LOCUS       XM_006525678            4307 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus 5 hydroxytryptamine (serotonin) receptor 4
            (Htr4), transcript variant X4, mRNA.
ACCESSION   XM_006525678
VERSION     XM_006525678.5
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000084.7) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_006525678.4.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4307
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="18"
     gene            1..4307
                     /gene="Htr4"
                     /gene_synonym="5-HT-4; 5-HT4; 5-HT<4L>; 5HTR4"
                     /note="5 hydroxytryptamine (serotonin) receptor 4; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 4 mRNAs, 13 long SRA reads, 15 Proteins, and 99%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 7 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:15562"
                     /db_xref="MGI:MGI:109246"
     CDS             515..1681
                     /gene="Htr4"
                     /gene_synonym="5-HT-4; 5-HT4; 5-HT<4L>; 5HTR4"
                     /codon_start=1
                     /product="5-hydroxytryptamine receptor 4 isoform X1"
                     /protein_id="XP_006525741.1"
                     /db_xref="GeneID:15562"
                     /db_xref="MGI:MGI:109246"
                     /translation="MDKLDANVSSNEGFRSVEKVVLLTFLAVVILMAILGNLLVMVAV
                     CRDRQLRKIKTNYFIVSLAFADLLVSVLVMPFGAIELVQDIWAYGEMFCLVRTSLDVL
                     LTTASIFHLCCISLDRYYAICCQPLVYRNKMTPLRIALMLGGCWVLPMFISFLPIMQG
                     WNNIGIVDVIEKRKFSHNSNSTWCVFMVNKPYAITCSVVAFYIPFLLMVLAYYRIYVT
                     AKEHAQQIQMLQRAGATSESRPQPADQHSTHRMRTETKAAKTLCVIMGCFCFCWAPFF
                     VTNIVDPFIDYTVPEQVWTAFLWLGYINSGLNPFLYAFLNKSFRRAFLIILCCDDERY
                     KRPPILGQTVPCSTTTINGSTHVLRDTVECGGQWESRCHLTATSPLVAAQPSDT"
ORIGIN      
        1 ctaggctggg gtctccagcc caagccagtg ccaggtgccc gccttcttgc cttttcccga
       61 gcgcgggggc tggagccggc atccaggggg cggcggcgag ggcgcaggca gtggcggggt
      121 gcgctactca gcgcagcagc agcggcagaa gcagggttct gcgctaaagg tggccgcagc
      181 aatctgctag ggtgccgctc tccctagcct tccgcagccg cgtggtgctg ggagtgtgcc
      241 aggagatcag aaccccagga gcccacgtgt gcaggtgggg atgccgagag gaggcggggc
      301 gggatgcccg ggttggaggg ggcttcaggg ttctgtactt ccgataccca ccagcctttg
      361 tcgcatggat gggctgtgtg ttagtgtggg tgggtggact gtctgggtag gacttgtctg
      421 cagcgtggga ccactgaagg ttgaaaggct gccctgcact tgtgtagggt cctgtgggca
      481 ctgaaatcca acgtcctcat gcccatttcc tgtaatggac aaacttgatg ctaatgtgag
      541 ttccaacgag ggtttcaggt ccgtggagaa ggtcgtgctg ctcacgttcc ttgcagtggt
      601 tatcctgatg gccatcttgg gcaacctgct ggtgatggtg gctgtgtgca gggacaggca
      661 gctcaggaaa ataaaaacca actatttcat tgtgtctctc gcctttgctg acctgctggt
      721 ttcggtgctg gtgatgccct ttggtgccat tgagctggtc caagacatct gggcttatgg
      781 ggagatgttc tgcctggtcc ggacctctct ggatgtccta cttaccacag catcgatctt
      841 tcacctgtgc tgtatttccc tggacaggta ttacgccatc tgctgccagc ctttggttta
      901 taggaacaag atgacccctc tacgcatcgc attaatgttg ggaggctgct gggtccttcc
      961 catgtttata tcttttctcc ccataatgca aggctggaac aacatcggca tagttgatgt
     1021 gatagagaaa aggaaattca gccacaactc taactccacg tggtgtgtct tcatggtcaa
     1081 caagccctat gctatcacct gctctgtggt ggccttctac atcccgtttc tcctcatggt
     1141 gctggcctat taccgaatct atgtcactgc taaggagcat gcccagcaga tacagatgtt
     1201 acaacgggca ggagccacct ctgaaagcag gccccagcca gctgaccagc acagcacaca
     1261 tcgcatgagg acagagacca aggcagccaa gactttatgt gtcatcatgg gctgcttctg
     1321 tttctgctgg gcccccttct ttgtcaccaa tattgtggac cctttcatag actacactgt
     1381 ccccgagcag gtgtggactg ctttcctctg gcttggctat atcaattcgg ggttgaaccc
     1441 ttttctctat gccttcttga ataagtcttt cagacgtgcc ttcctcatca tcctctgctg
     1501 tgatgatgag cgctacaaaa gaccccccat tctgggccag actgtcccct gttcaaccac
     1561 aaccattaat ggatccaccc atgtactaag ggatacagtg gaatgtggtg gccagtggga
     1621 gagtcggtgt cacctcacag caacttctcc tttggtggct gctcagccca gtgatactta
     1681 agcccctggg acaatgacct agaagacagc tgtggcttga aacgaagcca gtcctaagct
     1741 gctacttgtg tgtatgtggc tggccctggc actctcttct ccaaggcttt ccaagagcat
     1801 gaggcaatcc gcactggact ttcccgccag gaatccagca ggcggtattt gaggaagtca
     1861 ggggagagaa gggcttcctc cttcccttcg ctttctgttt ctcaagagtt cttcttcctg
     1921 gagtctccac tcttgcttgg tggtctctga agtctatgac ctagtctcct tgctgttttc
     1981 agtctgtcct gtaaacgttt actgtgttca attttctgtt tccaaacatg ccttctttga
     2041 agtgtcatct tacagatact gtcaaaacat gtgcatgtct ttatcacatt tcttgcttgg
     2101 tcacatctac catagctgtg ttcagacact ccaccatctt tcctttgctc tcttctctgc
     2161 tgggcccttg ttcactttct ttcctttgtc tgggtataga catgtatcct cttggccaac
     2221 cctgtgtcag ccacagaact ctgttttctt tttcctgtgt ttagtggtac cattctcttc
     2281 aggacaggct ccatccattt gcagtcggag acacagaaga gagatccgtc agtgggaaac
     2341 ggtctctgca gaaaccctgg aaggaagtca ggaccagatc tatctcatct gagagatttc
     2401 actttccttt cagcttagca cacctaaaga gccttaggca gggctggttc atcacatgca
     2461 tctattaaga gatgctcaga ctcttctatg agcttgtggt gaaacacaca gtagcagctc
     2521 aaaacctcag agtatggctt tgctgcttcc agtggacctt actgatggat gctcaccttg
     2581 tggagccttg tcactcttgc tatcttctag gtggagaagt ccagaaatgc tagtaatgag
     2641 aaaacagaat ctggctccaa gtcagaggac ccaaatgtaa gcccaggccc tgcttctgaa
     2701 acgctgtgag accatgaaca atgtctttcc atctatgaat ttcactctct acattgccaa
     2761 atttaacttg gagcagagga gtctttaaga tttctttcca tttctaagac aataggatgc
     2821 tgctatagcc tgccatctgc tacctcaaaa gctcatggcc tgcctacctg ttggctttgt
     2881 ttcaaaggaa tggccctcct gatttgggca tgctagactt ctgacttgat catctgtgca
     2941 aactggtgaa acacagtgaa cctggtgtct ttcactcaaa gccgagtcca tagtttgtct
     3001 caactacccg agagcaaagg ctctggtgat ggaagcacca cttctcagag ccaggtgagg
     3061 ttcagctttc gccttgactg tggtttgatt ccacctcagg actatgcact gcaccgttct
     3121 cttgagcttc tcgtggaatg gcacttgcta ttcctgtcag cattgacttt cattctggaa
     3181 ctgaacttgg caggaaatag actttggaat gaggaagaga agattgccaa aaccagtcaa
     3241 atgccaaaaa agaattctct gttatgtgaa gacttaaatt ttcttgagca cgagtcttag
     3301 caaaaggaag tagaccctga gagagaactc ctatatgctg ctggggaaag aaaaaaaaaa
     3361 gctctgtgct aagaaatatt gatgctgaga tggttcgtgt caaaactgat ccaatggagc
     3421 agttctcact ggaggcctct tctcgtcaac catgaagaga gttgaagcat caccttgcat
     3481 actgacgttg tagcgggatc agtccacttt gatttttaac tccttgcttc cttgccgtgg
     3541 ctaagctcag cactcatttg gaggcaagca gtgttttgaa gctggttctt tttaatacaa
     3601 gagatgagat gcaaccaact tgcctcgact gaccatatgc ccaccccgtc aacgaacatg
     3661 gtggtgggtg agtggctcag gcactgagtc aatgatggac tggctgagtg gatggaattg
     3721 aaagctggat ggtgtgagcc tcaggaacac ttctgagtac tctgaaacag ttgatgtgga
     3781 gagaaattat gtttatggag acattttgta aaatataaag gggcagctca tatgtttgtt
     3841 attattatgg gtattttgaa ttactgtgct ctcaagacca cttttttttt tcactaaaaa
     3901 atgaggtcag tttagagtga ggtttctgtg ttggaaacaa aacccagagc aacccttggg
     3961 taccaacatg cccctgggta ctcattcctt attaattgct tctcattggt tgcttagccc
     4021 acacatttat acatcaccct tcatttaaag ggatttcttt gttctcaaag gggtgaatag
     4081 agaaggagac cgtgggcaag ttttggtaag aatggctcta attttatatg taacttcata
     4141 gtttcataag ctaagttcat atacctgctt tttatataaa aatgtatctg aaaaaaattc
     4201 cctatacata aaactaattc ccaccttaca aataaaatat atacataata tatatttatt
     4261 taatatatat acatatacac tatatatgta catatataat atatatt
//
