYHIPQMVAKRPLRDFVGLEDCDKSTRDAMLNFSFFVTIGDMDEAFKSIKL
                     IKRCKTPPPRVHPCPLPELRFLYTPAY"
ORIGIN      
        1 ctttgaaaac aggtttaaga ccataaatgt atcgtagcat agtccactaa cacttttcct
       61 attcgaagcg ataaggaaat gtgtttttaa aactctaatg cttatgcatg tggcgtttga
      121 aaaaagtatc ccagtttgca ggaggtcccc gcctctggtt atccccttgg ctcattggcg
      181 tggaccgtgc tactgcgcct gctcttcagc gacactcgcc gttggctaac actggctaaa
      241 gtgcacacgg tcacccaggg aaccctgtgc ctagctgctg caagcctctg ctgagtaccg
      301 cttgcagcgg tctctcgagg catcaacgcg ccacgcgccg gggcggtgtc cggtactcag
      361 aacgttccag agaagctctc gagccgcgcc tccccatccg atgcaatgca actaagctcc
      421 gcgaggtgcc gactgatggc ctgcgtgggg taggcaggat gaactcgggg agaaaagtat
      481 taggagcctt gacgcagctt gccccgagta gcaaatagat ctggcccacc catcagcgga
      541 aaacccaaac tggtcctaaa gtgggcctaa gactcagagc tgcgccggga ggtaccgact
      601 gttttcggtt ctttccgccg caagtcacca gtggtcgttt cgggaggcat cggaggcgcg
      661 gctgtccctc gactgcttcc gctttcttta ccggcgttgt ccgggcaaca cggaggcaca
      721 gggaatctgg cgaagttaga ttcctatacc taaggtttca tccttgacta ggtctgtgcg
      781 tcatcatggc tctgtatttt gaccaccgaa tcaaagctcc agacacaccc agctctccct
      841 cccacatcac ctggcacccc acccacccat tcctggcagt cgcatctata agcccatctt
      901 ctggaggcaa cgtagacatc taccttgagc aaggtgagcc cgtgcctgac acccacattg
      961 agaggtcttt ccaggccact tcactgtgct ggcacccaac aaggcttatc ctggctattg
     1021 gctgggaaac tggagaagtg ataatgttta ataagcagga caaggaacag cacacagtgc
     1081 ccctgccaca tacgactgac attgccatcc tcagttggag caccagtggg agctgcctgg
     1141 tatctggaga taagcttggg gtcctgctct tgtggagatt ggaccagcga ggccgagtac
     1201 agggaacacc actcctgaaa cacgaatatg ggaaagcact cacccattgc atcttccggc
     1261 tcccccctcc tggggaggat ctggttcagt tggcaaaggc agcagtaagc ggggatgaga
     1321 aagccctgga catgtttaac tggagaaaaa gcagctttgg aagtttcctg aagacggggt
     1381 ctcaagaggg gctgtctttc tttgtcagtc tcatggatgg cacagtgcac tatgtggatg
     1441 aaaagggcaa gactgcccag gtggcatcca cagacagctc catccagacc ctgttctaca
     1501 ttgagaggag agaggcactg gttgtggtca cagagaacct tctcctgtct ctgtatgtgg
     1561 tgactcctga gggagaagct gaagaagtca tgaaggtaaa gttgagtggg aagacaggct
     1621 gccgggcaga tatcactttg atagagggca gccttctggt gacagctatt ggggagcctg
     1681 tgctcaggtt ctgggactta gaacggggag agaattacat actgagtcta caggagaagt
     1741 ttggctttga aaagggagag agtataaact gtgtgtgttt ctgtaaagcc aaaggtctcc
     1801 tagcagcagg taccaataaa ggacgagtag ctatgtggaa aaaagtgcca agcttcccaa
     1861 atggccgtgg ggcggagggc aaggacatgt gggcccttca gacccctact gagcttgaag
     1921 ggaacatcac acagataaag tggggctcca ggaagaacct tctggcagtg agcagcaccg
     1981 agtctgtgtc catcctcagt gagcaagcca tgtcgtcaca cttccaccag caagtagctg
     2041 ccgtgcagat ctccccgagc ctagtcaacg tgtctttcct gtccacgggg ggcacacaca
     2101 gcctgcacac cgacatgcac atcagtggag tgttcgccac caaggatgct gtggctgtct
     2161 ggaatggaaa acaggtggcg atctttgaac cttcaggatc caccttaagg aatgcaggga
     2221 cattcctgtg tgaaacatca gtgctagcca tgcatgagga aagcatttac accgtggagc
     2281 caaaccgact ccaagtccgg acctggcagg ggactgtcaa acaacttctg ctattctctg
     2341 agaccgaggg gagcccctgc ttcctggacg tctgtgggac tttcctggtt gcagggacag
     2401 atttagctca ttttaaaagt tttgatcttt ccagaaggga agcaaaagtg cactgcagct
     2461 gcaagaacct ggcccagctg gtccctgatg tggggagcat cacttctctg agatgcaatg
     2521 caaatgggaa caagatcagc atcctcctta gcaaggtcaa caacagtcct gattccaaaa
     2581 tctacatcta tgatgttgaa atggacacag tgaacgtctt caacttcaca actggacaga
     2641 ttggacagat acagactctg ccctttaacg agccgccgac taatgagacc cgttccttta
     2701 tggacaagag cctagcaggt tacacgccgg tgaaccattt ctgggatcag agtgagccca
     2761 ggctctttgt gtgcgaggcc ttgcaggagg cccctggagc ccagccacag gctgtagaca
     2821 agcagccccg tgtagaggag ggcacatgcc acaaggaaga agtgttgatt ctctccttct
     2881 ttgcttctga agagcatggc tttctgctcc atgacagctt cccccggcct tcaacctacc
     2941 agagccttct gggcatggaa gtgcctcact attacttcac aaaaaagcct ggagaagcag
     3001 acaaagaaga cagggtggat tctgggtact accacatccc tcagatggta gccaagaggc
     3061 ccctacgaga ctttgtgggg ctggaggact gtgacaagtc tactcgggat gccatgctca
     3121 actttagctt ctttgtcacc attggagaca tggatgaagc tttcaagtct atcaaactca
     3181 tcaagagatg caaaacacca ccgcctcggg ttcatccgtg tcccctaccg gagctgaggt
     3241 tcctctatac ccctgcatat tgacatctgt atgtctattt agaatgttcc actcactcag
     3301 aaaaccaccg ccgctttcca actcaggatg gccctgtgta gtccagagca aagagcagca
     3361 tcaagagaca ggcaaggtag gggacagaga gacaaagaca acagctttga cttctctaaa
     3421 acgtgggggc cctgacctca tcctcactgg accttccagg aggagagaac agatggagtt
     3481 tgctttcctc taccttatcc taagctatta aaactcacgt tcggggtcac tatagtactt
     3541 tgtggatttt tcatgcatga aaatttcata catgaaaata ctatttaaat ttgcattcca
     3601 aaatggctgt ggtggctcac atctttaatc cagacactca gagtatacag atagaggcag
     3661 gtgaatctct tgtgttcaag gcctggtcta atgagcaagt tctagaatat acacagacgc
     3721 acatgcgcgc acacacttgc attccacctg ctactagagg caacttctct accagtgaag
     3781 gagagttagg cttctcttta acagcttcat tccataggca ttcatattag tagagtaaag
     3841 ctgatatttt gttaacagat ttagaaatac tttgtgttct cttattctca tatctttggg
     3901 catgtttatc aaccaaaaga ctttctgatt ttgtcttttg ttgttgtttt ctttttgatt
     3961 ttgattttga tttttttttt ttttttttga gtcagagttt ctataggtag ccctggctga
     4021 tctggaactc agaaatccgc ctgcctctcc ctcccaagtg ctgggattaa aggtgtgtgt
     4081 caccacgccc agctagccaa aggaattttt tttatgcttg tttcggaaac agaaaaaaga
     4141 ttagaatcga ggcagactgg gtacacagag gttgctagct tatgtcttct gaaacaataa
     4201 atagtaaaca aggagggata tgaagcctaa ggaagcaaaa gcaagcagaa agaaatatgc
     4261 caatatgcat ccctagtgtg taagaaggaa gagactgagg gtaacccctt acaagaagtt
     4321 tccatggggc tggagagatg gctggatgat actgagtgca tactgttctt gcaggggacc
     4381 tgatttcggt ttttagcacc catgttgggt ggcttacatg tgcctgtcac tctagcccta
     4441 acgggtgcag cacactcttc tcagcccctt cagtacctgc actcactctt aatgagtgag
     4501 tgcacacaat tttaaaatat ttttaaaaga attagcctgg ggccgggcag tggtggccca
     4561 cttaatccca gcactcggga ggcagaggca ggcagatttc tgagttcaag gccagcctgg
     4621 tctacagagt gagttccagg acagctacac atagaaaccc tgtctcgaaa aaccaaaaaa
     4681 aaaaaaaaaa gagagagaga ataattctga accttctggt caagactaat aatatgcagt
     4741 catgtgacta gggaagttag caagggggaa aacagcaagt tttggcgcgt gcagggccga
     4801 gagacctgct ctactcatta aggtgtggtg tggccctggg ctcaccgttg cactctcagg
     4861 agcgtgtagt catgattcaa atgagcctcc tctgagaggg gcccccaggg gacagcccag
     4921 catggactgc atttcagcaa agagaaggga ggagagtctc agatgtggtg gtcccggagg
     4981 acatacaaga gcacatacag gcagtccctc caaacagttc acactcagcc gactgtatct
     5041 ctagaaaata tgtaggctct aaaactgtca aaatagtctg atgttactgg accagcacag
     5101 aagggtcacc ttgagggagc agtctttgtg gtcagtttgt cccacatgtc ggagtcatgc
     5161 ctgctttaac tcctctgtat gcatgtgtca cgacgacgaa acatgtcaac agattgaggg
     5221 tcaagcactt tctgctgcta gatttgcagg agtgacctgc tccacagttc catgttctaa
     5281 gtgctggctg acactgccga ggacattggt catcagatgc cgcctcttca gtcaccgagc
     5341 aaaacttagg ccttccccac gcatgaaatg cttcatggct tcctgatgcc tctgctcctc
     5401 agcttggcag ccctgcctgt cctgacacct ctttccctgc cactcctggc ttccgctcgc
     5461 ccctgctgct tcgtggttag gagagattta gttgttcagt gtggctgtcc cttggctatc
     5521 ttacggtgcc tggtgtcctc ctttggtttc tatctcccat gtctgggagt gccgtaatcc
     5581 aaggatacca aggatgctcc agagtaccaa ggactgtcag gaactgtgtg ctaagtaact
     5641 tgaggcaaat cacagcaaat gggaaaccga ataggctggt gtgagcctgt ggaaaagaag
     5701 gaaagggcat gcccgcctga gctccgctgt gaccccgctg cccctgctga gtaaaggcca
     5761 tggaggagcc ggctggcacc ttgtagggct ttgtgtttgt cttgttgttt ttgttttctc
     5821 tgtgtagccc tggctgacct ggcatttgct cgcaggccag gctagcctta aactcagaga
     5881 tctgcctgcc tctgcctctt gagtgcttga attaaagtca tgtgccaccg ttgcccagct
     5941 actttgatct taaagttgat cagaattagt ctcacaagac tgaagccacc cccagctaag
     6001 attcccaagg accatgcgag ggattagcac tggcgctcat aggtggccaa tgatttgttc
     6061 caggatggcg actttacagc tccatcaaag ggatccagac ctttccataa ctagctatat
     6121 tatttattat gcacacaaac taaagtttca gaagacgtat ctacttccag gaacaacaga
     6181 gaagatgaaa gagcactcat cccgttgatg agttaattaa agagatgtaa gttgacatgt
     6241 gcataaaaga ccttgtagag ccctctatgt tctgaaagta taaattggaa agtaaaaact
     6301 gtagatatgg gctgggtaga tggctcagtt ggccaaaacc ctgcaataca agtatgaaga
     6361 cataaattaa gatgccccca caaaagctat gtttagaaaa caaaacaaaa caaaactggg
     6421 cagtggtagt gcacggcttt aatcccagca cttgggaggc agaggcaggc aaatctctct
     6481 gagtttgagg ccagcctggc tacagagtga gttccaggac agccagagtt aaaacagaga
     6541 aacccaatct caaaagacca aatgaatgag tgaatgaatg aatgaatgaa tgaatgaatg
     6601 aatgaatgaa gctcagcatg gtggtgcata tctgtaccca acctcagtgg ggagtggtag
     6661 ggagggaccg gtggatcctg aagctcaagg ggcagtcact agtctctagc tgaatcgagg
     6721 agcgtcaggt tcactgagag atcctgtctc aaaactaaag gtgcatgatg aggaaagaca
     6781 actaatatag acctcagggc accacacagg catgtgcaca cacagccaca ctaacaagta
     6841 catacggcat gcacacacac caactcacac acacatacat aaacatggag cctgactgat
     6901 acacacttta caaaggaaaa gtgagctgga cggcccttca cctggttcat cggtagtcat
     6961 ggaaacccag cagcatgtgg cctgcctggg gctgggctgg ctgagttcca tgtgtctccc
     7021 ctttcccact ggagtgaaag tcagaggctg cacttcactt gctttttcat attaaaaaaa
     7081 aaaagtagaa aggaaagtct aggtggtttt ctgtgaaaaa agcaaagcat aactatgtac
     7141 taaagtctca tactagatat tgctgtggta gcatccgcct acaatcccag agctagggag
     7201 gcagagatgg gaaggtgagt gccaggcctg cctgggctac atagagagac cctctctcaa
     7261 aaaacaaaag caaatggttg acacatcact cgttctgggt attgatcagt ttaagtttca
     7321 gttcagttgt cagtcagctt tgaccacgtt agaacgcata tagaaagggg aaatggaata
     7381 gtctgcccat tcccaatatg gagccctaca ggaaatctga gcaagggacc taggtgagcc
     7441 aaggccagcc caggggcaga gtcctacaaa gagggggcct gatacattgt aacaggcata
     7501 gatagctctt agcatcctct agctccacag ttggctgcca tccaagacct gccgtgaacc
     7561 aacagatagg acggtatagg ctaagagatg ataggaagaa atcaccccgt tattcagtgt
     7621 cattaataaa aagcagataa accgtgggag agcagaggtg tgacgctgcg tgaactcact
     7681 gcatcgccac gtgaccctgg cctctgggag aaggcgccac gagaaggcgc cacatccatc
     7741 gtgtactaca gacattattc tgaagtaagg tcagcttcta cttgtggggc ctctgtgctt
     7801 gggaaaggat ggatgaaggc cctcagtgtg ggccaaggtt ggcttagaaa tcctactttc
     7861 atccccccta agttaggttc cctttctcct ccgtgtcctt tcccctgaag acttctctcc
     7921 cccaaatttt cagtgatgta atcagcctgt ccagaaacct ccagaaggga agtgagtgct
     7981 tcagcgagtg ctctgttctg cacacacggg atcagttcca tctctatgaa gtcccgttgc
     8041 caaagcaaac agcctcttcc tctgctccgg ccagcccagc ggagggcggt gtgaattcca
     8101 gcacagtgga gagcgcccct ttcctctctt tcttccttcc tgccttcttc ctggggccta
     8161 agcttctgtc acagagtctt cccttttgga atgactatca aacatacaca caggtggcat
     8221 cagaggaaag acactggggt tgacctctgg tgctcctcgg caattgagca agcaaagtgc
     8281 tggtgcctta gagggaacag gaccggcttc taagatgcat cctgacaaag ggtcagttgc
     8341 agacactgcc agccttggca tgtccagcat gtgtagccag catgtgtaat aagggaagac
     8401 gagcaaacca gacttctacc tcttccatca tagtgttcaa tcccttgtgt aaggagactc
     8461 ggcagtacag gacatgagcc tgatttttta tccaaatggt tctttctagt agaaggatcc
     8521 gtagcattga ggaacgggtg atcacgttct tctattgctc ccaaatggct cagttgggta
     8581 aggaagaagg ggaggagaga taaggtatac ctaggaccaa gcagggtggt gcttgaggac
     8641 cagataaaga agacagaaaa ggaaatcacc ccgaccgagc aaagcctaat caaaagtact
     8701 tacagttact aggaaaggat gaaggaaacc attattcgtg acacaggaga agctctggaa
     8761 gtctgggaca aggggagtta ttattgttgg ggaaggttgg ctgcatcttt gtttgttttg
     8821 agacggagtc ctatgtagcc ctgactaact cagaacttgc tctgtagacc aggctgacct
     8881 ttaacctctg cctgcctctg cctcccaaat gctgggatta aaggtatgtg ccaccatgcc
     8941 tggcctctgg caatatttga ccaggttcag aactggctga gccaagaaca actaaggaac
     9001 aactcagagc ccagtgttga aagtcgtctt ggtggtgcta acatccactg tctaatagtg
     9061 catgacttgg tttgtaatgc tttgtcagtg agctttgcaa agtctgagct gcaaaagtca
     9121 ccatgcatac atacatacat acatacatac atacatacat acatacatac atacatgttg
     9181 gagaagagac aggcttagat tccaccatga aggtagcttt gagtaaagta attaattatg
     9241 gaatagctta cacaacccac ctttcccagg acatctctgg gcatcaggaa gacaaattgg
     9301 caccatatgc tgtgcttggg acttcttgtt tgctgtttgt tcgattggtt tgcttgttgg
     9361 ctatatactg ccattgtcca aagagatttg gaaatgggct atataaacta taatgctaat
     9421 gggagagaag aggagttctt aaaggagaat gcagataagg aacatggcct tcaagactac
     9481 acattcactc ttccaagacc tccagctccc atctctctgg ctcccagaac aaaactgtag
     9541 aacttcctaa gcctggcatt ccacagggaa gatgccataa gcccttgcat ggattggtag
     9601 tgacacacag gcacatcgaa gggcatcgtg ttgcccttcc agcctgaccc ggtgtgcaat
     9661 gccctcatag cgggctcctt aggcaacagg gcattccagg catgtactgg gacctgaaga
     9721 atttggaagt cctcaacatc catgtagggc tgaggcacct cctaagcaga gctgtgaacc
     9781 aaccctagct ccttacactg ctccaggtgc tgcttggtgc cagcgaagag ccagaggcca
     9841 cacaagctca ttgcctttat agagcgctta ccctcaccta gtcagggcta cttttcctgt
     9901 acctgtgcta catggtgagt tgcaggccaa cctgagctac ataataaagg aaataagggc
     9961 tgctgggaat ccagctcagt ggtaaggtgc ttgctaatgt gtgggaaact tcagctcatt
    10021 atttagcacc attaaaaaaa tggtgcggca aa
//
