LOCUS       XM_006532283            3469 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus homeobox B3 (Hoxb3), transcript variant X1,
            mRNA.
ACCESSION   XM_006532283
VERSION     XM_006532283.5
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000077.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_006532283.4.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3469
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="11"
     gene            1..3469
                     /gene="Hoxb3"
                     /gene_synonym="Hox-2.7"
                     /note="homeobox B3; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 2 mRNAs, 17 ESTs, 7 long
                     SRA reads, 31 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 6 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:15410"
                     /db_xref="MGI:MGI:96184"
     CDS             637..1938
                     /gene="Hoxb3"
                     /gene_synonym="Hox-2.7"
                     /codon_start=1
                     /product="homeobox protein Hox-B3 isoform X1"
                     /protein_id="XP_006532346.1"
                     /db_xref="GeneID:15410"
                     /db_xref="MGI:MGI:96184"
                     /translation="MQKATYYDNTAAALFGGYSSYPGSNGFGYDGPPQPPFQAATHLE
                     GDYQRSACSLQSLGNAAPHAKSKELNGSCMRPGLAPEPLPAPPGSPPPSAAPTSTTSN
                     SNNGGGPSKSGPPKCGAGSNSTLTKQIFPWMKESRQTSKLKNSSPGTAEGCGGGGGGG
                     GGGGGGGGGSSGGGGGGGGGGDKSPPGSAASKRARTAYTSAQLVELEKEFHFNRYLCR
                     PRRVEMANLLNLSERQIKIWFQNRRMKYKKDQKAKGLASSSGGPSPAGSPPQPMQSTA
                     GFMNALHSMTPSYDSPSPPAFGKGHQNAYALPSNYQPPLKGCGAPQKYPPTPASEYEP
                     HVLQANGGAYGTPTMQGSPVYVGGGGYADPLPPPAGPSLYGLNHLSHHPSGNLDYNGA
                     APMGPNQHHGPCDPHPTYTDLSSHHAPPQGRIQEAPKLTHL"
ORIGIN      
        1 gatgtgcctg tgggagagag accttgctac tattccattg gtgcatttgg ggggggacct
       61 attttacagg aaaatttctc ctcctgaagg ggaaggtcat agtggtcctt tgagcctgaa
      121 atcgaaagac ccccttcccc ctcctggtca cgtgattcat taaataatta atgcctaggt
      181 tgcagaatag atatgtattc gtcaggaaaa tcgcaggctc ggtctccctg tttctgacgt
      241 ccaattcaac tgtcctttga aaaacaagcc tgtaccctga gaaaaaagag agagggagag
      301 agagagagag agagagaaag agagagagag agagagaaag aaagggaggc atcagtaaaa
      361 gatccccaca gctggaacca caccgcgggc tggggtactg aggggagatt tctcgcctgc
      421 cgctcgcgct ggggctcgat gtgaatatat attatgtctg cctgttctcc cctcgtcggt
      481 ggctaaggtc agccgcttgg aacagacccg agaggagggg ggcagaaagg ggaggggggt
      541 ccggcgtgtc acgtgacccc caggggtgcc aatgtccggt cgtgagggta tcaggccctt
      601 gcaagttgcc acccactgcc cgggcctcgc ccagcgatgc agaaagccac ctactacgac
      661 aacaccgcag ctgcgctctt cggaggctac tcctcgtacc ctggcagcaa tggtttcggc
      721 tacgacgggc ctccccagcc cccctttcag gccgccacgc acctggaggg tgactaccag
      781 cgctcagcgt gttctctgca gtccctgggc aacgccgccc cacatgccaa gagcaaggag
      841 ctcaatggca gctgcatgag gccaggcctg gccccagagc ccctgcccgc acctccgggc
      901 tcacccccac ccagcgccgc acctaccagt accactagca acagcaataa cgggggtggg
      961 cccagcaaaa gcggcccccc caagtgcggt gccggctcca actccaccct caccaaacag
     1021 atattcccct ggatgaaaga gtcgaggcaa acgtccaagc tgaaaaacag ctcccccggc
     1081 acagcagaag gttgtggtgg tggcggcggc ggtggtggcg gcggcggcgg cggtggcggc
     1141 ggcagcagcg gcgggggcgg cggcggcggc gggggagggg acaagagccc cccggggtcg
     1201 gccgcgtcca agcgggcgcg cacggcgtac acaagcgcgc agctggtgga gctggagaag
     1261 gagttccact tcaaccgtta tttgtgccgg ccgcgccggg tcgagatggc caatctgctg
     1321 aacctcagcg agcgccagat caagatctgg ttccagaacc gtcgcatgaa gtacaagaaa
     1381 gaccagaagg ccaaggggct ggcctcgtcc tctgggggtc cctctccggc cggaagcccc
     1441 ccgcagccca tgcagtccac ggccggcttc atgaacgcct tacactccat gacccccagc
     1501 tacgacagcc cgtccccacc agctttcggc aaaggccacc agaatgccta cgcgctgcct
     1561 tccaactacc agccccctct taagggttgc ggcgccccac agaagtaccc cccgaccccg
     1621 gcgtcggagt atgagcccca cgtcctccaa gctaacgggg gcgcctacgg gacgcccacc
     1681 atgcagggca gtccggtgta tgtgggcggg ggtggctacg cggatccgct gccgccccct
     1741 gccggcccct ccctctacgg cctcaatcac ctttcccacc acccctcggg gaacctggac
     1801 tacaacgggg cggcccctat gggccccaac cagcatcatg gaccctgtga ccctcacccc
     1861 acgtacacag acctctcctc tcaccacgca ccgcctcagg gtagaatcca agaagcgccc
     1921 aaactgacac acctgtgatg ggaggggcgg gctggggagg gaggggtgag gttaagggcc
     1981 agggagacgg cggacttggg ggatgggcgc ggtttagagt cctgaaagag gtgtgggatg
     2041 gggttgtcgc caggtttcca gaaacagaac aggcctgggg tgccttccca gctcccaggc
     2101 cccctccccg cccccagggg ctgtctttta agtcctccat gcctggttcc atctgtctgc
     2161 caacaaccct tggaaaggaa tccacagcag gttggagacg ggaccacatc aatcccaggg
     2221 ttcccagggt tccagcacta ccaagtggga atttcagatt ggagaggtga cgtggagtcg
     2281 ggtagaggga gccaagacag gcaagcaggg cagagaagca cattcaacac ttaatggctt
     2341 ggctatcagc aagcaatcaa cttaccttgc atctctgtgg gtaatttccc caaaatcttg
     2401 attttttttg ttctcccttt cagtctccct gtgaaaaata agaaaataca tttaaatcga
     2461 agggcacaaa gtatgtttct ctcctacttc cctgaagctt caactccccc catcccccat
     2521 ctgttaggct tcttactata tctatcattt actatggccc tacggttggt tttctgctct
     2581 aaggacattc atatctacac cccaccccta ttgattacaa ttttcagagg gctcagggat
     2641 ggtaagatat cctgaaagtc agagctgcct ataatataaa taaatatata ttttttttct
     2701 tttaaagaaa agttaagagg ctaaggcagg caagttgtca ggactggagg cttgcccatt
     2761 ctccagtctc tcagctccca ccccatccca ctccctccac tttcttttta cttctgttct
     2821 tctcttgact taacgtgaaa acagggtata tttgaacaaa ctgtctgtcc tggcaggtgc
     2881 tgcagctgga cctgtggacc ttgctccagt tcctgacagg acagtcttgt tgcacttgga
     2941 gtttacattt taatggatat taaaaaaaaa aaaaacaact gtgagagatg tctgggcctg
     3001 cagaaagtcc agcttcgctc aaaaagcgtg tgttctagtg aacattttca tatatattta
     3061 ttggttatag cctgttaaaa tattttcttt tttgtattat ttatccccct acattatgta
     3121 tttatatgag ggacaaaaaa aaaaaagaaa aatgtacttt tttagtattt acttgttata
     3181 aaggttgttg tgtttcctgt catgtaaaac cagctatttt agtttttatt gtattctaga
     3241 caagagctgt agatttatgt taaactcgta catatgagga attgtaatta gttctaaaag
     3301 gcatgaactc agctcctaaa tgtcactgta tagtcccgaa tttgtagaga taagaagtta
     3361 attctctctt ggaactttct ttgttcttcc gtagttattt ttttccccct tagttaaaag
     3421 agttgtctgt caaaacaatt cttgaataaa ctttctgtta ttaatttta
//
