LOCUS       NM_001205173            5732 bp    mRNA    linear   ROD 05-AUG-2023
DEFINITION  Mus musculus intermediate filament family orphan 2 (Iffo2),
            transcript variant 1, mRNA.
ACCESSION   NM_001205173
VERSION     NM_001205173.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 5732)
  AUTHORS   Sharov AA, Piao Y, Matoba R, Dudekula DB, Qian Y, VanBuren V, Falco
            G, Martin PR, Stagg CA, Bassey UC, Wang Y, Carter MG, Hamatani T,
            Aiba K, Akutsu H, Sharova L, Tanaka TS, Kimber WL, Yoshikawa T,
            Jaradat SA, Pantano S, Nagaraja R, Boheler KR, Taub D, Hodes RJ,
            Longo DL, Schlessinger D, Keller J, Klotz E, Kelsoe G, Umezawa A,
            Vescovi AL, Rossant J, Kunath T, Hogan BL, Curci A, D'Urso M, Kelso
            J, Hide W and Ko MS.
  TITLE     Transcriptome analysis of mouse stem cells and early embryos
  JOURNAL   PLoS Biol 1 (3), E74 (2003)
   PUBMED   14691545
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BB620602.1, BX000454.33, AL831790.3 and AW487845.1.
            
            [WARNING] On Oct 19, 2023 this sequence was replaced by
            NM_001205173.2.
            
            Transcript Variant: This variant (1) represents the longer
            transcript and encodes the longer isoform (1).
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR11927936.1484328.1,
                                           SRR7652917.226081.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-593               BB620602.1         2-594
            594-878             BX000454.33        15919-16203
            879-939             BX000454.33        43819-43879
            940-1035            BX000454.33        45605-45700
            1036-1176           BX000454.33        47028-47168
            1177-1316           BX000454.33        48211-48350
            1317-1437           BX000454.33        54400-54520
            1438-1530           BX000454.33        54632-54724
            1531-1661           BX000454.33        55537-55667
            1662-4044           BX000454.33        56934-59316
            4045-5333           AL831790.3         2001-3289
            5334-5732           AW487845.1         1-399               c
FEATURES             Location/Qualifiers
     source          1..5732
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="4"
                     /map="4 70.73 cM"
     gene            1..5732
                     /gene="Iffo2"
                     /note="intermediate filament family orphan 2"
                     /db_xref="GeneID:212632"
                     /db_xref="MGI:MGI:2140675"
     exon            1..878
                     /gene="Iffo2"
                     /inference="alignment:Splign:2.1.0"
     CDS             229..1767
                     /gene="Iffo2"
                     /note="isoform 1 is encoded by transcript variant 1"
                     /codon_start=1
                     /product="intermediate filament family orphan 2 isoform 1"
                     /protein_id="NP_001192102.1"
                     /db_xref="CCDS:CCDS57308.1"
                     /db_xref="GeneID:212632"
                     /db_xref="MGI:MGI:2140675"
                     /translation="MVNSLLFGEMALAFGCPPGGGGCAGGGGGGGAGPGPSPVTAALR
                     DDLGSNIHLLKGLNVRFRCFLAKVHELERRNRLLEKQLEQQQSERDRRLRYKTFSREQ
                     AVQTGPELLRPSAAGSGQALGAATGVNANAVALGGLPPGGGSHPQHYGRLPGTIWSYT
                     QVRRTGGGGVETVQGPGVSWVHPDGVGVQIDTITPEIRALYNVLAKVKRERDEYKRRW
                     EEELAKRMNLQTMVDTLQEAAQEAEAIQEEMNEKIERLKAELVVFKGLMSDPMTDLDT
                     KIQEKAMKVDMDICRRIDITAKLCDVAQQRNSEDVSKIFQVVPKKKDRKVASDEDISE
                     QDGEVNRFSDEEVGSMNITDEMKRMFNQLRETFDFDDDCDSLTWEENEDTLLLWEDFT
                     NCNPTIDLQGEQEENLGNLIHETESFFKTRDKEYQETIGQIELELATAKSDMNRHLHE
                     YMEMCSMKRGLDVQMETCRRLIKGSADRNSPSPSSVASSDSGSTDEIQEDLEREADVE
                     PMVS"
     exon            879..939
                     /gene="Iffo2"
                     /inference="alignment:Splign:2.1.0"
     exon            940..1035
                     /gene="Iffo2"
                     /inference="alignment:Splign:2.1.0"
     exon            1036..1176
                     /gene="Iffo2"
                     /inference="alignment:Splign:2.1.0"
     exon            1177..1316
                     /gene="Iffo2"
                     /inference="alignment:Splign:2.1.0"
     exon            1317..1437
                     /gene="Iffo2"
                     /inference="alignment:Splign:2.1.0"
     exon            1438..1530
                     /gene="Iffo2"
                     /inference="alignment:Splign:2.1.0"
     exon            1531..1661
                     /gene="Iffo2"
                     /inference="alignment:Splign:2.1.0"
     exon            1662..5716
                     /gene="Iffo2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agtcgcggcg caggcaccgg acccctcacc agccccacgc agccaccgcg acctccagct
       61 cgtcccacca tctctcccga cgcagcggag ccgcatctgg cacctaacac caccccggcc
      121 gctctggagc ccgcgcccgc cctggcccgg ccgcgccggg agcccggccc cgagctggag
      181 ccgcatctgg agccacgggc ccggggccct gagccacgca gccggcgcat ggttaactcg
      241 ctgctgttcg gagagatggc cttggccttc ggctgcccgc cggggggcgg cggctgcgca
      301 ggcggcggcg ggggtggcgg ggccgggccg gggccctcgc ccgtaacggc ggcgctgcgg
      361 gacgatctgg gttccaacat ccacctcctc aaggggctca acgtgcgttt ccgctgcttc
      421 ttggccaagg tgcacgagct ggagcggcgc aaccggctcc tggagaaaca gctggagcag
      481 cagcagagcg agcgcgatcg gcggctgcgc tacaagacct tctcccgcga gcaggccgtg
      541 cagaccgggc ccgagctgct gcggccgtcg gctgcgggaa gcgggcaggc cctcggcgcg
      601 gccaccggcg tcaacgccaa cgcggtggcc ctgggcggcc tgccccccgg cggcggctcg
      661 cacccgcagc actacggtcg cctgcccggg accatctgga gctacacgca ggtgcggcgc
      721 acgggaggcg gtggcgtgga gactgtgcag ggccccggcg tgtcgtgggt acacccggac
      781 ggcgtaggcg tgcagatcga caccatcacg ccagagatcc gcgctctcta caacgtgctg
      841 gccaaggtga agcgcgagcg tgacgagtac aaacggaggt gggaggagga actggccaaa
      901 cgcatgaacc ttcagaccat ggtggacacg ctgcaggagg cggcgcaaga agccgaggct
      961 atccaggagg agatgaacga gaagattgag cggctcaagg ccgagctggt ggtgttcaaa
     1021 gggctcatga gtgaccccat gacagacctg gacacaaaga tccaagaaaa ggctatgaag
     1081 gtggacatgg acatctgccg ccgaatcgat atcacggcta agctgtgtga tgtcgcacag
     1141 cagaggaact cagaagacgt gtccaagatc ttccaggtgg tccctaagaa gaaagatcgt
     1201 aaggtggctt cggatgaaga catctcggag caggacgggg aggtgaatcg gttttcagat
     1261 gaggaggtcg gctccatgaa catcactgat gagatgaagc gcatgtttaa ccagctgcgg
     1321 gagacctttg attttgatga cgactgtgac agcctgacgt gggaagagaa tgaagacaca
     1381 ctgctgctat gggaggattt taccaactgt aacccaacca ttgacctgca gggtgagcaa
     1441 gaagaaaact tgggcaactt gatccatgag accgaatcct tcttcaagac gagagacaag
     1501 gagtaccagg agaccatagg ccagattgag ctggagctgg ccacagccaa gagcgacatg
     1561 aaccgacacc ttcatgagta tatggaaatg tgcagcatga agcgaggcct ggacgtgcag
     1621 atggagacct gccgtcggct catcaaaggc tctgcagaca ggaattcacc gtcccccagc
     1681 tccgtggcca gcagtgactc aggaagtaca gacgaaatcc aggaagacct ggagcgggag
     1741 gcggatgtgg agcccatggt cagctgatga cggaggcccg acgctcctgg tggtcttggt
     1801 gatggggtcc agcctcctct ccccactgag ccgtgtgggc tccactcctc gacacagact
     1861 tctgtcctcc cttctccgga ggcccagcgg gaccgctgct tccttccttc ctccaccacc
     1921 gacccatgga atggtgctgt cgatttttct attgtcccca cacacaccac aaacgcagac
     1981 ttttgtgcgt cgatgcagtg caactgtgcc ttctccctta agctgagcca ctttgagctc
     2041 caaagaattc ttcctagcag gtgttttttt aaatataaaa ctctaaggtg agggtggggc
     2101 ctggaggcgt ggtagctttt ggttttctcc ctcccacctg ctcctctgat tggacatgag
     2161 ctttgctccc tccctctgtc ccaagatgac ttgcggtggt ctgctttctc aaggaagtag
     2221 actgtgttac ctccagagct gggcgaggag gagtcgtcaa tactttctca cccagggata
     2281 gagtggtgga cggaagtgga gggagggaag accaattttt ttcttcttct tttggatcta
     2341 gtggcgatgt atcggggaaa ggcactgtgg gggaaggaag aacctcactg tgtttaaact
     2401 atgcaaaaaa caaaaacaaa aaacaaacaa acaaaaaaac ctaaaagcag cttgccttat
     2461 atcattgggg aaggcaggcc ctctctcaga cttctgggaa ctgggagaga ggccaaggtt
     2521 ggcatgagtc cctcatagcc tctgaggttc agaggtggct ttgggggtgg tcccagtcag
     2581 attgctggta aggcctgcct gcattctgca agccggccca ctggactgat ggttttcttg
     2641 gggacctctg tggggtgggg tggggtgggt ggtggtcttt tattttcctg atgacttgat
     2701 gttcattccc gcctctccaa tcacctgcca ggttccatgg ttgtaatttc tctgtgagaa
     2761 agtatgaaca ggccaggcct gctacctact ctgtcctcca cagtaccgtc ttggtcctcc
     2821 gttgtccctc tggctggggg gaaaaagcct tgttgggggg gggggagtgg catggctgct
     2881 ggcaggctgg caatgactgg agagaagcct caagtgagga ccgtcctcat tcatacatgc
     2941 tttccatacc catctgtctg gacgctgagc cagtgattcc ccaaggctcc cctggggcct
     3001 gaggtaaggg gccataagat agagcatccg tctatcagag agcagctggc gacttgccta
     3061 gcaacaatca ggttttgttt ttatttcttt ccttattttg gggtccactc tagtggtttt
     3121 gatggcctat gttgttttta ttgacccagt gggttcctct ggagttcaaa ggaacaaaat
     3181 gtccccaggg atcagaaccc atggccctct gaggcctggg tggtaaaggg cagaggactc
     3241 tggaaccata gtggtacccg agcctcctct ttatccctct gtttctctct aggtggttcc
     3301 attatctgtt ttgcacttag agccagtgta catagtaggc ttatgtatgg atagagagga
     3361 gagaggatgt gtttgttggt ggcttgtaac ttatcagaac ttggtggcct ttcttacgtg
     3421 tgtcttccat gatgtgggga ggggtttccc attggtccct gtgcaggtac ttggagggac
     3481 aattgtttgg gaaaagacac agcccctgtc ctcactattc tcttcccctt tctcaccaat
     3541 ccttctttta aaggttacag ggttcataca cttctggtta ttattattgt gtgttattga
     3601 tattattgtt ttggttttat tttattctat gttatttttt taaccaaagg ttatcagagc
     3661 cagatgggcc tggaccttag ctgctgtaaa gatttccgtt tctgtgaggg caggaggagg
     3721 gttgccctca tgggtccttg actgaggttg gggaccgttt ccatccagcg gtaaagcggt
     3781 agagtctggt agtcaggtgg gcagagcaga agccagccct tgatcgttct tcatggaggt
     3841 ggtgggctga catgtatctc tagcgttaag acaggaagca acagcgtaaa cgtttgaggg
     3901 gatggctgtg tacacagcta ctgtgtagtt gctggtctct ggtgttattt aactttccca
     3961 cctgtataca taggtcattt gtctggtgtg catgagaaaa gcagactcct ttgggttccc
     4021 tcctgctgac tttcaaagtc tgctttcccc tgggaggtgg agctctgagg caggaggatg
     4081 agtggagagg agcaagggtg tggtaggcat gtttcctggc ttggtctggg ctctgggcct
     4141 ggcctcctct tagtgtttgg tttgttcgtt tcgtagttcg ttgccagtgg gtcctgcttg
     4201 tgctcactgt gagcccacag cttgcccaga aagaccccac ccctcactgg ggccgcctct
     4261 cactggggca gcgcctgccc tgtctggacg aacttgtcca cccgtgtaaa catgtacata
     4321 tgttctcttg acttttctat gtctgagccc cgtgtcatat tgacacgggg gggctcaggg
     4381 cttctcagat gggctccccg tgttgcccct ggccatgctc ctagtttggg ggtcacatac
     4441 acaggcacag cagggagaca gcatcctttc aggttcctgg ttggtcgtga aacacacaca
     4501 cacacacaca cacacacaca cacacacaca cacacactcc actaagactc caaaggagaa
     4561 agatggggaa gaggttttgt cttcccgttg gcagtgtgtc tggaaggcat gaacactttg
     4621 gactctgttt taggggtaga actcagatgt cctatgaaga gtcaaaccac tttgacttta
     4681 gggtgggagg agaggggatg ggttaggggt aagatgaggt gtaacttaag ctaaatgtat
     4741 tctatttatg aagcaagaga ctgtattttt atgaaaggaa aaggttttta atctagggta
     4801 ggcagtcatg gtggcccagc attttgctgt ggataagata ccgccatgtt cattgactcc
     4861 ggtgtacaat caacagtaaa cccctctcct cagcttgccc tccgtcctca ctgaacgtcc
     4921 gcacacagct ggggcgggag tttgttgttt cttcttcccc ggccctcagc tccttagaag
     4981 tcttggaagg gagtggggag ggagggtgga atgcagaaaa ctgaggtggg ggagaggtag
     5041 gttctaatta gtcaccccat ctcccttctg gccagacctg ctcccattca gctgtgtggg
     5101 gagagtagga gggaggttct gtggggttgg gggacacagg acttcttagg ggcataggga
     5161 cttactatgt ctgaagtcgt caggcagctg gagcaggcat agaagggact caggacacta
     5221 agagctcagc cctgtctgtg tctactccag gccaaggtcg agcttggttg tggatgaagg
     5281 accaggactc tgtagggttt catcagacct gggtcctccc tctgggactg acctagtggg
     5341 aggagtggag acgggtctgg gcaaagccat acacactctg ggaaaagatt tccaggctca
     5401 gcgtggactg tgtgtgagtc tcaggcaaac tcctcacctt atgacttcct tcccaagctc
     5461 tcgaggacat gtgaattccc caccatgaca cgaccccttt ccacacactg tagcatctac
     5521 ctggttttta gtcccaccct acccaccgtt gctgtgtctg tcagctgggt ctgaaaatca
     5581 ccgggagggg tttgtactca tcaaagacta ctgaccctac cagaaaacca acctgtttac
     5641 tgtactgttg taaatactgt gccctttata tcgtgtatat tggcttcttt ggaataaagt
     5701 aaaatgtctt agcacaaaaa aaaaaaaaaa aa
//
