LOCUS       NM_001145096            2262 bp    mRNA    linear   ROD 29-JUL-2024
DEFINITION  Mus musculus HERV-H LTR-associating 1 (Hhla1), mRNA.
ACCESSION   NM_001145096 XR_035229 XR_035264
VERSION     NM_001145096.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2262)
  AUTHORS   Skarnes,W.C., Rosen,B., West,A.P., Koutsourakis,M., Bushell,W.,
            Iyer,V., Mujica,A.O., Thomas,M., Harrow,J., Cox,T., Jackson,D.,
            Severin,J., Biggs,P., Fu,J., Nefedov,M., de Jong,P.J., Stewart,A.F.
            and Bradley,A.
  TITLE     A conditional knockout resource for the genome-wide study of mouse
            gene function
  JOURNAL   Nature 474 (7351), 337-342 (2011)
   PUBMED   21677750
  REMARK    Publication Status: Online-Only
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AK158329.1 and
            AC091276.7.
            
            On or before Feb 12, 2009 this sequence version replaced
            XR_035229.1, XR_035264.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK158329.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849381 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-67                AK158329.1         3-69
            68-68               AC091276.7         219170-219170       c
            69-1250             AK158329.1         71-1252
            1251-1251           AC091276.7         179579-179579       c
            1252-2262           AK158329.1         1254-2264
FEATURES             Location/Qualifiers
     source          1..2262
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="15"
                     /map="15 29.16 cM"
     gene            1..2262
                     /gene="Hhla1"
                     /gene_synonym="F930104E18Rik"
                     /note="HERV-H LTR-associating 1"
                     /db_xref="GeneID:654498"
                     /db_xref="MGI:MGI:3615329"
     exon            1..56
                     /gene="Hhla1"
                     /gene_synonym="F930104E18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            57..154
                     /gene="Hhla1"
                     /gene_synonym="F930104E18Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             76..1620
                     /gene="Hhla1"
                     /gene_synonym="F930104E18Rik"
                     /note="HERV-H LTR-associating protein 1 homolog"
                     /codon_start=1
                     /product="HERV-H LTR-associating protein 1 homolog
                     precursor"
                     /protein_id="NP_001138568.1"
                     /db_xref="CCDS:CCDS49618.1"
                     /db_xref="GeneID:654498"
                     /db_xref="MGI:MGI:3615329"
                     /translation="MQSFLLHCPPIRLCMGLACILFLWNAVSGLKGEGKKDKEMALPP
                     ATVSGNEGLKKEKNGSFLHAAESVFKEKKMVKGLEVLATTELPARSVDLSTLNLTELV
                     NGMLNRALKDSKQFFSVLSITSYSSFAFHKVSVAIYNISNPKTVDPAKFPTRHCYCLS
                     NRTNDLSDFTALLVDIVGNSTSYLTEIFKSTSILSVTQTNESDCVFICVMVGKSGRNL
                     SDFWEMVEKSPVINYTFTSGVSSVLATTRGTARTSRLTTQSQQSLLRPYSVRWSTQWV
                     SALKSLPWTKTSAPSEKELAESKQMFPELPVGTIGTHSSAPSSSNMTRTPWGTNRYTQ
                     APTVPMPMPLSVDDSTPEGPPWASLPSTSASIEDAQQLRSTGNLLHPTGILTTPSRLA
                     QPSRASGTLMPGTQTTNPTQAPAPRVPQTDGIPAEWPFIPEKEPARDPAAHQVSKCPR
                     PLLQEEAITDTPLPLAMKKLTPCLMELCRFFQQCLCAIQKRDFSSEAISNCYLPEKIR
                     KLITLH"
     exon            155..214
                     /gene="Hhla1"
                     /gene_synonym="F930104E18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            215..271
                     /gene="Hhla1"
                     /gene_synonym="F930104E18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            272..328
                     /gene="Hhla1"
                     /gene_synonym="F930104E18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            329..409
                     /gene="Hhla1"
                     /gene_synonym="F930104E18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            410..493
                     /gene="Hhla1"
                     /gene_synonym="F930104E18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            494..577
                     /gene="Hhla1"
                     /gene_synonym="F930104E18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            578..661
                     /gene="Hhla1"
                     /gene_synonym="F930104E18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            662..718
                     /gene="Hhla1"
                     /gene_synonym="F930104E18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            719..805
                     /gene="Hhla1"
                     /gene_synonym="F930104E18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            806..1033
                     /gene="Hhla1"
                     /gene_synonym="F930104E18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1034..1270
                     /gene="Hhla1"
                     /gene_synonym="F930104E18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1271..1339
                     /gene="Hhla1"
                     /gene_synonym="F930104E18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1340..1414
                     /gene="Hhla1"
                     /gene_synonym="F930104E18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1415..1571
                     /gene="Hhla1"
                     /gene_synonym="F930104E18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1572..2262
                     /gene="Hhla1"
                     /gene_synonym="F930104E18Rik"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctaatcttct tggctgtcta aattctttga agtcattcat cctgctcagg agaccggttg
       61 tcaaggcttc caagcatgca gagcttcctg cttcattgtc ctccaataag gctgtgtatg
      121 ggccttgcct gtatcctctt tctctggaat gcagtgtctg gtcttaaagg agaaggcaag
      181 aaagataaag aaatggctct cccacctgca acagtgtctg gaaatgaagg cctcaagaag
      241 gagaaaaacg gatcctttct tcatgcagca gagtctgtct tcaaagaaaa aaagatggta
      301 aagggattag aggttcttgc aactacagaa ctcccagcaa ggtcagtgga tctgtctaca
      361 ctcaacctga ccgagcttgt gaatggcatg ctcaatagag ctttaaaaga tagcaagcaa
      421 ttcttctccg tacttagcat cacttcttat agttcatttg cctttcacaa ggtttccgtg
      481 gccatctaca acatttccaa cccaaagaca gtcgacccag ccaaattccc tacccggcac
      541 tgctactgtt tgagcaatag gaccaatgac ttatcagatt tcacagcatt gctggtggac
      601 attgttggaa attctacaag ctacctcact gagattttta agtcaacctc catcctctct
      661 gtgactcaga ccaatgaatc ggactgtgtc ttcatctgtg tgatggtggg aaagtcagga
      721 aggaatcttt ctgacttctg ggagatggtg gagaaatccc ctgttatcaa ctacacattt
      781 accagtggtg tgtccagtgt tttagcaact accaggggaa cagcaaggac ttcaaggctc
      841 acaactcaaa gccagcagtc acttctaaga ccatattctg tacgctggag cacacaatgg
      901 gtatctgctc tgaagtctct cccctggaca aagacaagtg ctccttcaga gaaagagttg
      961 gcagaaagca aacagatgtt tccagagctt cctgttggga ccataggcac acacagtagt
     1021 gccccaagct caagtaacat gaccagaaca ccatggggga caaatagata cacacaagca
     1081 cctacagtac ccatgcctat gccactaagt gtggatgata gcacacctga aggaccaccc
     1141 tgggcaagcc ttccctccac atcagcctcc attgaagatg cccagcagct caggagcaca
     1201 ggaaatctgt tgcatcctac tggaatactg actacaccca gccgactagc acagcccagc
     1261 agggcctcgg gaacactcat gcctggaaca cagactacaa acccaaccca agcaccagct
     1321 cctagagtcc ctcagacaga tggtattcct gcagagtggc cattcatccc tgagaaagag
     1381 ccagcccggg acccagcagc ccatcaagtt tcaaagtgtc ctcggccact cctccaagaa
     1441 gaggccatta cagatactcc tctgcccctg gccatgaaga aactcacccc atgtctgatg
     1501 gaactctgcc gcttcttcca gcaatgcctc tgtgcaatcc aaaagcggga tttcagttca
     1561 gaagccataa gcaattgtta cctgccagag aaaatcagga agctgatcac acttcattag
     1621 aggatctagg catagctgtc ttccagtact gatagaagat gctcctgggc ttcattctgg
     1681 attgttaaac agtagaaatg catgtccttc cccagtaagc ggaggaccaa tttctcaagt
     1741 ctcagggtta tcataaaacc ttactaactt tatctttcat tttttaaatc tccattatcc
     1801 accaaatctg agcaccaatc ccaggtttgt accctttccc ctaatctgtt tttagatttg
     1861 atctaggttg cctcaatagc cttgggtgtt ttatttaaat gaagagggga ataaacaagt
     1921 tgacagactc aggaatgtaa acagacaagg aagatatcct ctgtaccagt gatgtcctgc
     1981 ccccagtgca tttcttcaca gtgaagaaaa ggaaaaattt caaaacaata ctttttgtat
     2041 tatctagagt cagcccactt caacagattt ttctctcact aactgaaagt gtgttgagtc
     2101 tctactttct gtcagtcgtg tattatacta aggcaagtgt tgtaaagatg aattacaaat
     2161 agatctagga actgggtcat agttggctgg tgggacatta tagttgtaaa gctcaagtta
     2221 aaataaaaat aaaagtgata ggactaagtc acctatccaa gc
//
