LOCUS       NM_010440               1644 bp    mRNA    linear   ROD 05-FEB-2024
DEFINITION  Mus musculus high mobility group 20B (Hmg20b), transcript variant
            1, mRNA.
ACCESSION   NM_010440
VERSION     NM_010440.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1644)
  AUTHORS   Thompson,C.L., Ng,L., Menon,V., Martinez,S., Lee,C.K.,
            Glattfelder,K., Sunkin,S.M., Henry,A., Lau,C., Dang,C.,
            Garcia-Lopez,R., Martinez-Ferre,A., Pombero,A., Rubenstein,J.L.R.,
            Wakeman,W.B., Hohmann,J., Dee,N., Sodt,A.J., Young,R., Smith,K.,
            Nguyen,T.N., Kidney,J., Kuan,L., Jeromin,A., Kaykas,A., Miller,J.,
            Page,D., Orta,G., Bernard,A., Riley,Z., Smith,S., Wohnoutka,P.,
            Hawrylycz,M.J., Puelles,L. and Jones,A.R.
  TITLE     A high-resolution spatiotemporal atlas of gene expression of the
            developing mouse brain
  JOURNAL   Neuron 83 (2), 309-323 (2014)
   PUBMED   24952961
REFERENCE   2  (bases 1 to 1644)
  AUTHORS   Wiese,C.B., Ireland,S., Fleming,N.L., Yu,J., Valerius,M.T.,
            Georgas,K., Chiu,H.S., Brennan,J., Armstrong,J., Little,M.H.,
            McMahon,A.P. and Southard-Smith,E.M.
  TITLE     A genome-wide screen to identify transcription factors expressed in
            pelvic Ganglia of the lower urinary tract
  JOURNAL   Front Neurosci 6, 130 (2012)
   PUBMED   22988430
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1644)
  AUTHORS   Ceballos-Chavez,M., Rivero,S., Garcia-Gutierrez,P.,
            Rodriguez-Paredes,M., Garcia-Dominguez,M., Bhattacharya,S. and
            Reyes,J.C.
  TITLE     Control of neuronal differentiation by sumoylation of BRAF35, a
            subunit of the LSD1-CoREST histone demethylase complex
  JOURNAL   Proc Natl Acad Sci U S A 109 (21), 8085-8090 (2012)
   PUBMED   22570500
  REMARK    GeneRIF: Our data uncover a mechanism of regulation of the
            LSD1-CoREST complex and provide a molecular explanation for the
            antagonism between Braf35 and iBraf in neuronal differentiation.
REFERENCE   4  (bases 1 to 1644)
  AUTHORS   Rajan,S., Chu Pham Dang,H., Djambazian,H., Zuzan,H., Fedyshyn,Y.,
            Ketela,T., Moffat,J., Hudson,T.J. and Sladek,R.
  TITLE     Analysis of early C2C12 myogenesis identifies stably and
            differentially expressed transcriptional regulators whose
            knock-down inhibits myoblast differentiation
  JOURNAL   Physiol Genomics 44 (2), 183-197 (2012)
   PUBMED   22147266
REFERENCE   5  (bases 1 to 1644)
  AUTHORS   Taher,L., Collette,N.M., Murugesh,D., Maxwell,E., Ovcharenko,I. and
            Loots,G.G.
  TITLE     Global gene expression analysis of murine limb development
  JOURNAL   PLoS One 6 (12), e28358 (2011)
   PUBMED   22174793
REFERENCE   6  (bases 1 to 1644)
  AUTHORS   Percec,I., Thorvaldsen,J.L., Plenge,R.M., Krapp,C.J., Nadeau,J.H.,
            Willard,H.F. and Bartolomei,M.S.
  TITLE     An N-ethyl-N-nitrosourea mutagenesis screen for epigenetic
            mutations in the mouse
  JOURNAL   Genetics 164 (4), 1481-1494 (2003)
   PUBMED   12930754
REFERENCE   7  (bases 1 to 1644)
  AUTHORS   Marmorstein,L.Y., Kinev,A.V., Chan,G.K., Bochar,D.A., Beniya,H.,
            Epstein,J.A., Yen,T.J. and Shiekhattar,R.
  TITLE     A human BRCA2 complex containing a structural DNA binding component
            influences cell cycle progression
  JOURNAL   Cell 104 (2), 247-257 (2001)
   PUBMED   11207365
REFERENCE   8  (bases 1 to 1644)
  AUTHORS   Puttagunta,R., Gordon,L.A., Meyer,G.E., Kapfhamer,D.,
            Lamerdin,J.E., Kantheti,P., Portman,K.M., Chung,W.K., Jenne,D.E.,
            Olsen,A.S. and Burmeister,M.
  TITLE     Comparative maps of human 19p13.3 and mouse chromosome 10 allow
            identification of sequences at evolutionary breakpoints
  JOURNAL   Genome Res 10 (9), 1369-1380 (2000)
   PUBMED   10984455
REFERENCE   9  (bases 1 to 1644)
  AUTHORS   Sumoy,L., Carim,L., Escarceller,M., Nadal,M., Gratacos,M.,
            Pujana,M.A., Estivill,X. and Peral,B.
  TITLE     HMG20A and HMG20B map to human chromosomes 15q24 and 19p13.3 and
            constitute a distinct class of HMG-box genes with ubiquitous
            expression
  JOURNAL   Cytogenet Cell Genet 88 (1-2), 62-67 (2000)
   PUBMED   10773667
REFERENCE   10 (bases 1 to 1644)
  AUTHORS   Wattler,F., Wattler,S., Kelly,M., Skinner,H.B. and Nehls,M.
  TITLE     Cloning, chromosomal location, and expression analysis of murine
            Smarce1-related, a new member of the high-mobility 365 group gene
            family
  JOURNAL   Genomics 60 (2), 172-178 (1999)
   PUBMED   10486208
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC155937.4, AK155890.1 and BE956207.1.
            
            [WARNING] On Mar 15, 2024 this sequence was replaced by
            NM_010440.4.
            
            On Jul 10, 2009 this sequence version replaced NM_010440.2.
            
            Transcript Variant: This variant (1) represents the longest
            transcript. All three variants encode the same protein.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AF146224.1, AK155890.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-124               AC155937.4         75095-75218         c
            125-1623            AK155890.1         1-1499
            1624-1644           BE956207.1         1-21                c
FEATURES             Location/Qualifiers
     source          1..1644
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="10"
                     /map="10 39.72 cM"
     gene            1..1644
                     /gene="Hmg20b"
                     /gene_synonym="BRAF35; Hmgx2; Hmgxb2; Smarce1r"
                     /note="high mobility group 20B"
                     /db_xref="GeneID:15353"
                     /db_xref="MGI:MGI:1341190"
     exon            1..294
                     /gene="Hmg20b"
                     /gene_synonym="BRAF35; Hmgx2; Hmgxb2; Smarce1r"
                     /inference="alignment:Splign:2.1.0"
     exon            295..403
                     /gene="Hmg20b"
                     /gene_synonym="BRAF35; Hmgx2; Hmgxb2; Smarce1r"
                     /inference="alignment:Splign:2.1.0"
     exon            404..607
                     /gene="Hmg20b"
                     /gene_synonym="BRAF35; Hmgx2; Hmgxb2; Smarce1r"
                     /inference="alignment:Splign:2.1.0"
     exon            608..728
                     /gene="Hmg20b"
                     /gene_synonym="BRAF35; Hmgx2; Hmgxb2; Smarce1r"
                     /inference="alignment:Splign:2.1.0"
     exon            729..775
                     /gene="Hmg20b"
                     /gene_synonym="BRAF35; Hmgx2; Hmgxb2; Smarce1r"
                     /inference="alignment:Splign:2.1.0"
     exon            776..848
                     /gene="Hmg20b"
                     /gene_synonym="BRAF35; Hmgx2; Hmgxb2; Smarce1r"
                     /inference="alignment:Splign:2.1.0"
     exon            849..1064
                     /gene="Hmg20b"
                     /gene_synonym="BRAF35; Hmgx2; Hmgxb2; Smarce1r"
                     /inference="alignment:Splign:2.1.0"
     exon            1065..1197
                     /gene="Hmg20b"
                     /gene_synonym="BRAF35; Hmgx2; Hmgxb2; Smarce1r"
                     /inference="alignment:Splign:2.1.0"
     exon            1198..1629
                     /gene="Hmg20b"
                     /gene_synonym="BRAF35; Hmgx2; Hmgxb2; Smarce1r"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cccgggaaag ttttttcaga ggtgaaaaga gccgggaagt ccgggcctgc gcggggcggg
       61 ggctgcgggg cgcggcctcc gggactcgat ctcgcaacaa aggatcgcgg ggcctcctgc
      121 ccgaggacct ccccgccccg ggatccgcct ccccggtccg ggccccccgg ggatcgccct
      181 gcggttccca tcgaggtggc aggcaggacc ccctgacctt tgccggcttc tgttccagat
      241 cccgcccgga gtggccatgt cccacggtcc ccggcagcca ggcgcagcca ccgcacctgc
      301 gggaggcaag actccgggcc agcacggggc ctttgtagtg gctgtcaagc aggagcgcag
      361 cgagggttcc cgagctggag agaaggggcc ccaggaggag gagccagtga agaagcgagg
      421 ctggcccaaa ggcaaaaaaa gaaagaagat tctcccaaat gggcccaagg cccccgtcac
      481 tggctatgtt cgcttcctga atgagaggcg ggaacagatt cgcacccgcc acccggacct
      541 tccattcccg gagatcacga agatgttggg cgccgagtgg agcaagctgc agccggcaga
      601 gaagcagcgg tacctggatg aggcagagaa ggagaaacag cagtacttga aggagctgtg
      661 ggcataccag cagtcagagg cctacaaggt ctgcactgag aagattcaag aaaacaaaat
      721 taaaaaagag gactccagtt ctgggctcat gaacaccctc ctgaatgggc acaagggtgt
      781 ggactgcgat ggcttttcca cctttgatgt gcccatcttc acggaagagt ttctggacca
      841 aaacaaagca cgcgaggcag agctgcggcg cctgagaaag atgaacgtgg ccttcgagga
      901 gcagaatgcg gtgctgcagc gccacacgca gagcatgagc agcgcgcgtg agcgtctgga
      961 gcaggagttg gcgctggagg agcggcgcac actggcattg cagcagcaac tacaggccgt
     1021 gaggcaggcg ctcacggcta gcttcgcctc cctgccggtg cccggcaccg gggagacacc
     1081 gaccctcggg acgctggact tttacatggc gcggcttcat ggagccatcg agcgcgaccc
     1141 cgcgcagcac gagagactga tcgcgcgcgt caaggagatc ctggcgcggg tagccagcga
     1201 gcacctgtga cagacctctt ggaccaggag atgcccctcc ccacccgccc agaaagaagc
     1261 tacaccttgg ggtctccagg cccccctcaa atgaaatctc aaccgcatcc ctttagcttc
     1321 gaaccccatc ccaggttgca gagaccggga gacctgcctg cctcacaggg agggtcacac
     1381 tacagtgggt caggaacaga ggagccaagg ccgctggact cggatacccc acccccaccc
     1441 ctggtgctga gcaggaggac cccaggtcgc tcaccataca gccaggggac ctgctgcgca
     1501 ggcgctggct aacctggcag agccggggta ggggtggggc agtccgacag ccccttcccc
     1561 tgcgcctttc atcactcaat ctggactttt aaataagtgt tgaataaaaa caaatgggtt
     1621 ttcactcaaa aaaaaaaaaa aaaa
//
