LOCUS       XM_030248978            1779 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus homogentisate 1, 2-dioxygenase (Hgd),
            transcript variant X1, mRNA.
ACCESSION   XM_030248978
VERSION     XM_030248978.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000082.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1779
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="16"
     gene            1..1779
                     /gene="Hgd"
                     /gene_synonym="aku; Hgo"
                     /note="homogentisate 1, 2-dioxygenase; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 4 mRNAs, 25 ESTs, 791 long SRA reads, 7 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 2 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:15233"
                     /db_xref="MGI:MGI:96078"
     CDS             241..1578
                     /gene="Hgd"
                     /gene_synonym="aku; Hgo"
                     /codon_start=1
                     /product="homogentisate 1,2-dioxygenase isoform X1"
                     /protein_id="XP_030104838.1"
                     /db_xref="GeneID:15233"
                     /db_xref="MGI:MGI:96078"
                     /translation="MAELKYISGFGNECASEDPRCPGSLPKGQNNPQVCPYNLYAEQL
                     SGSAFTCPRNTNKRSWLYRILPSVSHKPFESIDQGHVTHNWDEVGPDPNQLRWKPFEI
                     PKASEKKVDFVSGLYTLCGAGDIKSNNGLAVHIFLCNSSMENRCFYNSDGDFLIVPQK
                     GKLLIYTEFGKMSLQPNEICVIQRGMRFSVDVFEETRGYILEVYGVHFELPDLGPIGA
                     NGLANPRDFLIPVAWYEDRRVPGGYTVINKFQGKLFACKQDVSPFNVVAWHGNYTPYK
                     YNLENFMVINAVAFDHADPSIFTVLTAKSLRPGVAIADFVIFPPRWGVADKTFRPPYY
                     HRNCMSEFMGLIKGHYEAKQGGFLPGGGSLHSAMTPHGPDADCFEKASKAKLEPERIA
                     DGTMAFMFESSLSLAVTKWGLKTCSCLDENYYKCWEPLRSHFTPNSRSPTEPK"
ORIGIN      
        1 atgatctggg agctgagctc atgcacagga gacagtggca gagagcatcc agtccttgtg
       61 cccttcttcg ggctgcttgc accagttaag caactctgcc ctgagtgacc tcccgaccaa
      121 ggaaacacag agaactggta aaaatcaaca acatccgtcc agagaggagt tttaaagaga
      181 cacgggaaca ttggtacctc acaaactcct tggcctgggt ctccctccag cagaagggaa
      241 atggcagagt taaagtacat ttctggattt gggaatgagt gtgcttcaga ggatcctcgc
      301 tgtccaggtt ccctgcccaa aggacagaat aatcctcagg tctgccccta caacctctac
      361 gctgagcagc tctcgggatc agccttcact tgtccacgga acaccaataa gagaagctgg
      421 ctgtatagga ttcttccttc agtttctcac aaaccctttg agtccatcga ccaaggccat
      481 gtcactcaca actgggatga agttggccct gatcctaacc agctaagatg gaaaccattt
      541 gagattccaa aagcgtctga gaagaaagtg gactttgtga gtggtttgta caccttatgt
      601 ggagcaggag acatcaagtc taacaacggc cttgctgtgc acatttttct gtgtaactcc
      661 tccatggaga acaggtgctt ttacaactca gatggggatt tcctgattgt tccccagaaa
      721 gggaaacttc tcatttacac cgagtttggc aagatgtccc tgcagcccaa tgaaatctgc
      781 gtcattcaga gaggaatgcg attcagcgtc gatgtctttg aggagaccag gggctacatc
      841 ctggaggtct atggtgtcca ctttgagtta cctgacctgg gacccatcgg agcaaatggc
      901 ttggccaatc ctcgagattt cttgattccc gttgcctggt atgaagatcg tcgagtgcca
      961 ggtggttaca ctgtgattaa taaattccag ggcaagctgt ttgcttgcaa acaggatgtc
     1021 tctccattca atgtcgtggc ctggcatgga aactacacac cctacaagta caacctagag
     1081 aacttcatgg tcatcaatgc ggtagccttt gaccatgcgg atccttccat tttcaccgtg
     1141 ctgactgcca aatccctccg acctggggtg gctattgctg actttgtcat cttcccacct
     1201 cggtggggag ttgcagataa aaccttcaga cctccttatt accacaggaa ctgcatgagt
     1261 gagttcatgg gcctcatcaa aggtcactat gaggcaaagc aaggtggatt cctgccaggg
     1321 ggcggcagcc tgcacagtgc catgacccct cacggccccg atgcagactg ctttgaaaag
     1381 gccagcaagg ccaaactcga gccagagagg atagctgacg gcaccatggc gtttatgttt
     1441 gaatcttcct taagtttggc ggtcaccaag tggggactca agacctgtag ctgtttggat
     1501 gagaactact acaaatgttg ggagcctctc cggagccact tcacccccaa ttccaggagc
     1561 ccgacagagc ctaagtgaga ctggagccct ctactgtaat tgagaacaga cttgcatagc
     1621 ttccttgaga tcctcacagc tctgatgcta cagggacagc gattgaaatg agagctcact
     1681 tgtcatagtc aagaaactca gaatgtttgt ggacatgcat tcagaaatgc ctatggcttc
     1741 ctaaattact caataaatct gtgttctgtg gaagctgca
//
