LOCUS       NM_010454               2254 bp    mRNA    linear   ROD 28-JAN-2025
DEFINITION  Mus musculus homeobox A6 (Hoxa6), mRNA.
ACCESSION   NM_010454
VERSION     NM_010454.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2254)
  AUTHORS   Frenette,B., Gueno,J., Houde,N., Landry-Truchon,K., Giguere,A.,
            Ashok,T., Ryckman,A., Morton,B.R., Mansfield,J.H. and Jeannotte,L.
  TITLE     Loss of Hoxa5 function affects Hox gene expression in different
            biological contexts
  JOURNAL   Sci Rep 14 (1), 30903 (2024)
   PUBMED   39730789
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2254)
  AUTHORS   Kumar,S., Alam,S.S., Bareke,E., Beauchamp,M.C., Dong,Y., Chan,W.,
            Majewski,J. and Jerome-Majewska,L.A.
  TITLE     Sf3b4 regulates chromatin remodeler splicing and Hox expression
  JOURNAL   Differentiation 131, 59-73 (2023)
   PUBMED   37167859
REFERENCE   3  (bases 1 to 2254)
  AUTHORS   Catela,C., Chen,Y., Weng,Y., Wen,K. and Kratsios,P.
  TITLE     Control of spinal motor neuron terminal differentiation through
            sustained Hoxc8 gene activity
  JOURNAL   Elife 11, e70766 (2022)
   PUBMED   35315772
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 2254)
  AUTHORS   Yoshioka,K., Nagahisa,H., Miura,F., Araki,H., Kamei,Y.,
            Kitajima,Y., Seko,D., Nogami,J., Tsuchiya,Y., Okazaki,N.,
            Yonekura,A., Ohba,S., Sumita,Y., Chiba,K., Ito,K., Asahina,I.,
            Ogawa,Y., Ito,T., Ohkawa,Y. and Ono,Y.
  TITLE     Hoxa10 mediates positional memory to govern stem cell function in
            adult skeletal muscle
  JOURNAL   Sci Adv 7 (24) (2021)
   PUBMED   34108202
  REMARK    Publication Status: Online-Only
REFERENCE   5  (bases 1 to 2254)
  AUTHORS   Lopez-Delgado,A.C., Delgado,I., Cadenas,V., Sanchez-Cabo,F. and
            Torres,M.
  TITLE     Axial skeleton anterior-posterior patterning is regulated through
            feedback regulation between Meis transcription factors and retinoic
            acid
  JOURNAL   Development 148 (1) (2021)
   PUBMED   33298461
  REMARK    Publication Status: Online-Only
REFERENCE   6  (bases 1 to 2254)
  AUTHORS   Tkachuk,D.C., Kohler,S. and Cleary,M.L.
  TITLE     Involvement of a homolog of Drosophila trithorax by 11q23
            chromosomal translocations in acute leukemias
  JOURNAL   Cell 71 (4), 691-700 (1992)
   PUBMED   1423624
REFERENCE   7  (bases 1 to 2254)
  AUTHORS   Scott,M.P.
  TITLE     Vertebrate homeobox gene nomenclature
  JOURNAL   Cell 71 (4), 551-553 (1992)
   PUBMED   1358459
REFERENCE   8  (bases 1 to 2254)
  AUTHORS   Nazarali,A., Kim,Y. and Nirenberg,M.
  TITLE     Hox-1.11 and Hox-4.9 homeobox genes
  JOURNAL   Proc Natl Acad Sci U S A 89 (7), 2883-2887 (1992)
   PUBMED   1348361
REFERENCE   9  (bases 1 to 2254)
  AUTHORS   Singh,G., Kaur,S., Stock,J.L., Jenkins,N.A., Gilbert,D.J.,
            Copeland,N.G. and Potter,S.S.
  TITLE     Identification of 10 murine homeobox genes
  JOURNAL   Proc Natl Acad Sci U S A 88 (23), 10706-10710 (1991)
   PUBMED   1683707
REFERENCE   10 (bases 1 to 2254)
  AUTHORS   Gaunt,S.J., Coletta,P.L., Pravtcheva,D. and Sharpe,P.T.
  TITLE     Mouse Hox-3.4: homeobox sequence and embryonic expression patterns
            compared with other members of the Hox gene network
  JOURNAL   Development 109 (2), 329-339 (1990)
   PUBMED   1976088
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BC119105.1, BQ558488.1 and AC015583.34.
            
            On Jun 18, 2019 this sequence version replaced NM_010454.2.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC119105.1, ERR3363658.2578254.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-818               BC119105.1         51-868
            819-882             BQ558488.1         459-522
            883-2254            AC015583.34        107137-108508
FEATURES             Location/Qualifiers
     source          1..2254
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10090"
                     /chromosome="6"
                     /map="6 25.4 cM"
     gene            1..2254
                     /gene="Hoxa6"
                     /gene_synonym="Hox-1.2"
                     /note="homeobox A6"
                     /db_xref="GeneID:15403"
                     /db_xref="MGI:MGI:96178"
     exon            1..487
                     /gene="Hoxa6"
                     /gene_synonym="Hox-1.2"
                     /inference="alignment:Splign:2.1.0"
     exon            488..2254
                     /gene="Hoxa6"
                     /gene_synonym="Hox-1.2"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2229..2234
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Hoxa6"
                     /gene_synonym="Hox-1.2"
                     /note="hexamer: AATAAA"
     polyA_site      2254
                     /gene="Hoxa6"
                     /gene_synonym="Hox-1.2"
                     /note="major polyA site"
ORIGIN      
        1 agatgtacta atacacaaca aatcacagtc ctgcagaggg gcgcgcaaat gagttcctat
       61 tttgtgaatc ccactttccc tgggagcctg cccagcggcc aggactcctt cttgggccag
      121 ctgcccctct acccggccgg ctatgacgcg ctgaggccct tcccggcctc ttacggggcg
      181 tcgagtcttc cggacaagac atacacctca ccttgttttt accaacagtc caactcggtc
      241 ttggcctgca accgggcatc ctacgagtac ggggcctcat gtttctattc tgataaagac
      301 ctcagtggcg cctcaccctc gggcaataac aagcagaggg gccccgggga ctacctgcac
      361 ttttctcccg agcagcagta caaacctgac ggcagcgtgc agggcaaagc cctccatgag
      421 gaaggcaccg accggaagta cacaagccct gtttacccct ggatgcagcg gatgaattcc
      481 tgtgcgggtg ccgtgtatgg gagtcacggg cgcagaggcc gccagaccta cacgcgctac
      541 cagacactgg agcttgagaa ggaattccac ttcaaccgct acctgactcg gcggcgccgc
      601 atcgagatcg ctaacgcgct ttgcctcacc gagcgccaga tcaagatctg gttccagaat
      661 cggcgcatga agtggaaaaa ggaaaataaa ctcatcaact ccacgcaggc cagcggggaa
      721 gactctgagg ccaaagcggg cgagtagact ccagtgcagg gaccaggcca gcgttgtaac
      781 ctctattggc tttgccccct ggtgcccttg tctgctcccc aagttttatt ccagcctgct
      841 tctcccgcag cttagggaaa agcgtccaaa cctttgcaag cggctacgca tttacttatt
      901 acagaaaaca aacaaacaaa accccacaca cccaacgtca gctgtgggac agacgcactg
      961 tacacacaaa cacacaggtt ttctccccaa ggctgcccaa gccagcttgc gaggcccgcg
     1021 atgcacccag aattggccct gctgctgtgt tagcgcctct gcgctctgtg agccacagac
     1081 gcggggttgt gggggaagaa ggagccccag gcagtgccct gtttggtgcc tgggcttttc
     1141 cgccttggtc cctcgccatc aaattctaaa gggcatcgcc aaatcggctc tggctactga
     1201 aaagaaaggg tctacgagct gggccccagc cctgtcccgg cctctcagga tgcccctaat
     1261 caagaagcct gaggaacaaa gaggaacacc ccccttcccc gacagaacca aatctctcta
     1321 tcggcgcgta accgtcagtg ggagagtagc agcctcagcc gaggcaagcc aacctgggtt
     1381 tacagcttgg gagcgactag gctcccgcag gctcccagct cccgatttcc actctcagcc
     1441 tcatacagct cggacgcaat ccacctcgca gctttcagga cccaaagagg gggcccaaga
     1501 ccatgagagc cgcaagagtc ctggcttcca aacgtgccag ggacgcctga gatgccaggc
     1561 ctctagtaga gagagtctgc tctcttctca gctacatttg tgatttactt tcgtctttcg
     1621 gagcccagga aaataactac ggtgatacta gacacagcca cgaaatgatt ccattagttc
     1681 ccgcaattta ttcccagtgg tctaagcgag atcccaatag ctctacccac cgatcccagc
     1741 ttccaagcag cctcggaggc cgtttgggta tcagggccca atctctgggt tcaccaagaa
     1801 ccctgctacc tggggccggg ctgatcagag gaaccggacc agggatgaag atcttccagg
     1861 ctggataaat aaacaaatca gatagcaaac taatggcacg aaaaacatat ttgcacggag
     1921 gaaaaaaatg attctggtta tacgagtgta tggaatttga cctcgcctcg gagaaacact
     1981 acacaaaagc tgtctttaat agacgcctgt ggtttaagag cggcaggggc actgtccttc
     2041 atgcgttcac aaaaacagag ccgtaattgt ggctgctgct gtgggcagga tttatttctt
     2101 caattggcta aatcgtcttc ccttcctcga aggtgatatc tgtgttttca aaattcacag
     2161 ctgccggccg ggctggcaaa ccgaccccaa cctctacaca aaaataagag gggatacaaa
     2221 gccggggaaa taaagttgtt gtaaataatt ctaa
//
