LOCUS       NM_001405515            4164 bp    mRNA    linear   ROD 13-JUN-2024
DEFINITION  Mus musculus heterogeneous nuclear ribonucleoprotein D-like
            (Hnrnpdl), transcript variant 3, mRNA.
ACCESSION   NM_001405515 XM_006535074
VERSION     NM_001405515.1
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4164)
  AUTHORS   Sheehan,C.J., McMahon,J.J., Serdar,L.D. and Silver,D.L.
  TITLE     Dosage-dependent requirements of Magoh for cortical interneuron
            generation and survival
  JOURNAL   Development 147 (1) (2020)
   PUBMED   31857347
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4164)
  AUTHORS   Zhou,J., Wang,R., Zhang,J., Zhu,L., Liu,W., Lu,S., Chen,P., Li,H.,
            Yin,B., Yuan,J., Qiang,B., Shu,P. and Peng,X.
  TITLE     Conserved expression of ultra-conserved noncoding RNA in mammalian
            nervous system
  JOURNAL   Biochim Biophys Acta Gene Regul Mech 1860 (12), 1159-1168 (2017)
   PUBMED   29055695
REFERENCE   3  (bases 1 to 4164)
  AUTHORS   Distler,U., Schmeisser,M.J., Pelosi,A., Reim,D., Kuharev,J.,
            Weiczner,R., Baumgart,J., Boeckers,T.M., Nitsch,R., Vogt,J. and
            Tenzer,S.
  TITLE     In-depth protein profiling of the postsynaptic density from mouse
            hippocampus using data-independent acquisition proteomics
  JOURNAL   Proteomics 14 (21-22), 2607-2613 (2014)
   PUBMED   25211037
REFERENCE   4  (bases 1 to 4164)
  AUTHORS   Sansom,S.N., Griffiths,D.S., Faedo,A., Kleinjan,D.J., Ruan,Y.,
            Smith,J., van Heyningen,V., Rubenstein,J.L. and Livesey,F.J.
  TITLE     The level of the transcription factor Pax6 is essential for
            controlling the balance between neural stem cell self-renewal and
            neurogenesis
  JOURNAL   PLoS Genet 5 (6), e1000511 (2009)
   PUBMED   19521500
REFERENCE   5  (bases 1 to 4164)
  AUTHORS   Deneault,E., Cellot,S., Faubert,A., Laverdure,J.P., Frechette,M.,
            Chagraoui,J., Mayotte,N., Sauvageau,M., Ting,S.B. and Sauvageau,G.
  TITLE     A functional screen to identify novel effectors of hematopoietic
            stem cell activity
  JOURNAL   Cell 137 (2), 369-379 (2009)
   PUBMED   19379700
REFERENCE   6  (bases 1 to 4164)
  AUTHORS   Piao,Y., Ko,N.T., Lim,M.K. and Ko,M.S.
  TITLE     Construction of long-transcript enriched cDNA libraries from
            submicrogram amounts of total RNAs by a universal PCR amplification
            method
  JOURNAL   Genome Res 11 (9), 1553-1558 (2001)
   PUBMED   11544199
REFERENCE   7  (bases 1 to 4164)
  AUTHORS   Geschwind,D.H., Ou,J., Easterday,M.C., Dougherty,J.D.,
            Jackson,R.L., Chen,Z., Antoine,H., Terskikh,A., Weissman,I.L.,
            Nelson,S.F. and Kornblum,H.I.
  TITLE     A genetic analysis of neural progenitor differentiation
  JOURNAL   Neuron 29 (2), 325-339 (2001)
   PUBMED   11239426
REFERENCE   8  (bases 1 to 4164)
  AUTHORS   Akagi,T., Kamei,D., Tsuchiya,N., Nishina,Y., Horiguchi,H.,
            Matsui,M., Kamma,H. and Yamada,M.
  TITLE     Molecular characterization of a mouse heterogeneous nuclear
            ribonucleoprotein D-like protein JKTBP and its tissue-specific
            expression
  JOURNAL   Gene 245 (2), 267-273 (2000)
   PUBMED   10717477
REFERENCE   9  (bases 1 to 4164)
  AUTHORS   Ko,M.S., Threat,T.A., Wang,X., Horton,J.H., Cui,Y., Wang,X.,
            Pryor,E., Paris,J., Wells-Smith,J., Kitchen,J.R., Rowe,L.B.,
            Eppig,J., Satoh,T., Brant,L., Fujiwara,H., Yotsumoto,S. and
            Nakashima,H.
  TITLE     Genome-wide mapping of unselected transcripts from extraembryonic
            tissue of 7.5-day mouse embryos reveals enrichment in the t-complex
            and under-representation on the X chromosome
  JOURNAL   Hum Mol Genet 7 (12), 1967-1978 (1998)
   PUBMED   9811942
REFERENCE   10 (bases 1 to 4164)
  AUTHORS   Tsuchiya,N., Kamei,D., Takano,A., Matsui,T. and Yamada,M.
  TITLE     Cloning and characterization of a cDNA encoding a novel
            heterogeneous nuclear ribonucleoprotein-like protein and its
            expression in myeloid leukemia cells
  JOURNAL   J Biochem 123 (3), 499-507 (1998)
   PUBMED   9538234
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC124480.5.
            
            On Apr 27, 2022 this sequence version replaced XM_006535074.4.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR7652917.690809.1,
                                           SRR13861890.182319.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164131, SAMN01164138
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1160              AC124480.5         77238-78397
            1161-1329           AC124480.5         79136-79304
            1330-1491           AC124480.5         79388-79549
            1492-1623           AC124480.5         79901-80032
            1624-1738           AC124480.5         80141-80255
            1739-1909           AC124480.5         80466-80636
            1910-2001           AC124480.5         80922-81013
            2002-4164           AC124480.5         81378-83540
FEATURES             Location/Qualifiers
     source          1..4164
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="5"
                     /map="5 48.46 cM"
     gene            1..4164
                     /gene="Hnrnpdl"
                     /gene_synonym="D5Ertd650e; D5Wsu145e; hnRNP DL; hnRNP-DL;
                     Hnrnpdl1; Hnrpdl; JKTBP"
                     /note="heterogeneous nuclear ribonucleoprotein D-like"
                     /db_xref="GeneID:50926"
                     /db_xref="MGI:MGI:1355299"
     exon            1..1160
                     /gene="Hnrnpdl"
                     /gene_synonym="D5Ertd650e; D5Wsu145e; hnRNP DL; hnRNP-DL;
                     Hnrnpdl1; Hnrpdl; JKTBP"
                     /inference="alignment:Splign:2.1.0"
     CDS             718..1980
                     /gene="Hnrnpdl"
                     /gene_synonym="D5Ertd650e; D5Wsu145e; hnRNP DL; hnRNP-DL;
                     Hnrnpdl1; Hnrpdl; JKTBP"
                     /note="isoform 1 is encoded by transcript variant 3;
                     hnRPD-like protein; JKT41-binding protein; hnRNP D-like"
                     /codon_start=1
                     /product="heterogeneous nuclear ribonucleoprotein D-like
                     isoform 1"
                     /protein_id="NP_001392444.1"
                     /db_xref="GeneID:50926"
                     /db_xref="MGI:MGI:1355299"
                     /translation="MEVPPRLSHVPPPLFPSAPATLASRGLSHWRPRAPRQLAPLLPS
                     LASSASRQGARRSPRHVTAQQPSRLAGGAAIKGGRRRRPDLFRRHFKSSSIQRSAAAA
                     AGTRTARQHPLADGSATMEDMNEYSNIEEFAEGSKINASKNQQDDGKMFIGGLSWDTS
                     KKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLI
                     DPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGF
                     CFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVYRQQQQQQKGGRGAAAGGRGG
                     ARGRGRGQGQNWNQGFNNYYDQGYGNYNSAYGGDQNYSGYGGYDYTGYNYGNYGYGQG
                     YADYSGQQSTYGKASRGGGNHQNNYQPY"
     exon            1161..1329
                     /gene="Hnrnpdl"
                     /gene_synonym="D5Ertd650e; D5Wsu145e; hnRNP DL; hnRNP-DL;
                     Hnrnpdl1; Hnrpdl; JKTBP"
                     /inference="alignment:Splign:2.1.0"
     exon            1330..1491
                     /gene="Hnrnpdl"
                     /gene_synonym="D5Ertd650e; D5Wsu145e; hnRNP DL; hnRNP-DL;
                     Hnrnpdl1; Hnrpdl; JKTBP"
                     /inference="alignment:Splign:2.1.0"
     exon            1492..1623
                     /gene="Hnrnpdl"
                     /gene_synonym="D5Ertd650e; D5Wsu145e; hnRNP DL; hnRNP-DL;
                     Hnrnpdl1; Hnrpdl; JKTBP"
                     /inference="alignment:Splign:2.1.0"
     exon            1624..1738
                     /gene="Hnrnpdl"
                     /gene_synonym="D5Ertd650e; D5Wsu145e; hnRNP DL; hnRNP-DL;
                     Hnrnpdl1; Hnrpdl; JKTBP"
                     /inference="alignment:Splign:2.1.0"
     exon            1739..1909
                     /gene="Hnrnpdl"
                     /gene_synonym="D5Ertd650e; D5Wsu145e; hnRNP DL; hnRNP-DL;
                     Hnrnpdl1; Hnrpdl; JKTBP"
                     /inference="alignment:Splign:2.1.0"
     exon            1910..2001
                     /gene="Hnrnpdl"
                     /gene_synonym="D5Ertd650e; D5Wsu145e; hnRNP DL; hnRNP-DL;
                     Hnrnpdl1; Hnrpdl; JKTBP"
                     /inference="alignment:Splign:2.1.0"
     exon            2002..4164
                     /gene="Hnrnpdl"
                     /gene_synonym="D5Ertd650e; D5Wsu145e; hnRNP DL; hnRNP-DL;
                     Hnrnpdl1; Hnrpdl; JKTBP"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2995..3000
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Hnrnpdl"
                     /gene_synonym="D5Ertd650e; D5Wsu145e; hnRNP DL; hnRNP-DL;
                     Hnrnpdl1; Hnrpdl; JKTBP"
                     /note="hexamer: AATAAA"
     polyA_site      3020
                     /gene="Hnrnpdl"
                     /gene_synonym="D5Ertd650e; D5Wsu145e; hnRNP DL; hnRNP-DL;
                     Hnrnpdl1; Hnrpdl; JKTBP"
                     /note="major polyA site"
     regulatory      4142..4147
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Hnrnpdl"
                     /gene_synonym="D5Ertd650e; D5Wsu145e; hnRNP DL; hnRNP-DL;
                     Hnrnpdl1; Hnrpdl; JKTBP"
                     /note="hexamer: AATAAA"
     polyA_site      4164
                     /gene="Hnrnpdl"
                     /gene_synonym="D5Ertd650e; D5Wsu145e; hnRNP DL; hnRNP-DL;
                     Hnrnpdl1; Hnrpdl; JKTBP"
                     /note="major polyA site"
ORIGIN      
        1 acaaagaagc gagcacccaa gcctggagcc tggagcccga gcgcgggcac cagccctccg
       61 cagcctgctg gagcctgcgc gggaggcccg gggctcgtgc agacgggagt cccttgagtg
      121 gcgcgcccgg gacgtgagtg ccccttgtct tccccggcac ctgacccctt ccccgcccac
      181 cgcgtgcacc ttggcacagc ttcagtcatc cgagcaggcc ccgccctccg ccgcggcctc
      241 agccagcctc ggagaacgaa cgcacggaac ccgggctgca gagagagatc ctgcagccac
      301 ggcccctgag ccgacaccgc cccgaggcga cggcggaaaa gccgtccccg ccaggacgga
      361 ggcggtcatc gcgcacaggc tttctgctcg gctggttgca gccggcgcga ggacaaaaca
      421 cgcgtgcgcc gggagggcgg gcgagcgagc gggcggacgg gcgcgctgca gcttcagcaa
      481 gcggcgcggg gtgcacgccg cccttttgcc ggagtggccg ccgctgcagc agcagcagca
      541 gctctgcact aggggactga gggcgcagca agggactgag ccgaactgga cgcgcgacgc
      601 caacggctct caaggcaaga gggactgtgg ccctgccacg gcgccgctcg cgattcccgg
      661 tcccgcacgg ctgactctcc ccgcggcgcg acctcgctcc tcatccggag cgcggcgatg
      721 gaggtcccgc cccggctctc ccatgtgccg ccgccattgt tcccctccgc tcccgctact
      781 ttagcctccc gcggcctctc ccattggcgg ccacgggctc cccggcagct cgccccgctc
      841 ctcccttcgc tcgcttccag cgcctcccgc cagggggcgc gccggagccc gcgccacgtc
      901 accgcccagc agccctcccg attggcgggc ggggcggcta taaagggagg gcgcaggcgg
      961 cggccggatc tcttccgccg ccattttaaa tctagctcca tacaacgctc cgccgccgct
     1021 gccgccggga cccggactgc gcgccagcac cccctcgccg acggctccgc caccatggag
     1081 gacatgaatg agtacagcaa catagaggag ttcgcagagg gatccaagat caacgcgagc
     1141 aagaaccagc aggatgacgg taaaatgttt attggaggct tgagctggga tacaagcaag
     1201 aaagatctga ctgaatattt gtctcgattt ggggaagtgg tagactgcac aattaaaaca
     1261 gacccagtca cgggaagatc aagaggattt ggatttgtgc ttttcaaaga tgctgctagt
     1321 gtggataagg ttttggaact gaaagaacac aaactggatg gcaaattgat agaccccaaa
     1381 agggccaaag ctttaaaggg gaaagaaccc cctaaaaagg tctttgtggg tggattgagc
     1441 ccagatactt cagaagaaca aattaaagaa tattttggag cctttggaga gatagaaaat
     1501 attgagcttc ccatggatac aaaaacaaat gaaagaagag gattctgttt tatcacatac
     1561 acagacgaag agccagtaaa gaaactgtta gaaagcagat accatcaaat aggttctggg
     1621 aagtgcgaaa tcaaagttgc gcaacccaaa gaggtgtaca ggcagcagca gcaacaacag
     1681 aaaggaggca gaggggctgc agccggcgga agaggaggtg ctagggggcg tggaagaggt
     1741 cagggccaaa actggaacca aggatttaat aactattatg atcaaggata tggaaattat
     1801 aatagtgcct atggtggtga tcagaactat agtggctatg gcggctatga ttatactggg
     1861 tataactatg ggaactatgg atatggacag ggatatgcag actacagcgg tcagcagagc
     1921 acttacggca aggcgtcccg agggggcggc aatcaccaga acaattacca gccctactaa
     1981 aggaggacgc tgggagagca gcgggaactt cattgcaggc cgtgtgtcac cctgaccacg
     2041 tctatctctg ggggtcgcac gttgcgggca gagcgcaagg catacaccag aaaacgctgt
     2101 cctgtggtat ggtctcttcc aacttcatgt accagcgtaa agattaaagt ggaaaacttc
     2161 agactttggc ttctttttta atctttttgg agattaagtg tctaaactta acttaaatgg
     2221 ttttttacag gagttaaagt gcataaatgc ctttttacag cttaatcatt ttggtcttct
     2281 gtttagtgtt gtatttcaat tgtggagcct cattttaagt gttcattctt taagatttaa
     2341 tgcttgcttt ttctttttat agctaatagt gaaatctaca aaccaaaaca agaactttta
     2401 aatctgggat ataagttaaa gatcatatgc acaaagtaat tggctaccgt gttaccatta
     2461 taaacctacc tggaatttgt gttggtagca tccagttggc ttactaggga tgcttctgtt
     2521 ctggttggcc ctcacttgct agatgcagat cagggaagat tgcattcccg tgttctaaat
     2581 tcagtccatc ctgtgtcatt tggaactcga gtgagtttca gtgcccaaac tgtactttgc
     2641 tgatgaacat gcgtgtgatc tttaattgaa gtgaggactt aagcagtcca tgaaagtgga
     2701 cctttgcaca cttgtggggc tgcacacatc taatgggtgt ttcgtttttg ttttaggagg
     2761 tgtaaagaaa ccatcttaca ggacgacatt gaagattgct tgatcttctg ttgacctaag
     2821 atgattattt tgtaaaagac tttgtagtgt acatgacaca attgtgtcca actgtatata
     2881 gctgccaatt agttcctctg ttttactttg tcctttgcta cctgtgttat gatgactcaa
     2941 tgtggatttg tgttcataca aatttttatt tgtgtggttt catgttaaac ctcaaataaa
     3001 tgcttcctta tgtgattgtt ttcctgcgtc aggtactgca tagttctgtg gaaatgtaat
     3061 tttataaaga agcaataatc aagacagacg cagcttattt tgtagggggt attggtccac
     3121 aggaagaaac tggttgtagt atcccctggt ttctgtgggt gttactgtgc ttacagtcta
     3181 atgcttaatt tctctgttga taacttctac accttttgaa taatgtttcc tccctgggta
     3241 tctggagact gacactagtc tgttgtgatt ggtgacactt cctatcacat ggtgtgcttt
     3301 cagattatgg ttctaaggaa agcaccttgg tgtgctaggg ctgtacctca ctggcaagtg
     3361 tcctttgcct gagcacaagt gatgctcttg tttctatctc atcaccttag aaacggacct
     3421 gttggctacc acaaagcttt ttaattggct acctttgctc tgtgcttatc taacaaacca
     3481 tgtgtaattc acagatgact ttaaagagag tccatggttt gtctgttaga ggtaaatgca
     3541 ggggggaaac tggtggccag ggtttcatcc attctatctg caattatcca ctaaggtcag
     3601 tgcagtgggc tgaggtttta ggaaaattag cagtagtgaa tccatcccac catagtacac
     3661 aagctaaata gatttaagca gtttgctatg caggcagagg aagggagttg tggaaagtca
     3721 catggtgtat cttttggtgc attaaaaact taaaagattt aagtaataaa ggctttgagc
     3781 ttttccataa atgtttggct tagaggtctc tccacggttc cacaaaagct tctgggttgg
     3841 ggtacatgtt tagagtactt ggtcttagac cagtgtaagc tttttatact gatatctttt
     3901 ttaaatgcct acaactttgt tccaatgata tttgtacttg ctaggctgtc aagttaccat
     3961 gccttggcct cattttcttc tggccaggta ccattgttgg ctattaaaaa gaactgtttc
     4021 aacttgcaac cagagaatag gaggtcattt cacatactgt tagtaggtat agtatccaag
     4081 aaagaaatac aattaggtga caagttggca ttgaagattg tcatttcccc tgatcaaaat
     4141 gaataaagtc tttttaaaat aaaa
//
