LOCUS       NM_001310598            8863 bp    mRNA    linear   ROD 05-JUN-2024
DEFINITION  Mus musculus hyccin PI4KA lipid kinase complex subunit 2 (Hycc2),
            transcript variant 1, mRNA.
ACCESSION   NM_001310598 XM_006495830
VERSION     NM_001310598.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 8863)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 8863)
  AUTHORS   Diez-Roux,G., Banfi,S., Sultan,M., Geffers,L., Anand,S., Rozado,D.,
            Magen,A., Canidio,E., Pagani,M., Peluso,I., Lin-Marq,N., Koch,M.,
            Bilio,M., Cantiello,I., Verde,R., De Masi,C., Bianchi,S.A.,
            Cicchini,J., Perroud,E., Mehmeti,S., Dagand,E., Schrinner,S.,
            Nurnberger,A., Schmidt,K., Metz,K., Zwingmann,C., Brieske,N.,
            Springer,C., Hernandez,A.M., Herzog,S., Grabbe,F., Sieverding,C.,
            Fischer,B., Schrader,K., Brockmeyer,M., Dettmer,S., Helbig,C.,
            Alunni,V., Battaini,M.A., Mura,C., Henrichsen,C.N.,
            Garcia-Lopez,R., Echevarria,D., Puelles,E., Garcia-Calero,E.,
            Kruse,S., Uhr,M., Kauck,C., Feng,G., Milyaev,N., Ong,C.K.,
            Kumar,L., Lam,M., Semple,C.A., Gyenesei,A., Mundlos,S., Radelof,U.,
            Lehrach,H., Sarmientos,P., Reymond,A., Davidson,D.R., Dolle,P.,
            Antonarakis,S.E., Yaspo,M.L., Martinez,S., Baldock,R.A., Eichele,G.
            and Ballabio,A.
  TITLE     A high-resolution anatomical atlas of the transcriptome in the
            mouse embryo
  JOURNAL   PLoS Biol 9 (1), e1000582 (2011)
   PUBMED   21267068
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC118698.7, AK168372.1 and CA556879.1.
            
            On Jul 16, 2015 this sequence version replaced XM_006495830.1.
            
            Transcript Variant: This variant (1) represents the longest
            transcript and encodes the longer isoform (a).
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK144602.1, SRR10223971.323.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-10                AC118698.7         152362-152371       c
            11-1085             AK168372.1         1-1075
            1086-1519           CA556879.1         1-434
            1520-8863           AC118698.7         88844-96187         c
FEATURES             Location/Qualifiers
     source          1..8863
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="1"
                     /map="1 29.12 cM"
     gene            1..8863
                     /gene="Hycc2"
                     /gene_synonym="C130065N10Rik; D1Ertd53e; D630010C10;
                     Fam126b"
                     /note="hyccin PI4KA lipid kinase complex subunit 2"
                     /db_xref="GeneID:213056"
                     /db_xref="MGI:MGI:1098784"
     exon            1..122
                     /gene="Hycc2"
                     /gene_synonym="C130065N10Rik; D1Ertd53e; D630010C10;
                     Fam126b"
                     /inference="alignment:Splign:2.1.0"
     exon            123..220
                     /gene="Hycc2"
                     /gene_synonym="C130065N10Rik; D1Ertd53e; D630010C10;
                     Fam126b"
                     /inference="alignment:Splign:2.1.0"
     exon            221..301
                     /gene="Hycc2"
                     /gene_synonym="C130065N10Rik; D1Ertd53e; D630010C10;
                     Fam126b"
                     /inference="alignment:Splign:2.1.0"
     exon            302..403
                     /gene="Hycc2"
                     /gene_synonym="C130065N10Rik; D1Ertd53e; D630010C10;
                     Fam126b"
                     /inference="alignment:Splign:2.1.0"
     exon            404..583
                     /gene="Hycc2"
                     /gene_synonym="C130065N10Rik; D1Ertd53e; D630010C10;
                     Fam126b"
                     /inference="alignment:Splign:2.1.0"
     exon            584..664
                     /gene="Hycc2"
                     /gene_synonym="C130065N10Rik; D1Ertd53e; D630010C10;
                     Fam126b"
                     /inference="alignment:Splign:2.1.0"
     exon            665..780
                     /gene="Hycc2"
                     /gene_synonym="C130065N10Rik; D1Ertd53e; D630010C10;
                     Fam126b"
                     /inference="alignment:Splign:2.1.0"
     exon            781..876
                     /gene="Hycc2"
                     /gene_synonym="C130065N10Rik; D1Ertd53e; D630010C10;
                     Fam126b"
                     /inference="alignment:Splign:2.1.0"
     exon            877..993
                     /gene="Hycc2"
                     /gene_synonym="C130065N10Rik; D1Ertd53e; D630010C10;
                     Fam126b"
                     /inference="alignment:Splign:2.1.0"
     exon            994..1081
                     /gene="Hycc2"
                     /gene_synonym="C130065N10Rik; D1Ertd53e; D630010C10;
                     Fam126b"
                     /inference="alignment:Splign:2.1.0"
     exon            1082..1241
                     /gene="Hycc2"
                     /gene_synonym="C130065N10Rik; D1Ertd53e; D630010C10;
                     Fam126b"
                     /inference="alignment:Splign:2.1.0"
     exon            1242..1409
                     /gene="Hycc2"
                     /gene_synonym="C130065N10Rik; D1Ertd53e; D630010C10;
                     Fam126b"
                     /inference="alignment:Splign:2.1.0"
     exon            1410..8863
                     /gene="Hycc2"
                     /gene_synonym="C130065N10Rik; D1Ertd53e; D630010C10;
                     Fam126b"
                     /inference="alignment:Splign:2.1.0"
     regulatory      8726..8731
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Hycc2"
                     /gene_synonym="C130065N10Rik; D1Ertd53e; D630010C10;
                     Fam126b"
                     /note="hexamer: AATAAA"
     polyA_site      8748
                     /gene="Hycc2"
                     /gene_synonym="C130065N10Rik; D1Ertd53e; D630010C10;
                     Fam126b"
                     /note="major polyA site"
     regulatory      8835..8840
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Hycc2"
                     /gene_synonym="C130065N10Rik; D1Ertd53e; D630010C10;
                     Fam126b"
                     /note="hexamer: AATACA"
     polyA_site      8863
                     /gene="Hycc2"
                     /gene_synonym="C130065N10Rik; D1Ertd53e; D630010C10;
                     Fam126b"
                     /note="major polyA site"
ORIGIN      
        1 gttattaagc gcgtgggccc actcaatgag aaggctggtt gttatgctgc agttggcagg
       61 ctgctgcggg aggcggtggc ggtggcggtg gcggtaggaa gcctgaggct gcggggtgac
      121 agaattggag aatatttaac tctcaacaaa tgaattccac acttgaactc tgccgcattc
      181 ctgtgccacc tcctccttta gaaaactgat cctaagacag agataaaaga agaatagaag
      241 gtaaaggaag atgctgggat cggaacgagc tgttgtggaa gaatggttat cagaattcaa
      301 ggcattacct gacactcaga ttaccagtta tgcagcaacc ttgcaccgga aaaaagccct
      361 tgtaccagct ctctataaag ttattcagga ttcaaacaat gagctcctgg agcctgtctg
      421 ccaccaactg tttgagctct atcgtagctc tgaagttcga cttaagaggt tcacactgca
      481 gttcctgccc gaattgattt gggtttattt gcgacttaca gttagtagag acaggcagag
      541 caatggctgc attgaagcac ttctcctagg aatttataat ttggaaattg ctgataaaga
      601 tggaaacaat aaagtgctgt ctttcactat cccttccttg tctaagcctt caatatacca
      661 tgaaccctca acaattggat ccatggcttt gacagaaggg gcattatgtc agcatgatct
      721 catcagggtt gtttacagtg atcttcatcc tcagagagaa acattcactg cacagaaccg
      781 gtttgaagtc ctaagttttc tcatgctgtg ctataattca gcgattgtgt atatgcctgc
      841 atcatcttac caatctcttt gtcggatggg ttccagggtt tgcgtgagtg ggtttccacg
      901 acaacatgag aaacagtgga aggagctctg tggtcgaatt gtattagatc ctgaatttat
      961 ggtgcaactt ctcacaggag tttactatgc catgtataat ggacagtggg accttggcca
     1021 ggaagtactt gatgacatca tttacagagc tcagctagaa ctcttttctc agccactctt
     1081 ggtggcaaat gccatgaaaa attcattacc atttgatgca cctgactctt cacaagaagg
     1141 ccagaaagta cttaaagtgg aagtcactcc aacagtgccg agaatttctc ggactgcaat
     1201 tacaacagct tcaattcgtc gtcatagatg gagaagagaa gatggctttg acttctcaaa
     1261 cgaggctgac tcgagtattc ctggctcccc gatccaacac ggctccactg acctagggat
     1321 caaacgtgtg caagaggggg aggtgctggt gcgcaggacc cctgagcatg gctcgccgga
     1381 gcccacctca gcagcagcca caacagaggg tgctgagggt ctaaatggcg gagaggagtc
     1441 cttaaacatg aatgatgcag atgaaggatt ttcatcaggg gcttctctta gcagccaacc
     1501 acatgggacc aaaccaccct cctcttctca gcggggaagc ttgcggaaag tagcaactgg
     1561 gcgttccgcc aaagacaaag aaacagcatt agccatcaaa tccaatgaga gccctcgaga
     1621 ttcagtagtt ggaaagcagt ttgtacaaca acaagcagat ctcagcatag attcagttga
     1681 gctgacaccg atgaagaaac acttgagcct gcctgcaggc caggtggtgc caaaaaccaa
     1741 tagtctgagt ctaatccgga cagccagtgc ttcctcaagt aaatcttttg actatgtaaa
     1801 tggcggtcaa gcaagtacca gcattggggt tggcactgag ggagttacta atctagcagc
     1861 tacaaatgct aatcgatatt caactatcag tctacaagaa gaccggctag gtcacgctgg
     1921 tgaaggtaaa gagctcctca gcccaggagc ccccttaacc aagcagtctc gatccccaag
     1981 tttcaatatg cagctaatat cccaggtgta gttctgatgc cccttgttct gctaaccttc
     2041 tacactgaac atttcattgt gcaagacacg tcatcccgca ttgtgaaaag atgtcactgt
     2101 catcagattt gacttagctt aggtatctca tactgtattt tgtatggaaa cagcaataag
     2161 gttttccttt cctttctttt aacctctcta cctattccct taaatgtgtt tgtgaagcag
     2221 tgtaaaacgt ttgccttttc catgccttcc tttctccttg ggtgatgtgc aatccatcgt
     2281 aggctgatcg gtcccatttc aacactgtga gactgaggag atgtcgagga aatggtgtat
     2341 aagatcccta tgaaatgatt ctttggcttt tgtttaaaaa caaaacgggt ttgttcacat
     2401 aatctatgaa ctatgaagat aactggatca tatgttttct ctctaaccag gagtgcctca
     2461 gagattctgc tatgactttg ggcttctctg agcctgtgca attttatatt cttgggaagc
     2521 atgggggaaa gtggtagact actgcaattt ttttattaaa atgaggctaa ctgcccccct
     2581 tactttatcc caaggacaca aatgtttaat tattgaggca tttaaatcaa tttgtgacca
     2641 cctccattgg agggtagggc tctaagttga ttgtgtgatt gataatgcac tttctcaatg
     2701 gctctctagt cattaacaac aggtcttccc tcctcccaca aggacttaag gacatttctg
     2761 cccttaaagt ttgaactaac aaatcagaga ctcaaagggg cgtgttctat ttcccaggaa
     2821 tgattgatat tatggtgctg gggctttgtt gggggaaggg tgttgtttgt ttagtttgtg
     2881 tgagattgta aatgaggtga agttataatt gttttctttc ttcctttcct ttgtgagttg
     2941 gtgatgactg aagtagacac tgtacgtctt caggtaaaga gagggatttc tcagtccact
     3001 ctctgagata tcagactaga gaaacccttt cagctgcttc ctagatgtac ctagattcag
     3061 tcagatatgg gatacagaaa cctaaagtcc tgagatcata tactccaagg aaacacatca
     3121 gggacaggtg attggttgaa aacactgatg cttctatgtg acacatttgt atagaacatt
     3181 tctaccagag ggtactgact tgattgctct acaaggacca cactgccttt gtgtttattg
     3241 cagtttgtgt atcttctgat tatctgcaaa gtttctcgtt tttataaaac gttgaaatca
     3301 tgccagtaaa ctagatgttg aatgtaaatg agtagcattt ggtaactgct aagaggctac
     3361 aaaaatgcat tattagttta aaggattttt gttgtgattt ggttggataa gactttctta
     3421 taatctcttc tgggtctcag gctttgtttg aaaaagaagg gaatatatta ggattttaaa
     3481 aatcagtatt gtgtgacttc aattgctatg aattacccat ctcaagaaca tcagttacac
     3541 acacccttgt acatgtagac attttatgta ttgtgaatga aaattacact gcctatatag
     3601 gaagcaagtg tcctcttaat tgacaaagtt gttttatctc tatttaccgt aaaatttgat
     3661 aaattaaata gccaggaaaa cgcctctctt ttttttttca tacataaacc accatttttg
     3721 gaggagttgt ctatctgtcc atctgtctgt ctgcattgtg ttagaataat ccttaattag
     3781 atttgatagt ttataacatt tttcagctcc cagcaaatag ggaactagaa cctcagctat
     3841 tatccacatc attgccaaac tttggagtaa aactaaaagc tgaaatgtga tctattgatt
     3901 gtttataata tgcgtatgat atgtgtatcc atttatcaca gacacatttt agccctattt
     3961 ctactaattt aactaagaga tatcaagtaa acttaaaaga aaaaagaatt gtaaaatagt
     4021 aaaataaaat gtttttgtaa cctactgaac agagaggctt tgtggtgcat aaggaaggta
     4081 tcagtcttag atggcaaagc acgcctactt catgctggag ctcacaggcg cacatgtaac
     4141 agactggcat ttaaaccaag cattttaaat aaagcacaag agaataccaa ataacttgaa
     4201 agtatagcat aaactgttgt aaatatgaga aaaaatcttt tgattagaaa catcataact
     4261 gaagagttgg tttaagaatc aggaatggtg gcatacacct tgaatcccag cactccagag
     4321 gcagaagcag gtgaatctct gagttcaagg ctggcctggt ctacagatgg agttctagga
     4381 cagccagggc tacacagaga aggcctgtct cagaaaagaa aaaaaaaaaa aaaaaaaggt
     4441 ttttttcatc tttttgttgg catgtgtaga ctttgtatat acatcccaag taatatttca
     4501 caatcctgaa acatttgctt catattcttt gggctataat ttggtctcaa tgaacaagtt
     4561 cttcatttac actttatagc aagggtctta gaatacattt tctgtgtaag ataacagtta
     4621 aaatgaaatg aattaaaatt agacaaacta ccaagttttc taatgatcat ttcaaccact
     4681 ttatgttacc atcattgaat ttaaaatggt ttttgttcag ttatacagca gctgttaaaa
     4741 atgtcataga aagttagaaa tgtccataat ttaaccttta ataacttccc tttaatattt
     4801 ctcagctttc atgaagcttc atcgcactag tagaaaaaaa gcatttaggg gaaaatattt
     4861 gtcttatatt gatgccatct gtactaggtt agattaagga ctacagtatc tgaaggtttt
     4921 aggagttttt ctatatgact ttcagttagt tttactggta agaaagctaa aatataaagt
     4981 aaaaagttaa cttacaagct agggagggaa gagttgtcat ttaaaatctt ggtcctttgc
     5041 caatgcccct tttttcgcag cccactgtgc tgtgcctgtt tgttgcagat caggtttctg
     5101 tgctagaaga gaccctagag ataatttggc tcttctctct gccatacaca cacattgcat
     5161 cctcaggaca ctgaggctca aaggaggatg tgaaataagg cccatgacta agaagcaggg
     5221 ccataatcaa accttgtctc tagtcacgtg catattgatg cctcattgcc tctggttatc
     5281 catactttag taaatgtgat atgaaacact tccatttctg ctatttcttt atgtttctgg
     5341 tctagtagct ggtgaacaca ttaagaaaag tattaattcc agaaggaaaa aaaaagtaaa
     5401 ataattaata cagatgggga tgtgttcaaa atgtaggtgt ctgtatagca cattattctt
     5461 ttctaattta tgccttgtga attttctacc acataacagt tatatgctgc catgttattt
     5521 gtattttggg ggatttgttt agatgcaaaa taaacccaat gaaatttcct tgatcagtgt
     5581 ttctaactat ttgaaagtga tctttaatca gccagttttc agtcatcaaa ggtacactgt
     5641 agaagattgc agagtaaaga taaactcaat tccattcatt tttcatctag agagaaattg
     5701 ttccttactc ggcttagagt agataagagc aatattcctc tacgttactg aaaaagaaga
     5761 atagtgagtg tgaaactttg aatccatgca cagtggtctc tgggtcattt atcacatata
     5821 gaccagataa aaacaactca agtgtggtag tcttagctac ataagctcag tatctccagc
     5881 tggtagtctc gattccattt agtagctttt acattccgtt gcatttgtct gcactgcttt
     5941 tgtgaatacc ttaatgcagt ggtgcgtttt tcctacctca cttaggaggc ttctttgggt
     6001 ccattgttta gtacttaagt tgttgacaat cagtgtctca tttaatccac tgtatgttta
     6061 tttataaata aaaatactag tttctgtctt tatgggtagg gtaacatact gtataaacac
     6121 tggcaagtgg gaccactcca tttctgaact tgaattacat tataaagtaa ggtttttctt
     6181 tttaatttaa tgaaaaagtt tagtattcca atgacatagt ttttcaattt aaagagatta
     6241 atatgtcatg ctagtggtca gaaattctac aacattagaa cgtagagcaa cttttctgca
     6301 ctgtggttat atcaagcatt aaaacaggag gcttttctct ctcaagcaaa atgaccactg
     6361 ccgttgcttc accaccaagt tgtgagatac ttactataat acttctaatt tccttaaagt
     6421 ggtttccaaa aataagtgac tgaaaactag ctactggcag cttaacctct taaaaataga
     6481 atatttacca gattatataa acatggaata tagtgtaaaa ataaaataat gagtcatcag
     6541 gttagtacaa ttttccatgc aaaggagatg agccaaattc tagtattgtt tatagtgtgt
     6601 gaatctaatg gatgcatcac actggtatga aactactaca taggaggcac agcccagcct
     6661 cttgtccttg tagatgcatc tcgtttaatc ctgacaacat aatgacaaca tttctctttt
     6721 ttcctccagt atttttgtaa tgttagccat ttgtcctatg aaaaataaaa tccaagacca
     6781 aataattcag gacacagtct cacagaaatg tcgggtcgtg tgaggtaact ggcggaatag
     6841 cataggagag tttctgtgtt ttgcttctga attttgagaa gatgggttct taatgtttac
     6901 aaattaaggc atagtcgtat gtctgatagt aattatacta ctacatttaa tatggtttta
     6961 ccaaaaaaaa aaaaaaaagg tagaattagg tgtattttaa ggtataagtc aacttttttt
     7021 taaaacttgt gtatctggaa gtagaaggtc ttttcattga caaagaaaaa tgaacttaat
     7081 cagataatct gccccatctg caagtttgct atgcagttgc tgtattttgg tgtaaacagc
     7141 tcagtgtcac tcatatcaga aaacatctta cgtcttcatc aatttacaaa atttaccaaa
     7201 gaaaatgttt ctgctgacaa atcattttta aggcatctat taaggaatgt accccccttt
     7261 aatgtagtga cttctttcta accctgaaag aaacaaatat taatacatta tgtgaactag
     7321 aaaacatata cagtaaatag ataatatcct atttttccct acatcaataa gatgtcagta
     7381 ctcaactgag agtaccaatt aaagaataag tcttaatttt attccttatg acatattttt
     7441 attaaagtta aggattttgc atatcagtat tggaataaat gggggaaact cctgaagttg
     7501 gtatattgta tattatgggt tgtttaggta aaattatagg aaaaattatt gaaaggtacc
     7561 cttcaatgga cagtgtcatc tatttctagt ataatactag ctatactgat atggttaggt
     7621 tagtttacat ttatgtctgt gttcactctt gactgctttt tgtctttgca ttaaaacatg
     7681 gttgggttaa aagaagataa aataactgct tctgaaatat gtaggccaaa aagatctaca
     7741 gtgtttaagc tgtctaatga tttcttaaat aacgatttat agttgttttt ttaactgcta
     7801 ttttaaacac gttctttaat tttttaatac cacattatag ttaataaata tttaagtggt
     7861 gtggtagtac atgcctttaa tcccagcact cagaggcaga gggaggcaga tctctgagtt
     7921 caaggccagg ctggtctata gagtgagttc caggactgcc aaggctacac agtgagaccc
     7981 tgtctcaaaa caacaaacaa aaaatgtatt gttcttggga agagaagatt ggccttcaaa
     8041 taatgactga taatggtttg tattactttt aattttatta tctgaataca gtgcaaagat
     8101 aatattccat ttgatgttaa aaatattagt atgaggttta tcatgttttt ttacactgaa
     8161 tctttttggt tctaaaaact aggctggcta acattcagtt taaaactgat tagatgaaac
     8221 tgttttagca gtgtacagat tttactacct tggctttatg tactgtgatt tctgtaacag
     8281 gcaaacagaa catcccattt tcattatttg tttctgtaaa aggacagata tatttgatca
     8341 gcctattgtt attgttaacc tgtatcaatt tatagcttgg tataaacttc ccaagtattg
     8401 agaggattct gctggtgaac attatgggta ggcatataag aagtatgatc tttattaaga
     8461 gatgtctttc aacttaggac tagtgaaaaa tctttttttg tttgtttcag agctgaagaa
     8521 aaaaaaaacc aaaatgcaca tttaagatct tatgtactgg tgcatgtgag ccattatctt
     8581 gtcttattga atggatcgat gctgttgatt gttgaaatgt gaaatgtgtc actgttgaac
     8641 ttgtaaatat ctgccagaga tgaaaaatat tttaatttat tgtaaataaa gatgtataaa
     8701 atttagtatc cgtctgcaat gcagaaataa aacatctcag atgttaaata ttgtgtctcc
     8761 tgagggatgt gtcattcccc ccttgatgta tctagctaca ttaagaatgt aaaatttctt
     8821 ttgtacagta taaaaataca gctttatttg gcttttaact gga
//
