LOCUS       XM_006538577            7419 bp    mRNA    linear   ROD 10-APR-2023
DEFINITION  PREDICTED: Mus musculus 5-hydroxytryptamine (serotonin) receptor 1D
            (Htr1d), transcript variant X2, mRNA.
ACCESSION   XM_006538577
VERSION     XM_006538577.4
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000070.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On May 10, 2023 this sequence was replaced by
            NM_001421107.1.
            
            On Sep 21, 2020 this sequence version replaced XM_006538577.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2023_04
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 04/05/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7419
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="4"
     gene            1..7419
                     /gene="Htr1d"
                     /gene_synonym="5-HT-1D; 5-HT1D; Gpcr14; Htr1db"
                     /note="5-hydroxytryptamine (serotonin) receptor 1D;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 mRNA, 1 EST, 47 long SRA reads, 18
                     Proteins, and 90% coverage of the annotated genomic
                     feature by RNAseq alignments, including 10 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:15552"
                     /db_xref="MGI:MGI:96276"
     CDS             908..2032
                     /gene="Htr1d"
                     /gene_synonym="5-HT-1D; 5-HT1D; Gpcr14; Htr1db"
                     /codon_start=1
                     /product="5-hydroxytryptamine receptor 1D isoform X1"
                     /protein_id="XP_006538640.1"
                     /db_xref="GeneID:15552"
                     /db_xref="MGI:MGI:96276"
                     /translation="MSPPNQSLEGLPQEASNRSLNVTGAWDPEVLQALRISLVVVLSV
                     ITLATVLSNAFVLTTILLTKKLHTPANYLIGSLATTDLLVSILVMPISIAYTTTRTWN
                     FGQILCDIWVSSDITCCTASILHLCVIALDRYWAITDALEYSKRRTAGHAAAMIAAVW
                     IISICISIPPLFWRQATAHEEMSDCLVNTSQISYTIYSTCGAFYIPSILLIILYGRIY
                     VAARSRILNPPSLYGKRFTTAQLITGSAGSSLCSLNPSLHESHTHTVGSPLFFNQVKI
                     KLADSILERKRISAARERKATKTLGIILGAFIICWLPFFVVSLVLPICRDSCWIHPAL
                     FDFFTWLGYLNSLINPVIYTVFNEDFRQAFQKVVHFRKIS"
ORIGIN      
        1 agaacgtgag ccccaagggg cgggggttgc acaatggttt taagcccagt gcatagccgg
       61 tgcagatata aagcagatcg ataaatactt gctaaattaa aggtaggggg cgggagactc
      121 agcttgtgag gaacccgcgg atggagtcta ggcacggtcc actttccccg gacagtccat
      181 tccttcctac agcctcagag cttccaagca cagctcggtg aaccagcggt gacccatttg
      241 ttttgcctcc ttctagctca tgcattcttt gagtcttggt cacgggaatg ttttgtctgg
      301 tcagacgcaa agccgtcagc aggacagaac caacgctgaa cactcatgat gtgtcggcag
      361 gggcctggga aaaggcagct cctggtggcg cacctctgaa tcagctgttt ctttttgtct
      421 ctggctttaa aagctctctg gaactgacct gatatccaga gtcttctcca agtatgaaca
      481 gggaaacgaa gttttcgtta aatatgttga cgtcttatgt tttgaaaagc agtagagtgt
      541 caaaggcgag aaccccagaa tcctgcccat cctcctgtga gaccttggta attatctaac
      601 aaacttatca tgtgtccact gggctggacc atctgccagg aggagtccca gaaacccaag
      661 atgccttggg gtttatctgc ttccggaagc agctagccgt ggttgtggtg ttcttccctg
      721 cccacgtctt gagttttagt ttttttgttt tgttttgttt tttgtttttt ttttttctgt
      781 gctccgtcct gatgtatacg gccttcacag ttgtgaagcc aaaggatgac cttgctctgt
      841 ggatcggact gcggtgaagg agcgagccgt gtgtgtagaa gtctgtggga agagacgagc
      901 actgagcatg tctcctccaa accagtccct agaaggcctt cctcaggagg cctccaacag
      961 atccctgaat gtgacagggg cttgggaccc agaggtcctg caggctctca gaatctcgct
     1021 cgtggtggtg ctgtccgtca tcacactggc cactgtcctc tccaatgcct tcgtccttac
     1081 caccattcta ctcaccaaga agctccacac cccagccaat tatctcattg gctccttggc
     1141 caccacggac ctcctggttt ctatcttggt catgcccatc agcatagcct acaccaccac
     1201 ccgcacctgg aactttggcc agatcctgtg tgacatctgg gtgtcttctg acatcacgtg
     1261 ctgcacggcc tccatcttgc atctctgtgt cattgctctg gacagatact gggccatcac
     1321 cgatgccctg gagtacagca agcgtcgaac cgcaggccac gcagcagcca tgattgcggc
     1381 cgtctggatc atctctattt gtatctccat ccctccactc ttctggcggc aggccacggc
     1441 tcacgaggag atgtccgact gcctggtgaa cacatctcag atttcttaca ccatctactc
     1501 gacctgtggc gccttctata tcccatccat cttgctcatt atcctgtatg gccgcatata
     1561 cgtggccgcc cggagtcgaa tcctgaaccc accctccctc tacgggaagc gcttcaccac
     1621 ggcacagctt atcacaggct ctgctggctc ttcgctctgc tcgctcaacc ccagcctcca
     1681 tgagagccac acacacacag ttggctcccc tctctttttc aaccaggtga aaatcaagct
     1741 tgctgatagc atcctagaac gcaagaggat ctctgcagcc cgagaaagga aagccactaa
     1801 gaccctgggc atcattctgg gggcctttat catctgctgg ttgcctttct ttgtagtatc
     1861 attggtcctc cccatctgca gggactcttg ttggatccac ccggccctct ttgacttctt
     1921 cacgtggcta ggttatttaa actctctcat taaccccgtc atctacactg tgttcaacga
     1981 agactttcga caagcgtttc agaaagtcgt ccatttccgg aagatctcat agtcggattt
     2041 gggggtgact cttgtttgcc tgttatgtcc tgtaacccca ctggggttgc ctttttaaaa
     2101 attactgcca tttctctgag acccgggttg atttgtgcta tcttgggtct ttggcttaaa
     2161 ttaatagatt tgttctgtgt ttgattgcca gcatcctcca gacccctgaa tcatctaaag
     2221 ctaggtcact gtgttgtgta aaggggagac aggactgaca gcatccctta acataatatt
     2281 ctcatggttc tctgggttgg aagaaatata actgtaggac ccaggtgaga aaatgtcttt
     2341 ctctctagca ggcttggagg gaaggccttc tggtctacct gggattttac agagtttttg
     2401 agaatgggtg tgattactga cttgaattaa aaaagaattt ggagttagaa aggaggggtt
     2461 gtcatctcct ggagctcatt gattagaaga taacacccag gaattgtttc cactgggtcc
     2521 tggctgtcca taaggaaagt ggtatcagtg gcccagcgta gatggagaga aagtcagaaa
     2581 gaggcagcag gagagaggta tacttgggac cagatcagct ctgcatcctt cattcttccc
     2641 tctgtctcta ttacgcaatg ttccgaagtt aaaacccacc atcctgccgc tcaagaagac
     2701 tgaccggtac gggacactcg aggctttgaa tgggacaccc tattctgcct tttttgattt
     2761 ttttcccctg aattattctt ttttacaacc cttgtccttg gagttcttaa gatgttgagc
     2821 gttaccaaat aaaccgcatg agacacagcg agcagtgaag tctttacaag attatgcatt
     2881 tgccgattgc cccgtatgtg tgcatatgat gagtgtgtaa ggctgtgtgg cttgccacac
     2941 ctctagtgtc agtcctttcc ttacaccttt tttgaagcag ggtctccctt gtctccaccc
     3001 ctgccttgta tattctaagc tagttagtcc acaagctcca gggatggtct ctgtttccac
     3061 ctcctatctc atcacagaag tgttaagaat gcagccacac aggcatgcac actcgcaggg
     3121 caatatccag ctttttacac aggttccagg gatggattct ctcctcccac tgctccccac
     3181 cccgcccctt ccacccggaa gtacagactt tcaacttaac tctggtttac aacatccact
     3241 gagcacccac ctcacaccag gacccgtgac cttcatttgc atgtcatttg catatgatta
     3301 tcataacatt tgcaaaaaac ttgagcctcc taattgtgga taaagtgaca attgaaaact
     3361 gagaaactgg gcctggtggc aagatggctc caagatacca ccaagcctga tgatgacctg
     3421 agcttgattc ccaggaccca catggtaggg agaactatct cccacaagct gtcttctgat
     3481 gcctgcacat gcacacattt atatatacac aaaaatagat ttcagagatg ttaggaaaaa
     3541 caaaaaaaca aaagcccctc aagagctggg gctggggtct cggaacgcag ctcagtgaga
     3601 gtgtgcttag ctagcatggt actgggtttg gctctcagca ctaaacaaaa gaaacaaaac
     3661 gagagaaacc gagaacggga tccttaggtt caaatgcagg cgctgtcagt tccttaactg
     3721 tgtgctcttt tctgaatccc tcatgttccc ggaagtataa agtggagatg ataattactg
     3781 tgtcataaag attaacacag cactggacac aaaagtccct accagccggg tgtggtggtg
     3841 cacgccttta atcccagtac ttgggaggta gaggcaggtg gatttctgag ttcgaggcca
     3901 gcctggtcta cagagtgagt tccgggacag ccagggctac atagagaaac cctgccttga
     3961 aaaacccaaa aaacaaaaca aaacaaaagt ccctacaatt tggagatcca agaattgatt
     4021 tactcaacaa aacaacagta gtagtagtaa cagatcctct aaagtacccc ggtacgctct
     4081 gtgtcccacc acccccaccc tccgccccct cgtgcactcc gtgtctcttt tctcttgttg
     4141 cgctccatgt ctcttttcac ttgttctctt cctccttgtc ttacaagtgt aagaaagaaa
     4201 tatggctgtg atcagaggag ggccttgtta agagacagct tcataacgat gagccctgga
     4261 gggatgacgt gctgaggtgt ggggagaaga caggggacgc agaggaaggc agggcacatg
     4321 gtcccaggta agacagcaac agagcttctg gtattccatg aggcctcagc cacagggaga
     4381 ggagtgagag ccagatgtca ggaaggctgg gaaggagaga agggcaaccc agaaatagaa
     4441 gattgttcta gatgtgttgt tacagttcag ttcctggact ccacgagctt gctgaccctg
     4501 gatccctggt ctcatgtcca ccgaatcaga taagaagagc tgggagtctg ttttgtgaca
     4561 agggttcact gtgttgttca gggtgacttt gaacctcagg ttggctcaag ccagggcggg
     4621 gtagcatata cctttaaatt ttcaatcctt gcactcagga gacagaggca ggcagatctc
     4681 tgtcatgagc ctggtctact cagtgagttt caggacagcc agagctacat aggaagactg
     4741 tctcaaggca aaagaaataa agcacacaca agagcaacca ctttcactcc ccacccctcc
     4801 cacataaaga aacctcttct tgctaaatac acatctactt tctgtcaggt aatttatttt
     4861 tatttttatt ttttgtcttt gagacagggt ttctctgtgt acccctggct ggcctagaac
     4921 tcacagagat ccgcctgcct ctgcctccca agggctggga ttaaaagcat gtgccaccat
     4981 caccaggcct ttaaatatat atatatacat atatatatat ttaatttgtg tgtgtgtgtg
     5041 tgtgtgtgtg tgtttgtaca agctacaggg catgtatgga ggtcagagaa caagttgtgg
     5101 gagacatttt tctccttcta ccatatgggt cctggggatg gtatttaagt ggtttcaggc
     5161 ttggtagcat gcaccttgac ccactgagcc atctcaattg ctctgccctg aagacttttc
     5221 gctgctgaac ttttcatata aagtggaatc ctgctgcttg ttgaagcgtg cctgtgaccc
     5281 aaactctcag gaagctgagg cagggggatt cctgtacctt tgaggctgag ttgggctatg
     5341 ttgcaatatg aggctagtcg aggctacaca gcaagaccat gtctcaaaca aaacaaaata
     5401 tcctggcatg gtatatatat gtcttcaatc cttgtactct agaaacagag gctggtgggt
     5461 ctctgtgact ttgagaccaa cttggtctat acagctagtt ctaggccagc caagactaca
     5521 agggtagacc ctgtaacaaa acagacaaac caaccaaaaa tcaagaccag aatcctactg
     5581 tgggtgatct tggaggctgc cttctttttt ttctttttcc aattttttat tagatatttt
     5641 ctttatatac atttcaaatg ctatcccgaa agttccctat accctcctcc ctccctgctc
     5701 ccctacccac tcactcccac tacttggccc tggcattccc ctgtactggg gcatataatg
     5761 tttgcatgac caaggggcct ctcttcccaa tgtggactcg acctgtcatg tgacagctgc
     5821 gtttagcctc ctgtaaacca accacggttt cccagagtgg ccacaaccct gtttcccttc
     5881 ccaggagcgc cacgtaaggg ttccactcgg tccacattct gtggctcctg taactatctg
     5941 tcttttttag tggcgccatt ctagtgggca tgacgtagtg tttccttcta ttctagtggg
     6001 catggcgtag tgtttccttg cagtgacgaa gctttgtaaa ggggccagag agtgactgtc
     6061 tccagctctc tgacacactc tggtctctgc cattgtgtca tgaacagaga catgtaaata
     6121 aacactctga gttgttgacc aacaggcggc aggcagctca aaggctagtt tgcagattct
     6181 atttaaaaag agtggctgcc ccatctgccc agttcatctc tgccccttct ttggcatcat
     6241 tataatcagc tttagaaata gccattattc actcaggagg cagagacagg cagatttctg
     6301 agttcaaggc cagcctggtc tacaaagtga gttccaggac agccagggct atacagagaa
     6361 accctgtctc aaaaaaaaaa aagaagaaga agaagaagaa gaagaagaag aagaagaaga
     6421 agaagaagaa gaagaagaag aagaagaaga agaagaagaa gaagaagaaa gggaagaaaa
     6481 gaaaaccaga aatagccatt attcttgtgt gtatgcccat gatgtgtgcg taggcaggcg
     6541 tgggcccgtg ctgtagcgtg catatgaagt cagtggacat ttttggaggc ttggtccccc
     6601 ttttccacct ttatatgggt tttcatggac tgaactcatg tctccaaggc tttggctttt
     6661 accaggttgg cttttatctt accaacttct aatatggact taaaaaaaag ttttacgccg
     6721 ggcggtggtg gcgcatgcct ttaatcctag cacttgggag gcagaggcag gtggatttct
     6781 gagttcgagg ccagcctggt ctacagagtg agttccagga cagccagggc tatacagaga
     6841 aaccctgtct caaaaaacaa aaacaaaaac aaaaacaaaa aagaaagttt tactttattc
     6901 tctgtgtatc agtgtgtgtg tatgagtgtt tgcatgtgtg tatgtatgta ccctatgtgt
     6961 gtgcagggct catggaggtc agaagaggca tcagaacccc tggaactggg atgatggaca
     7021 actctcagct gccatgtagg tgctgggaac tgaacccaga tcttttggaa gagcagcaag
     7081 tactcttaac ctaggagtca actcttcaga cgccatcatt agacttttga aacaggtctc
     7141 ctccctacat ggcttaggct ggacttgaac ttgagatcct cctgcctcag tcttcccagt
     7201 gctgggatta caaaccaggc tgccaagcct ggctcctggg tttatgtttt cattacgctt
     7261 gcttccagtg atcacactta agcattagtc cttgcttact gcctgtccct cccctctggt
     7321 gtcggcttga agacgatgtt cttatttgct gtgttctctc tttgaccagt atgccacagg
     7381 gtctgtgtat agtaggtgtt caataaattc atggttgaa
//
