LOCUS       XM_006532289            3975 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus homeobox B3 (Hoxb3), transcript variant X7,
            mRNA.
ACCESSION   XM_006532289
VERSION     XM_006532289.5
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000077.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_006532289.4.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3975
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="11"
     gene            1..3975
                     /gene="Hoxb3"
                     /gene_synonym="Hox-2.7"
                     /note="homeobox B3; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 2 mRNAs, 15 ESTs, 7 long
                     SRA reads, 31 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 4 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:15410"
                     /db_xref="MGI:MGI:96184"
     CDS             1143..2444
                     /gene="Hoxb3"
                     /gene_synonym="Hox-2.7"
                     /codon_start=1
                     /product="homeobox protein Hox-B3 isoform X1"
                     /protein_id="XP_006532352.1"
                     /db_xref="GeneID:15410"
                     /db_xref="MGI:MGI:96184"
                     /translation="MQKATYYDNTAAALFGGYSSYPGSNGFGYDGPPQPPFQAATHLE
                     GDYQRSACSLQSLGNAAPHAKSKELNGSCMRPGLAPEPLPAPPGSPPPSAAPTSTTSN
                     SNNGGGPSKSGPPKCGAGSNSTLTKQIFPWMKESRQTSKLKNSSPGTAEGCGGGGGGG
                     GGGGGGGGGSSGGGGGGGGGGDKSPPGSAASKRARTAYTSAQLVELEKEFHFNRYLCR
                     PRRVEMANLLNLSERQIKIWFQNRRMKYKKDQKAKGLASSSGGPSPAGSPPQPMQSTA
                     GFMNALHSMTPSYDSPSPPAFGKGHQNAYALPSNYQPPLKGCGAPQKYPPTPASEYEP
                     HVLQANGGAYGTPTMQGSPVYVGGGGYADPLPPPAGPSLYGLNHLSHHPSGNLDYNGA
                     APMGPNQHHGPCDPHPTYTDLSSHHAPPQGRIQEAPKLTHL"
ORIGIN      
        1 tgcccctccc ccctttccct ccatttaccc ccaccttgtt cgtctttgaa ggacaatttt
       61 ccttttaatg gatttgtagc tagggacctt gtagactgtg gcctcgcagg agcctggagc
      121 aggccttcat cctcatcagg ctgaattcaa tactagtctg tgttctggat ctggacaatc
      181 aaagctgacc accccccccc cctacagagt ctgggccccg ccggcgcccc ctccccgtgg
      241 ggcaggggca ggcttccagc actttccgca ggggtcctgc tgcctcgaaa cctccgaggc
      301 acacgtaggg aggctgtttc tttggggtgt ggtacaagaa gaggtcctta accttcattg
      361 agtcgctttt ggttcagacc cttctaaaca aaccagagga ggcccttctc ctcattcccc
      421 ggctccccta ccctattggc tttattcttc tccattacac ggatgccctg tcggcctggt
      481 cgcagctacc ccagagctgc tgaggtagat aagactggga atgtgcaacg cggggcttct
      541 taggaatgcc tttctacttc cctttgtatc ctccctccca tccccctgcc ccagctatgg
      601 actaagattc atacttataa cttgtggagt ttggggtttg tttagctatg tttattcttg
      661 aaaggaaaga gtccgtatac ccctccccct cagtccacct cccggcttag ggcatggatt
      721 tctcctatcc taatgtttaa cacttttgac acgtatcacc cccatctttt cctcattgat
      781 cagtctccat tgtctgctga ttggaagctt aggacactaa cacctggaaa tatagaccgc
      841 aggctgccag gcaggcttca aggcttctct atccgttctt gtcagctctt gtttcaccac
      901 ttcaggaggg gagatttctc gcctgccgct cgcgctgggg ctcgatgtga atatatatta
      961 tgtctgcctg ttctcccctc gtcggtggct aaggtcagcc gcttggaaca gacccgagag
     1021 gaggggggca gaaaggggag gggggtccgg cgtgtcacgt gacccccagg ggtgccaatg
     1081 tccggtcgtg agggtatcag gcccttgcaa gttgccaccc actgcccggg cctcgcccag
     1141 cgatgcagaa agccacctac tacgacaaca ccgcagctgc gctcttcgga ggctactcct
     1201 cgtaccctgg cagcaatggt ttcggctacg acgggcctcc ccagcccccc tttcaggccg
     1261 ccacgcacct ggagggtgac taccagcgct cagcgtgttc tctgcagtcc ctgggcaacg
     1321 ccgccccaca tgccaagagc aaggagctca atggcagctg catgaggcca ggcctggccc
     1381 cagagcccct gcccgcacct ccgggctcac ccccacccag cgccgcacct accagtacca
     1441 ctagcaacag caataacggg ggtgggccca gcaaaagcgg cccccccaag tgcggtgccg
     1501 gctccaactc caccctcacc aaacagatat tcccctggat gaaagagtcg aggcaaacgt
     1561 ccaagctgaa aaacagctcc cccggcacag cagaaggttg tggtggtggc ggcggcggtg
     1621 gtggcggcgg cggcggcggt ggcggcggca gcagcggcgg gggcggcggc ggcggcgggg
     1681 gaggggacaa gagccccccg gggtcggccg cgtccaagcg ggcgcgcacg gcgtacacaa
     1741 gcgcgcagct ggtggagctg gagaaggagt tccacttcaa ccgttatttg tgccggccgc
     1801 gccgggtcga gatggccaat ctgctgaacc tcagcgagcg ccagatcaag atctggttcc
     1861 agaaccgtcg catgaagtac aagaaagacc agaaggccaa ggggctggcc tcgtcctctg
     1921 ggggtccctc tccggccgga agccccccgc agcccatgca gtccacggcc ggcttcatga
     1981 acgccttaca ctccatgacc cccagctacg acagcccgtc cccaccagct ttcggcaaag
     2041 gccaccagaa tgcctacgcg ctgccttcca actaccagcc ccctcttaag ggttgcggcg
     2101 ccccacagaa gtaccccccg accccggcgt cggagtatga gccccacgtc ctccaagcta
     2161 acgggggcgc ctacgggacg cccaccatgc agggcagtcc ggtgtatgtg ggcgggggtg
     2221 gctacgcgga tccgctgccg ccccctgccg gcccctccct ctacggcctc aatcaccttt
     2281 cccaccaccc ctcggggaac ctggactaca acggggcggc ccctatgggc cccaaccagc
     2341 atcatggacc ctgtgaccct caccccacgt acacagacct ctcctctcac cacgcaccgc
     2401 ctcagggtag aatccaagaa gcgcccaaac tgacacacct gtgatgggag gggcgggctg
     2461 gggagggagg ggtgaggtta agggccaggg agacggcgga cttgggggat gggcgcggtt
     2521 tagagtcctg aaagaggtgt gggatggggt tgtcgccagg tttccagaaa cagaacaggc
     2581 ctggggtgcc ttcccagctc ccaggccccc tccccgcccc caggggctgt cttttaagtc
     2641 ctccatgcct ggttccatct gtctgccaac aacccttgga aaggaatcca cagcaggttg
     2701 gagacgggac cacatcaatc ccagggttcc cagggttcca gcactaccaa gtgggaattt
     2761 cagattggag aggtgacgtg gagtcgggta gagggagcca agacaggcaa gcagggcaga
     2821 gaagcacatt caacacttaa tggcttggct atcagcaagc aatcaactta ccttgcatct
     2881 ctgtgggtaa tttccccaaa atcttgattt tttttgttct ccctttcagt ctccctgtga
     2941 aaaataagaa aatacattta aatcgaaggg cacaaagtat gtttctctcc tacttccctg
     3001 aagcttcaac tccccccatc ccccatctgt taggcttctt actatatcta tcatttacta
     3061 tggccctacg gttggttttc tgctctaagg acattcatat ctacacccca cccctattga
     3121 ttacaatttt cagagggctc agggatggta agatatcctg aaagtcagag ctgcctataa
     3181 tataaataaa tatatatttt ttttctttta aagaaaagtt aagaggctaa ggcaggcaag
     3241 ttgtcaggac tggaggcttg cccattctcc agtctctcag ctcccacccc atcccactcc
     3301 ctccactttc tttttacttc tgttcttctc ttgacttaac gtgaaaacag ggtatatttg
     3361 aacaaactgt ctgtcctggc aggtgctgca gctggacctg tggaccttgc tccagttcct
     3421 gacaggacag tcttgttgca cttggagttt acattttaat ggatattaaa aaaaaaaaaa
     3481 acaactgtga gagatgtctg ggcctgcaga aagtccagct tcgctcaaaa agcgtgtgtt
     3541 ctagtgaaca ttttcatata tatttattgg ttatagcctg ttaaaatatt ttcttttttg
     3601 tattatttat ccccctacat tatgtattta tatgagggac aaaaaaaaaa aagaaaaatg
     3661 tactttttta gtatttactt gttataaagg ttgttgtgtt tcctgtcatg taaaaccagc
     3721 tattttagtt tttattgtat tctagacaag agctgtagat ttatgttaaa ctcgtacata
     3781 tgaggaattg taattagttc taaaaggcat gaactcagct cctaaatgtc actgtatagt
     3841 cccgaatttg tagagataag aagttaattc tctcttggaa ctttctttgt tcttccgtag
     3901 ttattttttt cccccttagt taaaagagtt gtctgtcaaa acaattcttg aataaacttt
     3961 ctgttattaa tttta
//
