LOCUS       XM_030242591            4477 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus HPS5, biogenesis of lysosomal organelles
            complex 2 subunit 2 (Hps5), transcript variant X4, mRNA.
ACCESSION   XM_030242591
VERSION     XM_030242591.2
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000073.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_030242591.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4477
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="7"
     gene            1..4477
                     /gene="Hps5"
                     /gene_synonym="haze; hz; maroon; mr; ru-2; ru2"
                     /note="HPS5, biogenesis of lysosomal organelles complex 2
                     subunit 2; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 mRNAs, 34 ESTs, 383 long SRA
                     reads, 1 Protein, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 34 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:246694"
                     /db_xref="MGI:MGI:2180307"
     CDS             905..3553
                     /gene="Hps5"
                     /gene_synonym="haze; hz; maroon; mr; ru-2; ru2"
                     /codon_start=1
                     /product="BLOC-2 complex member HPS5 isoform X2"
                     /protein_id="XP_030098451.1"
                     /db_xref="GeneID:246694"
                     /db_xref="MGI:MGI:2180307"
                     /translation="MWEVNFDGEVLSTHQFKKLLSMPPLPVITARSEPQYDHTVGSSQ
                     SLAFPKLLHLSEHCVLTWTEKGIYIFIPQNVQVLLWSEVKDIQDVAVYKNELFCLHFN
                     GKISHLSLLSVERCVERLLRRGLWDLAARTCCLFQNSIITSRARKTLTADKLEHLKSQ
                     LDLTACSELISQLDDLILRFEPLESACSSRRSSISSHESFSILDSGIYRIISSRRGSQ
                     SDEDSCSLHSQTFSEDERLKEFASHQEEEQPEQGCGANRNEESASHSPVMSEVDKSEA
                     FLPFSIALPFRSPSPLVSLQAVKDSVSSFVRKTTEKIGTLHGSPELKEPFESKDADRA
                     HEEEVSAVTCPLEEDTEEKEIHQPPKEDRLQELTAATAEAMTKLLDPLVLFEPKVLRM
                     VLLEWLSQLEKTFAMKDFPGISNTSSPTVKSNLGAHLLGETEKRVLDEESGEGRRVSL
                     VTEEAGGQITCDPVSNLSEPSADRFRVCSPYAITNSLQRDLAELTTLCLELNVLTSAM
                     ESVGGHVDRASQQLSPEILACRFLKKYFFLLDLKRAKESIKLTYDSPCVWDTFVEGLK
                     EMARSNPAYTELEEGDLPTGLQLLDGSVPSDSPLLIAFATRLYDRFGESALRACIKFY
                     PSISPSDIAQLCRHHPAQFLAYLDSLVKSRPEDQWPSFLEFLLQPESLRLEWLLLAVS
                     HDAPPSTSTVDDEGHPRPHSHLLSWGYSQLILLLIKLPADFTTKEKMTDICRSYGFWP
                     GYLTLCLELERRREAFTNIVYLNDISLMEGDNGWIPETLEEWKLLLHLLQTKSTRPAP
                     QESLNGSLSDGPAPINVENVALLLAKAMGPDRAWSLLQECGLALELSEKFTRTCDILR
                     IAERRQRALIQGMLEKCDRFLWSQQA"
ORIGIN      
        1 agctgtgatt gacgggagct ccttgtggtc agggacttgg tctgctgcgc atccttcatc
       61 tccagcagcg cctccagggc ctagaacacg agagaaattc tgtgtctctt acagaacaac
      121 cgtcatcttt ctggctaaat gacttttgtg ccagtgatac cagaagccta cagccatgtt
      181 cttgcagagt ttgagtcctt ggatccgtta ctcacagccc tgaggctgga ctccagtcgt
      241 ctgaggtgta ccagcatagc tgtgtctcgg aaatggttgg cgttaggcag cacaggagga
      301 ggactcaatc tcattcagaa agatggctgg aagcaaaggc tgtttctctc tcaccgggaa
      361 ggggcaatct ctcagattgc ctgctgctct catgatgatg attatgttgc tgtagctacc
      421 agtcaaggtc ttgtagttgt ttgggaatta aatcaagagc gtcgtgggaa gccagaacga
      481 attcatgtgt cctcagaaca caaaggccga aaagttactg ccctctgttg ggacacggct
      541 gttctgagag tctttgtcgg tgaccatgtg ggcaaagtat ctgccatcaa actcaacact
      601 ttgaaacaag caaaagcagc tgctgccttt gtgatgtttc ctgtgcagac agtactaaca
      661 gtggactcgt gtgtcgtcca gttggattac ttggatggaa gattacttgt gtcttcactg
      721 actcgatcct tcttgtgtga caccgagagg taaaccacct ttgtctttgt ttctggaaat
      781 tagggaaaag ttttggaaaa tcggaaataa ggaaagacat ggagaatatg gggcttgttt
      841 cttccccggg cggtgtgctg ggggccagca gcctgtgatc tactgcgccc gcccaggctc
      901 ccggatgtgg gaagtgaact ttgacgggga agtgctcagt acacaccagt tcaagaagct
      961 cctgtcaatg ccacccctcc ctgtgatcac tgcaagatca gagcctcagt atgatcacac
     1021 agttggatcc tcccagtctt tggcattccc caaactcttg catcttagtg aacactgtgt
     1081 gctgacttgg acagaaaagg gaatttatat tttcattcct cagaatgttc aagttcttct
     1141 ttggagtgaa gtcaaggata ttcaggatgt agctgtctac aagaatgaat tgttctgttt
     1201 acactttaat ggaaaaatct cacatctttc cctgttgtct gtggagcgct gtgtagaacg
     1261 cctgttaagg agaggcctgt gggacctggc tgctcgcaca tgctgtctct tccaaaattc
     1321 tattattacc agcagagcaa gaaaaacatt gactgcagat aagttggagc atttgaagtc
     1381 tcagctggac cttacagcct gcagtgaact aatttctcag ctggacgact tgatcttaag
     1441 gttcgagcct ttggagtcgg cgtgcagcag cagaagaagc tccatctcat cgcatgaaag
     1501 ttttagcatc ttggactctg gtatttatcg tatcatcagt agtagaagag gcagtcagtc
     1561 cgacgaagat tcttgttccc ttcacagcca gaccttctca gaagatgaaa ggcttaaaga
     1621 atttgcctca caccaggaag aggagcagcc agagcagggc tgtggtgcca ataggaatga
     1681 agagagtgct tcccacagtc cagtgatgtc tgaggtagat aagagtgaag cttttctgcc
     1741 cttcagcatt gcactgccat ttcgttctcc atctcccctc gtgtctcttc aggctgttaa
     1801 agacagtgtt tctagctttg tgcgtaaaac tactgagaag attggcaccc ttcacggaag
     1861 ccccgagctg aaagagcctt ttgaatccaa ggatgctgac cgagcacatg aagaggaagt
     1921 gagtgcagtc acctgccctc tggaggagga cactgaggag aaagaaattc atcaacctcc
     1981 taaagaagac aggcttcaag aactcacagc agcgacagca gaagcaatga ccaagttatt
     2041 ggaccctctg gttctgtttg agcccaaggt gctaagaatg gttttacttg agtggctttc
     2101 acagttagag aaaacatttg ccatgaaaga cttccccggc atttccaata ccagcagtcc
     2161 aaccgtgaaa tcaaacttgg gtgcacacct cctcggtgag acagaaaaga gagtattaga
     2221 tgaagagagt ggagaaggaa gaagggtctc tttagtcact gaagaagctg gaggtcagat
     2281 aacctgtgac cctgtaagca acctcagtga gccctcggct gaccgttttc gagtatgctc
     2341 tccatacgcc atcacaaaca gccttcagag ggacctggcg gaattgacaa cgttgtgctt
     2401 ggaactgaat gtgttgactt cagcaatgga aagcgtaggt gggcatgtgg accgggcttc
     2461 acagcagctc tctccagaaa tcctggcttg tcgtttccta aagaagtact tttttcttct
     2521 ggacttgaaa agagcaaagg agagtatcaa gctcacttac gacagccctt gcgtttggga
     2581 cacttttgtc gaaggactaa aagaaatggc aagatctaat cctgcctaca cggagctgga
     2641 agaaggagac ctgcccacgg ggttacagtt actggatggc tccgtccctt ctgatagtcc
     2701 cttgttgatt gcatttgcca cccggttgta tgatagattt ggggagtcag cccttcgagc
     2761 ttgcatcaag ttttatccgt ccatttcgcc ctccgacatc gcacagcttt gccgtcatca
     2821 tcctgctcag ttcttggcct atctagacag tctggtgaag tccaggccgg aagaccagtg
     2881 gccatccttc cttgagttcc ttctacaacc agagtcttta agacttgaat ggctgctttt
     2941 ggcagtgtcc catgatgctc caccaagcac aagtacagtg gatgatgaag ggcaccccag
     3001 gccccattca cacttgcttt cttggggtta tagtcagctg attcttcttc ttattaaact
     3061 tcctgcagac tttacaacca aagagaaaat gactgacatc tgtaggtctt acggtttctg
     3121 gcctggatat cttaccctct gtctggagct ggagaggagg agggaggcct tcaccaacat
     3181 tgtgtatctg aatgacataa gcctgatgga aggggacaat gggtggatcc ctgagacctt
     3241 ggaggaatgg aagcttctcc tacatctact acagaccaag agcacaaggc cagctcccca
     3301 ggagtcacta aacgggagcc tcagtgatgg gccagcccct atcaatgtgg agaatgtggc
     3361 cctcctgtta gctaaggcca tgggcccaga tcgggcctgg tcactgctac aggagtgtgg
     3421 tctggctctt gagttgtcag aaaagttcac cagaacctgt gatatcctga ggattgctga
     3481 gagaaggcag agagcgctga tacaaggcat gcttgagaag tgtgaccgct tcctctggtc
     3541 gcagcaggcc tagttgggga tctactttga ccaagtggaa tcctgctctc gaccctgcag
     3601 aggtctttgg cacagaaggg aagaggacac cccaaaacat gctgctgcag ctgctgatgt
     3661 ctcatcaccg cctggccagc ccttggcttt tgtggctctg tgacctcaga gtttctcaag
     3721 gaagcagtgg gctgaccttc actggaagca gcctggaggt gctccctgct gggtcggatt
     3781 ctttgtgtac accatgaatc agggaattgg tttctactga tgcagatctg tagggagcag
     3841 aagctttggt acaggaagac ataactaata ttgtaaactg gagttcaata ctttttctta
     3901 ctgagttagg acctggaaca atgacatcat tcctgttggc ttatgtaata aatactgaag
     3961 atccaaacta gagttttaaa taagactgcc catatctgag ttgagctcag tttcaagtat
     4021 ttttccagta tgtatttgat attctctaat ctaagcctat acgtactgac taatcctgga
     4081 aatatattat ctgtaagttt tggagagtgg gtgacccaaa cgctcacgcc ctctctttta
     4141 ttttttttat cgggttatgc actttttcct tcattccttt ctcttttttt gtcttaattt
     4201 ataaccctcg ctagcctgga acatgtaggt ataccaggct gtctcgactt taaatatcta
     4261 ctgcctctgc ctcctgaatg ttagaattaa gggtttgtgc catcacatat actttaaaat
     4321 tttattttaa aaagccatag caagagaaag ccacgcacta acataaatga taacaaatga
     4381 ttatattagc caagccatgt aactggattg tcatttatga agctttatgt agcctgttat
     4441 gttggtaata aatgatgaag gttttcttta aggagaa
//
