LOCUS       NM_001357580             530 bp    mRNA    linear   ROD 05-JUN-2024
DEFINITION  Mus musculus HIG1 domain family, member 1B (Higd1b), transcript
            variant 2, mRNA.
ACCESSION   NM_001357580 XM_006534397
VERSION     NM_001357580.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 530)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 530)
  AUTHORS   Skarnes,W.C., Rosen,B., West,A.P., Koutsourakis,M., Bushell,W.,
            Iyer,V., Mujica,A.O., Thomas,M., Harrow,J., Cox,T., Jackson,D.,
            Severin,J., Biggs,P., Fu,J., Nefedov,M., de Jong,P.J., Stewart,A.F.
            and Bradley,A.
  TITLE     A conditional knockout resource for the genome-wide study of mouse
            gene function
  JOURNAL   Nature 474 (7351), 337-342 (2011)
   PUBMED   21677750
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL731670.13 and BU704939.1.
            
            On or before May 11, 2018 this sequence version replaced
            XM_006534397.3, NM_001357580.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BU704939.1, W42084.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-9                 AL731670.13        6778-6786
            10-530              BU704939.1         9-529
FEATURES             Location/Qualifiers
     source          1..530
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="11"
                     /map="11 66.48 cM"
     gene            1..530
                     /gene="Higd1b"
                     /gene_synonym="2310056K19Rik"
                     /note="HIG1 domain family, member 1B"
                     /db_xref="GeneID:75689"
                     /db_xref="MGI:MGI:1922939"
     exon            1..112
                     /gene="Higd1b"
                     /gene_synonym="2310056K19Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            113..262
                     /gene="Higd1b"
                     /gene_synonym="2310056K19Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             163..459
                     /gene="Higd1b"
                     /gene_synonym="2310056K19Rik"
                     /codon_start=1
                     /product="HIG1 domain family member 1B"
                     /protein_id="NP_001344509.1"
                     /db_xref="CCDS:CCDS36345.1"
                     /db_xref="GeneID:75689"
                     /db_xref="MGI:MGI:1922939"
                     /translation="MSANKGWWVPPEGEDNLSKKFLRKTRESPLVPIGVAGCLVIAAY
                     RIYRLKARGSTKLSIHLIHTRVAAQACAVGAIMLGAMYTMYRDYIKRVSEDAEK"
     exon            263..397
                     /gene="Higd1b"
                     /gene_synonym="2310056K19Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            398..530
                     /gene="Higd1b"
                     /gene_synonym="2310056K19Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      510..515
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Higd1b"
                     /gene_synonym="2310056K19Rik"
                     /note="hexamer: AATAAA"
     polyA_site      530
                     /gene="Higd1b"
                     /gene_synonym="2310056K19Rik"
                     /note="major polyA site"
ORIGIN      
        1 cctgacccca tagtgacaac tctggcattg gctttttatt gattcaaagc agcggatgct
       61 gagccttggt ctggctgttc attctccact ttctagccat ctatcgagta cgaagtgggc
      121 taaagcctag gcacacagct gttaacatct ggatccagga tcatgtctgc taacaagggc
      181 tggtgggtgc cacctgaggg tgaggacaac ctgtccaaga agttcctaag gaagaccagg
      241 gagtctccac tggtgcctat aggtgtagca ggctgcctgg tgatagcagc atacaggatt
      301 taccggctga aggctcgggg ttctaccaag ctctccatcc atctgattca caccagagtg
      361 gcggcacagg cgtgtgctgt gggggccatc atgcttggtg ccatgtatac aatgtacaga
      421 gattacatca agagggtgtc agaggatgcc gagaagtagg actccagagg tggcaggatg
      481 gcccagtccc ccggctgtct gcatgttcta ataaagctat gctgaggaaa
//
