LOCUS       XM_006509679            2582 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus homer scaffolding protein 3 (Homer3),
            transcript variant X3, mRNA.
ACCESSION   XM_006509679
VERSION     XM_006509679.3
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000074.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_006509679.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2582
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="8"
     gene            1..2582
                     /gene="Homer3"
                     /note="homer scaffolding protein 3; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 8
                     mRNAs, 34 ESTs, 546 long SRA reads, 7 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 26 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:26558"
                     /db_xref="MGI:MGI:1347359"
     CDS             291..1391
                     /gene="Homer3"
                     /codon_start=1
                     /product="homer protein homolog 3 isoform X2"
                     /protein_id="XP_006509742.1"
                     /db_xref="GeneID:26558"
                     /db_xref="MGI:MGI:1347359"
                     /translation="MSTAREQPIFSTRAHVFQIDPTTKRNWIPAGKHALTVSYFYDAT
                     RNVYRIISIGGAKAIINSTVTPNMTFTKTSQKFGQWADSRANTVYGLGFASEQQLTQF
                     AEKFQEVKEAARLAREKSQDGGEFTSTGLALASHQVPPSPLVSTNGPGEEKLFRSQSA
                     DTPGPTERERLKKMLSEGSVGEVQWEAEFFALQDSNQRLAGALREANAAATQWRQQLE
                     VQRAEAELLRQRVAELEAQVAVEPVRAGEKEATSQSVEQLEARVQTKDQEIQTLKNQS
                     TGTREAPDTAEREETQQQVQVGCRTSADLETRNAELEQQLRSMECNLEEARAERERAR
                     AEVGRAAQLLDVRLFELSELREGLARLAEAAP"
ORIGIN      
        1 ccccgcccaa ctcccccctc catgtccgcc ctcctcttct tccctctcgg ggtcccctcc
       61 ctcttccccg ccctccgtag ctggccagca gggggcgctg ggcagaggcg gggcggcgcg
      121 gggactggcc gcgatgggac cggaggcggc gcagacaaag gcgcgggcgg cgcggggcgc
      181 gcggagggcg cgggccggag gctgcagcga cgacgacgcg gggggacaaa caagtgactc
      241 ctgtcacccc tctgggtgcc ccttagaggc catccagccc aacctgacca atgtccacag
      301 ccagggaaca gccaatcttc agcacccggg cgcacgtatt ccagatcgac cccactacaa
      361 agcggaactg gatccccgcc ggcaagcacg cacttaccgt gtcctatttc tatgatgcaa
      421 cccgaaatgt gtaccgcatc atcagcatcg ggggtgccaa ggccatcatc aacagcactg
      481 tcactcccaa catgaccttc accaaaacct ctcagaagtt cgggcaatgg gcagacagtc
      541 gagccaacac tgtctacggc ctaggctttg cctctgaaca gcagctgacc cagtttgctg
      601 agaagtttca ggaggtgaaa gaagctgcca ggctggctcg agagaaatct caagatggtg
      661 gagaattcac tagtactggc ctggcccttg cctcccatca ggttcctcca agccccttgg
      721 tcagcaccaa tggtccaggc gaggaaaagc tgttccgtag ccagagtgcg gacacccctg
      781 gccccaccga gcgggaacgg ttgaagaaga tgctgtcaga aggctctgta ggggaggtcc
      841 agtgggaggc agagttcttc gcgcttcagg acagcaacca gaggttggcg ggagcccttc
      901 gggaggccaa cgcagcggcc actcagtgga ggcaacaact ggaggtccaa cgtgcagagg
      961 ctgaactctt gaggcagcgg gtagcagagc tggaggccca ggtggctgta gagccagtcc
     1021 gggcaggaga gaaagaagca accagccagt cggtggagca gctggaggct cgggtgcaga
     1081 ccaaggacca ggagatccag actttgaaga atcagagcac tggcacccga gaggctccag
     1141 acactgccga gcgcgaagag acacagcagc aagttcaggt tggctgcagg acctcagctg
     1201 acctggagac ccggaatgca gagctggagc agcagctgcg gtcgatggag tgcaacctgg
     1261 aggaggcgcg ggccgagcgg gagcgcgcac gggcggaggt gggccgggct gcgcagctgc
     1321 tggatgttcg gctgtttgag ctcagcgagc tgcgtgaagg cctggcacgc ctggcagagg
     1381 cagcacccta gtctgccatg gagtgtctgc ggcctcaagg cgccctggca ggggccaggg
     1441 gaccccagct gtctctgagc tttgcactgt gtagagtttt ctagaatcct tgggcagtgc
     1501 ttctacccag gttacatttc tacgtgtggc gttgctgtcc ctggctgctg ctgccctgcg
     1561 ccccagggac actgcgaggg aaggctgcac tagtcatccc catggggcaa cagaggcttt
     1621 gggatcctga gacctgaagg ccctgtactc atcccacccc attctcaagt cagactgaca
     1681 acttcaaaga gtgtttactg aagtcagggg ccaccagcac caggtttaca gctcagtcct
     1741 gagcctcagc ctgggctggc tcttggggcc gagatctggg aggacgcgac cgtcggacag
     1801 tgctccctgc tttctgccgc cgaagtgtct gccccacttt ctccttgaag cgtcggtttt
     1861 gttgcttgat cttggccagc tcagctttgc gtttggcctc caggtctggg tcctgcggaa
     1921 gggagctgag aatgtaactg ggcagcttcc cagggactgg ctcccccacc cctacccgac
     1981 cccaggtccc acccaccctt actggccaca ctcttatgcc tgtccctgca tacccatgcc
     2041 tccctatact accttcccct ccaggatcat ctgtttccgc ttgttgatct ctttcttttc
     2101 atcaaaatgc gaagcctcca gtttctaggg gtggggaggg gaacaggtca gtcaggcctg
     2161 gggcaggaag ccccgcccac ctcaccccac tccaccctac cctgacaggc tggccacact
     2221 tactatttcg cactcccttc gcactacgtt gacctgcgtg aggatttgta gaacctcagc
     2281 ctcctccacc accagctctg ccagctgctg ctctgcaggg acaggaaaca ctgagttggg
     2341 ctgggagtgc aaccagccct ctgcaccccc agctctggat gtctggatcc aaccaaatgt
     2401 ggactgatga tatttagaaa aagcaaaatg ctgccaagct tggcagcaca tgcttgtcat
     2461 cacagcactg ggaggttgga ggcaggggga tcactcgttc cagctgagtt ccaggccagc
     2521 tctgtagagc aagaatctgt ctcaaattaa tgactgaata aacaaatgaa caagtaaatg
     2581 aa
//
