LOCUS       XM_006532276            3852 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus hyaluronan mediated motility receptor
            (RHAMM) (Hmmr), transcript variant X2, mRNA.
ACCESSION   XM_006532276
VERSION     XM_006532276.5
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000077.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_006532276.4.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3852
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="11"
     gene            1..3852
                     /gene="Hmmr"
                     /gene_synonym="AA386826; CD168; Rhamm"
                     /note="hyaluronan mediated motility receptor (RHAMM);
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 mRNA, 28 ESTs, 371 long SRA reads, 2
                     Proteins, and 85% coverage of the annotated genomic
                     feature by RNAseq alignments, including 20 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:15366"
                     /db_xref="MGI:MGI:104667"
     CDS             87..2408
                     /gene="Hmmr"
                     /gene_synonym="AA386826; CD168; Rhamm"
                     /codon_start=1
                     /product="hyaluronan mediated motility receptor isoform
                     X2"
                     /protein_id="XP_006532339.1"
                     /db_xref="GeneID:15366"
                     /db_xref="MGI:MGI:104667"
                     /translation="MSFPKAPLKRFNDPSGCAPSPGAYDVKTSEATKGPVSFQKSQRF
                     KNQRESQQNLNIDKDTTLLASAKKAKKSVSKKDSQKNDKDVKRLEKEIRALLQERGTQ
                     DKRIQDMESELEKTEAKLNAAVREKTSLSASNASLEKRLTELTRANELLKAKFSEDGH
                     QKNMRALSLELMKLRNKRETKMRSMMVKQEGMELKLQATQKDLTESKGKIVQLEGKLV
                     SIEKEKIDEKCETEKLLEYIQEISCASDQVEKCKVDIAQLEEDLKEKDREILSLKQSL
                     EENITFSKQIEDLTVKCQLLETERDNLVSKDRERAETLSAEMQILTERLALERQEYEK
                     LQQKELQSQSLLQQEKELSARLQQQLCSFQEEMTSEKNVFKEELKLALAELDAVQQKE
                     EQSERLVKQLEEETKSTAEQLTRLDNLLREKEVELEKHIAAHAQAILIAQEKYNDTAQ
                     SLRDVTAQLESVQEKYNDTAQSLRDVTAQLESEQEKYNDTAQSLRDVTAQLESEQEKY
                     NDTAQSLRDVTAQLESYKSSTLKEIEDLKLENLTLQEKVAMAEKSVEDVQQQILTAES
                     TNQEYARMVQDLQNRSTLKEEEIKEITSSFLEKITDLKNQLRQQDEDFRKQLEEKGKR
                     TAEKENVMTELTMEINKWRLLYEELYEKTKPFQQQLDAFEAEKQALLNEHGATQEQLN
                     KIRDSYAQLLGHQNLKQKIKHVVKLKDENSQLKSEVSKLRSQLVKRKQNELRLQGELD
                     KALGIRHFDPSKAFCHASKENFTPLKEGNPNCC"
ORIGIN      
        1 ggaaagttga ggtaaatttg aattcaggcg agctgacagt ttgctggggc gtttgattgc
       61 tgtctcatct ggacccaggc gtcagaatgt cctttcctaa ggcgcccctg aagagattca
      121 atgacccttc gggttgtgct ccatctccgg gtgcttatga tgttaaaact tcagaagcaa
      181 ctaaaggacc agtgtctttt cagaaatcac aaagatttaa aaaccaaaga gagtctcaac
      241 aaaatcttaa cattgacaaa gatacaacct tgcttgcttc ggctaaaaaa gcaaagaagt
      301 ctgtgtcaaa gaaggactct cagaagaatg ataaagatgt gaagagatta gaaaaagaga
      361 ttcgcgctct tttgcaagag cgagggactc aggacaaacg gatccaggac atggaatctg
      421 aattggagaa gacagaagca aagctcaatg cagcagtcag agagaaaaca tctctctctg
      481 cgagtaatgc ttcactggaa aaacggctta ctgaattaac cagagccaac gagctactaa
      541 aggctaagtt ttctgaagat ggtcaccaaa agaatatgag agctctaagc ctggaattga
      601 tgaaactcag aaataagaga gagacaaaga tgaggagtat gatggtcaaa caggaaggca
      661 tggagctgaa gctgcaggcc actcagaagg acctcacgga gtctaaggga aaaatagtcc
      721 agctggaggg aaagcttgtt tcaatagaga aagaaaagat cgatgaaaaa tgtgaaacag
      781 aaaaactctt agaatacatc caagaaatta gctgtgcatc tgatcaagtg gaaaaatgca
      841 aagtagatat tgcccagtta gaagaagatt tgaaagagaa ggatcgtgag attttaagtc
      901 ttaagcagtc tcttgaggaa aacattacat tttctaagca aatagaagac ctgactgtta
      961 aatgccagct acttgaaaca gaaagagaca accttgtcag caaggataga gaaagggctg
     1021 aaactctcag tgctgagatg cagatcctga cagagaggct ggctctggaa aggcaagaat
     1081 atgaaaagct gcaacaaaaa gaattgcaaa gccagtcact tctgcagcaa gagaaggaac
     1141 tgtctgctcg tctgcagcag cagctctgct ctttccaaga ggaaatgact tctgagaaga
     1201 acgtctttaa agaagagcta aagctcgccc tggctgagtt ggatgcggtc cagcagaagg
     1261 aggagcagag tgaaaggctg gttaaacagc tggaagagga aacgaagtca actgcagaac
     1321 aactgacgcg gctggacaac ctgctgagag agaaagaagt tgaactggag aaacatattg
     1381 ctgctcacgc ccaagccatc ttgattgcac aagagaagta taatgacaca gcacagagtc
     1441 tgagggacgt cactgctcag ttggaaagtg tgcaagagaa gtataatgac acagcacaga
     1501 gtctgaggga cgtcactgct cagttggaaa gtgagcaaga gaagtacaat gacacagcac
     1561 agagtctgag ggacgtcact gctcagttgg aaagtgagca agagaagtac aatgacacag
     1621 cacagagtct gagggacgtc actgctcagt tggaaagcta taagtcatca acacttaaag
     1681 aaatagaaga tcttaaactg gagaatttga ctctacaaga aaaagtagct atggctgaaa
     1741 aaagtgtaga agatgttcaa cagcagatat tgacagctga gagcacaaat caagaatatg
     1801 caaggatggt tcaagatttg cagaacagat caaccttaaa agaagaagaa attaaagaaa
     1861 tcacatcttc atttcttgag aaaataactg atttgaaaaa tcaactcaga caacaagatg
     1921 aagactttag gaagcagctg gaagagaaag gaaaaagaac agcagagaaa gaaaatgtaa
     1981 tgacagaatt aaccatggaa attaataaat ggcgtctcct atatgaagaa ctatatgaaa
     2041 aaactaaacc ttttcagcaa caactggatg cctttgaagc cgagaaacag gcattgttga
     2101 atgaacatgg tgcaactcag gagcagctaa ataaaatcag agactcctat gcacagctac
     2161 ttggtcacca gaacctaaag caaaaaatca aacatgttgt gaaattgaaa gatgaaaata
     2221 gccaactcaa atcggaggtg tcaaaactcc gatctcagct tgttaaaagg aaacaaaatg
     2281 agctcagact tcagggagaa ttagataaag ctctgggcat cagacacttt gacccttcca
     2341 aggctttttg tcatgcatct aaggagaatt ttactccatt aaaagaaggc aacccaaact
     2401 gctgctgagt tcagatgcaa cttcaagaat catggaagta tacgtctgaa atacttgttg
     2461 aagattattt tcttcattgt tcttgatatt atgtttatag tatatattat ataatgtatt
     2521 taatttctac tgcctagtct taggtatatg aaacggtaat tcagcatttg ttctctgtct
     2581 tagtcagggt ttctgttcct gcataaacat cagaccaaga aacaagctgg ggaggaaagg
     2641 gtttattcag cttacacttc catactgctg ttcatcacca aaggaagtca ggactggaac
     2701 tcaagcaggt caggaagtag gagctgatgc agaggccatg gagggacatt ccttactggc
     2761 ttgcttcccc tggcttgctc agcttgcttt cttacagaac ccaagtctac cagcctagag
     2821 acagcaccaa ccacaagggg ccctcccacc cttgatcaat aattgagaaa aatgccttac
     2881 agttggatct catgaaggca ttttctcacc tgaagctcct ttctctgtga taactccagg
     2941 tggtgtcaag ttgacacaca aacacattac tattaagcct caacccttac tttcttatta
     3001 atccccatga tcaaaataac tttaaaagtc ccacagtctt tgaaaattct taaaatttca
     3061 atccctttaa aatatccaat ctcttttaaa attcaaagtc tttttacaat taaaaagtct
     3121 cttaactgtg gtctccacta aaatactttc ttccttcaag agggaaaaat atcagggcac
     3181 agtcacaaac aattaaaagc aaaatcaaac tacaacctca aacgtctggg accctccaag
     3241 ggcttgggtc acttctctag ctctgccctt tgtagcacac aacttgtctt ctaggctcca
     3301 gatgcctgta ctccactgct gctgctgttc ttggtagtca tttatggtac tggcatctcc
     3361 aaaacactgt tgtctttgct gtaactaggc ttcaccaata gcctctcata ggctctcttc
     3421 atggtgccaa gcctcaaatc ctttgcatga ccccttcagt cctgggccat caactgctac
     3481 tgaggctgca cctttaccag tggccttcca tggcctctca catgccaagc ctcagctgct
     3541 ctttatgtct tcaaaaccag tatgactctt aaacataacc aagtccagct gcagctaagg
     3601 tagaaccttg tctatctctg gaacacagcc tctttgtgct ctcagaaaac acttccctcc
     3661 tatgactagg caggcctttt actcagatct ccttgcttat gtctcccaat tactaggatt
     3721 taaggcaagc atcacatggc caggctctca agcaaatctg aaaaacttta catgtatgat
     3781 ttttagagaa tttatcatct gcatatcctc tgaatgtgtg tgtaatataa aataaagtaa
     3841 tataaaaact ca
//
