LOCUS       XM_006496140            3350 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus inducible T cell co-stimulator (Icos),
            transcript variant X3, mRNA.
ACCESSION   XM_006496140
VERSION     XM_006496140.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000067.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3350
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="1"
     gene            1..3350
                     /gene="Icos"
                     /gene_synonym="AILIM; CCLP; CRP-1; H4; Ly115"
                     /note="inducible T cell co-stimulator; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 10 ESTs, 32 long SRA reads, and 100% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:54167"
                     /db_xref="MGI:MGI:1858745"
     CDS             227..742
                     /gene="Icos"
                     /gene_synonym="AILIM; CCLP; CRP-1; H4; Ly115"
                     /codon_start=1
                     /product="inducible T-cell costimulator isoform X2"
                     /protein_id="XP_006496203.1"
                     /db_xref="GeneID:54167"
                     /db_xref="MGI:MGI:1858745"
                     /translation="MFSFHNGGVQISCKYPETVQQLKMRLFREREVLCELTKTKGSGN
                     AVSIKNPMLCLYHLSNNSVSFFLNNPDSSQGSYYFCSLSIFDPPPFQERNLSGGYLHI
                     YESQLCCQLKLWLPVGCAAFVVVLLFGCILIIWFSKKKYGSSVHDPNSEYMFMAAVNT
                     NKKSRLAGVTS"
ORIGIN      
        1 ttcctagcca tcccatatca ttctgtaggc aagaaagata gttgcactca ttttagcatt
       61 ttccagagtc cttggaatat tcttttttaa aaagaagatc gtgggaaaca tgatatcatt
      121 gaagggaact cacctggcag tgaagatgtc tctcttgatt gtctgtgatc tcttctagat
      181 gcgttaaccc acagaaagag aaatcaatgg ctcggccgat cataggatgt tttcatttca
      241 caatggaggt gtacagattt cttgtaaata ccctgagact gtccagcagt taaaaatgcg
      301 attgttcaga gagagagaag tcctctgcga actcaccaag accaagggaa gcggaaatgc
      361 ggtgtccatc aagaatccaa tgctctgtct atatcatctg tcaaacaaca gcgtctcttt
      421 tttcctaaac aacccagaca gctcccaggg aagctattac ttctgcagcc tgtccatttt
      481 tgacccacct ccttttcaag aaaggaacct tagtggagga tatttgcata tttatgaatc
      541 ccagctctgc tgccagctga agctctggct acccgtaggg tgtgcagctt tcgttgtggt
      601 actccttttt ggatgcatac ttatcatctg gttttcaaaa aagaaatacg gatccagtgt
      661 gcatgaccct aatagtgaat acatgttcat ggcggcagtc aacacaaaca aaaagtctag
      721 acttgcaggt gtgacctcat aagctggaac acccggaccc acagaggaaa cgcatggact
      781 agttcccctg aaacttgaat ggagaaattc ttctattttc tggaccacag ggcacctgac
      841 ttgatttaac tacagacaac attctgctgg tgttttgttt gtctggatca gtgactatca
      901 gtcattcaga atttcagcag actgccctgg gtttgctgag tccttttaag atgaacccct
      961 tcttaaggaa gacccagctc atatatattc aacaaacaga cctcactggg atagaatgcc
     1021 cctctctccg tgcctgattc tagctatgca ctggccagga aaacaaacat atctccagca
     1081 tttttttaca aaaaatgcca agggtatgaa tctgtaaagc acacaggcag ccaatggcca
     1141 ccatctgtcc tcatttttca gattccattt tctttccatg gagatcagca ttctttctag
     1201 aatcagacag tagagggaga tgcttcacaa cagaagcgct tgtgtttctg cgattttgat
     1261 gtatatactt tatcgaactc atgcattaga accaacatgc tctcttccaa ttcctagact
     1321 ctagctgatc actgcttcag ggcttagatg cctgctcttg ccttcaaatt tccccttaaa
     1381 gatatgtcca catgtctact tggcagcctg ctgccactcc aaataggaag ctcagcctac
     1441 attccctccc acccctgttg ctcaaaaaaa aaaaaaaaaa ttagtagata tgatgttccc
     1501 atattctccc tgccaaagta attttttcca gaaaagacat ctaaattcag ttaatatggt
     1561 ttactatgtt gatattagtg gtagtaaaca tttctcagaa acaaaagcaa attaattttg
     1621 ctgtggtgtt ttctactatt atctgtgttt ccatggtgct attaatcaca agcttagcta
     1681 tttttgtaga tcatattaaa gttgcaagca aggaaagcaa ccctctgtta atgggcaaac
     1741 attctcctgg ggtagaatga attatctatt tagcctgaaa gctgcggttt ctgggtggtg
     1801 gctgccagac tacagccaca ctttgctctc tctgggtttg acaggttgaa gtagtccccc
     1861 tggagcagca ctccaggcta cgctggagtc ccagagttgg gagatgcctg ggacaagctg
     1921 ctgctttggt ctctgggatc tgggaagtac agtagggcca agacagaatt ccctctccta
     1981 gaaactatgc agcctggaag tcagccctag cactttaaga tagccttctt tagaatatga
     2041 gttagttgga aggattctga agtgtaaaga gcatatgact gctctgagct ggaccatttt
     2101 ctctactttc ctgtctgtat gcctaagact tctggagcag ccaatgtgta tgcaacataa
     2161 aaaaacaaaa aacaaaaaaa ctcacaaact ttaagtaaaa tatggctgca tcatagtttt
     2221 aagttatagt tgcttactta cagtttactt taaaagtgag ctgtgcatca gtatatagtt
     2281 attacgttaa gcatgtgtaa tgctggctat gtacagtaca gtactgaacg tgtaatttga
     2341 atcaagtatg gtgttctctc tcttcagatg acccgggcag tctgactggc tttgttaggg
     2401 cattccccaa gttggacggt cctttctgtg tgagggtgaa ggtgctttac tctgttcctt
     2461 gaaggatccc cattcccaac acgaacacct aacaatgact tcttgaagaa caaaatttct
     2521 gtgaaataaa atctggctta aagaggagcc acttgctaaa agatgttagc aataatacaa
     2581 agtaaaggct aagcacttgt gtgcagcaat gggctataac cttgctgtgt tttctggggg
     2641 tgaagaagtg atgaccttag ctaccatatg caaattagcc cttgctctcc aatgaccttt
     2701 cgtgctacat aagatagttg ctccctttgt ctcgtttttc cccttttaga ctctgaaata
     2761 ttcacaagct tataaaagag tcagaagcac aggaaacagc acgctctgtg cctgagttag
     2821 tttctgcgtt gacctcctgg ccccacagaa tggtgcctat ttcctatgga aatgaagact
     2881 gcactcttga taacttgaca gtcaccaata tcagaaaatt aacactgata tgtcactacc
     2941 ctctagtctt tggtctgcat tcaagatctt cccctggctt ctaggatgta tgtaggagct
     3001 gtaagttctg ctggggatgt ccctttgtgt tcgattgacc tgtctcggga gtgttcttca
     3061 gtctagacag ttctcttcag cctgtagcct gggccctttt gcagatcaca caccattatt
     3121 ttgtagaatg ttccttttgt ggggggtcac gctgatgttt cttcatgaat gaaatgaggt
     3181 tactcgtctt tagcagaaat aacacagaag tggtgttgtg ccctataggg cggctcacat
     3241 tttggtttgc caagtaactg ccagtgtttg ttttcatctc ctgtcaagct tctccattgt
     3301 aaagggattc tgctcctgaa cagccaataa atatgctttg tgagagaata
//
