LOCUS       NM_001368798            2630 bp    mRNA    linear   ROD 05-AUG-2023
DEFINITION  Mus musculus interferon activated gene 213 (Ifi213), transcript
            variant 3, mRNA.
ACCESSION   NM_001368798
VERSION     NM_001368798.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2630)
  AUTHORS   Brunette RL, Young JM, Whitley DG, Brodsky IE, Malik HS and Stetson
            DB.
  TITLE     Extensive evolutionary and functional diversity among mammalian
            AIM2-like receptors
  JOURNAL   J Exp Med 209 (11), 1969-1983 (2012)
   PUBMED   23045604
REFERENCE   2  (bases 1 to 2630)
  AUTHORS   Cridland JA, Curley EZ, Wykes MN, Schroder K, Sweet MJ, Roberts TL,
            Ragan MA, Kassahn KS and Stacey KJ.
  TITLE     The mammalian PYHIN gene family: phylogeny, evolution and
            expression
  JOURNAL   BMC Evol Biol 12, 140 (2012)
   PUBMED   22871040
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC117682.11.
            
            Transcript Variant: This variant (3) encodes the longest isoform
            (b).
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMN01164135
                              [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-253               AC117682.11        156903-157155
            254-538             AC117682.11        160870-161154
            539-645             AC117682.11        162131-162237
            646-1599            AC117682.11        165715-166668
            1600-1667           AC117682.11        173977-174044
            1668-2630           AC117682.11        181257-182219
FEATURES             Location/Qualifiers
     source          1..2630
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="1"
                     /map="1 80.49 cM"
     gene            1..2630
                     /gene="Ifi213"
                     /gene_synonym="E030037K03Rik; E430029J22Rik; Pydc4; Pyr-A"
                     /note="interferon activated gene 213"
                     /db_xref="GeneID:623121"
                     /db_xref="MGI:MGI:3695276"
     exon            1..253
                     /gene="Ifi213"
                     /gene_synonym="E030037K03Rik; E430029J22Rik; Pydc4; Pyr-A"
                     /inference="alignment:Splign:2.1.0"
     exon            254..538
                     /gene="Ifi213"
                     /gene_synonym="E030037K03Rik; E430029J22Rik; Pydc4; Pyr-A"
                     /inference="alignment:Splign:2.1.0"
     CDS             262..1800
                     /gene="Ifi213"
                     /gene_synonym="E030037K03Rik; E430029J22Rik; Pydc4; Pyr-A"
                     /note="isoform b is encoded by transcript variant 3; pyrin
                     domain containing 4"
                     /codon_start=1
                     /product="interferon activated gene 213 isoform b"
                     /protein_id="NP_001355727.1"
                     /db_xref="GeneID:623121"
                     /db_xref="MGI:MGI:3695276"
                     /translation="MTGEMVNYCKQIVLLSGLEYMNDYNFRALKSLLNHDLKLTKNMQ
                     DDYDRINIADLMEEKFPEDAGLSKLIEVCEDIPELAARVDILRKEMEKVKNKTKIKSE
                     SSPPPLTSSLMEAWEVEPAMVTASSEESKDTIPESPDTMTTPFLKEKPKIPLLSATST
                     SQAEGEPLTPQRFPTTASSSLQTPLEPTEISSTILVTSQGSSAPYSTCDKSSRVPPVT
                     ASSSIQTIQTCLATSTLPCSHQATLKSPKTEPSSVQATQMTQAIKASGHNCPQVPTAA
                     VSSSFIKPQVTSARLLSGVQTPLMPQATVPSRAQTFRLTPAKMTSGCNSPQMSAATVY
                     SSYSNPHVTPVPSSVQILQMNLAAMTIGCNSPHVSAATVSSHYNNPWVTPATFPGSAQ
                     TLQLYPAAMAHGCNSPQVSAATISSSYNNTPQVSSVTVPRSFPAMSLSPATPLKARIG
                     SHLGATDQLVKDHQFEDNEVKTTHFGCRNDSPSKIVIKDGVEDADLLRTAPDPDNAEL
                     VSGS"
     exon            539..645
                     /gene="Ifi213"
                     /gene_synonym="E030037K03Rik; E430029J22Rik; Pydc4; Pyr-A"
                     /inference="alignment:Splign:2.1.0"
     exon            646..1599
                     /gene="Ifi213"
                     /gene_synonym="E030037K03Rik; E430029J22Rik; Pydc4; Pyr-A"
                     /inference="alignment:Splign:2.1.0"
     exon            1600..1667
                     /gene="Ifi213"
                     /gene_synonym="E030037K03Rik; E430029J22Rik; Pydc4; Pyr-A"
                     /inference="alignment:Splign:2.1.0"
     exon            1668..2630
                     /gene="Ifi213"
                     /gene_synonym="E030037K03Rik; E430029J22Rik; Pydc4; Pyr-A"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gagcagctga gcagtgactc tacccagtgt cagctttcca tctctctctc tgaaaacact
       61 ttattttctc agaatttcag gagattacaa aatcctctgt atcaccttct gagagattta
      121 ctgtttactt ttttatcttc acacacacac acacatacac acacacacac acacactcac
      181 ttgctcactt gctcattcac tcactgcttc ctgccctgca aaactggata ccactgaaga
      241 attttctgaa gaggcttatc catgactgga gagatggtga attactgcaa gcaaattgtt
      301 cttctctctg gattagaata tatgaatgac tataacttta gagcacttaa gtccttactg
      361 aaccatgacc taaaactgac taagaacatg caagatgatt atgacagaat taacattgct
      421 gacttaatgg aagaaaagtt cccagaggat gctggattga gcaaactgat agaagtatgt
      481 gaagacattc cagaacttgc agctcgtgtt gatatactta gaaaagagat ggagaaagtt
      541 aaaaataaaa ccaaaataaa atcagaatcc agccctcctc cacttacctc cagcctgatg
      601 gaagcttggg aagtagaacc agctatggtg acagcttcat cagaggaaag caaagatact
      661 atccctgaat cacctgatac catgacaaca ccgtttttga aggaaaagcc taagattcca
      721 ttactttcag caaccagcac aagccaggct gagggtgaac ccctgactcc tcagagattt
      781 ccaacaacag cctccagcag tctccagaca cccctggagc ctacagaaat atcgtccacc
      841 atattggtaa catctcaggg ttcttcagca ccatattcca cctgtgacaa atcttctcgg
      901 gtgcctccag tgacagcctc cagcagcatc cagaccatcc agacatgtct ggcaacctca
      961 acacttcctt gtagtcacca agctactctg aagtctccaa aaacagagcc cagcagtgtc
     1021 caggccactc agatgactca agcaataaag gcaagtggtc ataattgtcc tcaggtgcct
     1081 acagcagcag tatccagcag tttcattaaa cctcaggtga cctcagcaag gttactcagt
     1141 ggtgttcaaa ctcctttgat gcctcaagca acagtgccca gccgtgccca gacctttcga
     1201 ctaaccccag caaaaatgac cagtggttgt aatagtcctc agatgtctgc agcaacagta
     1261 tacagcagtt atagtaaccc tcatgtgact ccagtgccca gcagtgtcca gatcttgcaa
     1321 atgaacctag cagcaatgac cattggttgt aatagtcctc atgtatctgc agcaacagta
     1381 tccagccatt acaataaccc ttgggtgact ccagcaacat ttcctggaag tgcccagacc
     1441 ttgcaactct acccagcagc catggcccac ggctgtaata gtcctcaggt gtctgcagca
     1501 acaatatcca gcagttacaa taatacccct caggtgtctt ctgtaacagt gcccaggagt
     1561 tttcctgcca tgtctctgtc tccagcaaca ccactcaagg caaggatagg atctcatctg
     1621 ggtgctacag accagctggt aaaggatcac cagtttgagg acaatgaagt gaagacaacc
     1681 cattttggct gccggaatga ctcacccagc aagatagtaa tcaaggatgg tgtggaagat
     1741 gctgacctcc tgaggactgc tcctgatcct gacaatgctg aacttgtctc aggttcctag
     1801 tataatgggc gaacagagat gggccattct ctcgactttc cctaaaccaa tgccagttca
     1861 ccatgatgct atagtttttc caaaattctt tactaccaat aaaacattgg atttaccata
     1921 tctaccctat gatcccacct gagcaccatt aggagaaaat cgctctttat tagaacagga
     1981 ttctttatgc tttcaaatta atggaccagg aaaatttatc aacctcacag cctgagcctt
     2041 ggggatgttt gatgggaagc gaggaggctg ggtgagaacg acccaagata cttccaacac
     2101 aggtataacc attacaaatc ggaccttctg gcaggaggca atttgggtta atggtacatt
     2161 tctaccacct aacttttcaa acaaagaaca tccccaccaa ccaagaatag ccccccattg
     2221 tagcttggaa gacaaagggc tgatcctgcc ttggtctgat tgtcaatcct ccatcactcg
     2281 ttgggaagat tagagtaaaa ccttttcctt ttctcccaat atgttggctg acccagagaa
     2341 ggaatttatt atgagacagg gacttttcct acaggacttt agaattcatc cctttcacaa
     2401 gtgggtgctc tgtggagtca atggcagctg tacagaactc attcctttga tctttatcca
     2461 gggaggagcg gctggaaagt cctcttttac tggcatctca agatttgttc agtattggag
     2521 aataaatgct gcctccctgg actctgatgg atataccaga tatactaatt ccagtgtaga
     2581 gatcactggg ttcaataaaa ctttggtaaa cctgattaat tatccaccta
//
