LOCUS       XM_030254590            5127 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus HFM1, ATP-dependent DNA helicase homolog
            (Hfm1), transcript variant X4, mRNA.
ACCESSION   XM_030254590
VERSION     XM_030254590.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000071.7) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5127
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="5"
     gene            1..5127
                     /gene="Hfm1"
                     /gene_synonym="A330009G12Rik; Gm1046; Mer3; Sec63d1"
                     /note="HFM1, ATP-dependent DNA helicase homolog; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 ESTs, 37 long SRA reads, and 99% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     6 samples with support for all annotated introns"
                     /db_xref="GeneID:330149"
                     /db_xref="MGI:MGI:3036246"
     CDS             288..4661
                     /gene="Hfm1"
                     /gene_synonym="A330009G12Rik; Gm1046; Mer3; Sec63d1"
                     /codon_start=1
                     /product="probable ATP-dependent DNA helicase HFM1 isoform
                     X2"
                     /protein_id="XP_030110450.1"
                     /db_xref="GeneID:330149"
                     /db_xref="MGI:MGI:3036246"
                     /translation="MKLKTRTTLQQDPSAHVYWESLIAEAKRLRAQNWCCFYRPRRGK
                     GKMPRMLTSNLKIINEDTNCISPTQKIHFSYNVHEQDYLNLGGSNNNDMSHVAGKLMY
                     GSSQKYKNHMGAKSPSARSSPGDTKLHDVAEDRQGTSAFKKRLSRTCDSEHDCDYADG
                     SLNLSSHISPVKLTQTKISKENAWTCSNSKQKRQYSTNKFKANDAFSASGIGKDIFKA
                     PSFPAASQPHDIQGITPNGLGSLKAVTEIPAKFRNIFKEFPYFNYIQSKAFDDLLYTD
                     RNFVICAPTGSGKTVVFELAITRLLMEVPLPWLNMKIVYMAPIKALCSQRFDDWKEKF
                     GPVGLNCKELTGDTVMDDLFEIQHANIIITTPEKWDSVTRKWRDNSFIQLVRLFLIDE
                     VHVIKDENRGPTLEVVVSRMKTVQSLSRDLESASPVPVRFVAVSATIPNAEDIAEWLS
                     DGERPAVCLKMDESHRPVKLQKVVLGFPCSSSQTEFKFDLALNYKVYSVIRTYSDQKP
                     TLVFCSTRKGVQQAASVLVKDAKFIISVEQKLRLQKSAYSIRDSKLKDTLVYGVGYHH
                     AGMELSDRKLVEGLFTSGDLPVLFTTSTLAMGMNMPAHLVVIKSTMHYSGGVFEEYSE
                     TDILQMIGRAGRPQFDTTATAVIMTRLSTREKYVQMLACNDTVESSLHRHLIEHLNAE
                     IVLHTITDVNIALDWIRSTMLYIRALKNPSHYGFSSGLNKDGIEAKLQELCLKNLKDL
                     SSLDLIKMDEDVNFKPTEAGRLMAWYYITFETVKKFCAISGKETLLDLISMISSCNEF
                     LDVQLRISEKRILNTLNKDPNRITIRFPMAERIKTREMKVNCLIQAQLGCIPIQDFAL
                     TQDTVKIFRNGSRIARWLSDFVAAQEKKFAVLLNSVILTKCFKCKLWENSKHVSKQLD
                     KIGISLSNTMVNAGLTSFKKIEEANARELELILNRHPPFGTQIKEAVAHLPKYELEVE
                     QIARYSDIKAEILVTIILRNFEQLQTKRTAPDFHYATLIIGDADNQVVFKHKIMDSVL
                     LKSGNWVKKIDVKRALISEDLSINLISSDYVGLDIHQKFTVFYFGPRKFVNETAMERS
                     SETDISHSDYSGRATATGSSKGMATCKKPGNRECHHHCKNKHACGHDCCKIGVAQKPE
                     VKESAMSSYLSDLKSRDAVSSLPLAKRLKIQMNKSQNVDLKEFGFTPRPSLSSISRSE
                     YLNTPELSILEQRNQHEIYGKVQQGPSEYRDKDFPRWDYCTTSSEKTPQTVMFSRHAN
                     IPGNHRVADEDKSKSSEVLGVNLELGNEVWDDFDDESLIEVMSLSADAEKMAASGFGD
                     TRDSSLGGSKLPFQKSSSRFQRDNSNSFASSPGKPDAYLRDCSRSSFGLSSVAEIPQR
                     AENASLANLQERRPLTLSPVIERMCFAHSKKTPQSPKFKEVDIFIGNSGSKKEIDLSK
                     YYPDDAAEEMKALLGIFNGIF"
ORIGIN      
        1 gggtcggtaa atcggcgctc gactcagccc ccctcccccc ggcaggtggc tgtggcctgg
       61 gcgggacgcg cgcgcctcgc gtgggcgcgt ggggggctcg gaactgttcc aggttattga
      121 agcacattaa gaagaagaaa caaacatccc ttttttgctt tctagggaga aagataaact
      181 aaacacacag taacaattac agatttcaga caaggtctgt ttttcaacaa tgccaaagtc
      241 agacgattgc ttcttttcca tggataattt gtttttcagt agcccagatg aaactgaaaa
      301 caagaacgac gctgcaacag gatccttctg cacacgttta ttgggagagc ttgattgcag
      361 aggcgaaaag acttcgagcc cagaactggt gctgctttta taggcctagg agagggaaag
      421 gaaagatgcc aagaatgtta acatcaaact tgaagatcat taatgaagac acaaattgta
      481 tttcaccaac acaaaaaatc catttttcct ataatgtaca tgaacaggat tacctaaatt
      541 taggaggatc aaataacaat gacatgtccc atgtagctgg gaagctgatg tatggttctt
      601 ctcagaaata taaaaatcac atgggtgcta agagtccatc tgcaaggagt agtcctggtg
      661 atacaaaatt acatgatgtg gcagaagaca gacagggcac atcagcattc aaaaaaagac
      721 tgtctagaac atgtgacagt gaacatgact gtgactatgc tgatggaagt ttaaacttga
      781 gttctcatat cagcccagtg aaacttaccc aaacgaaaat aagcaaagag aatgcatgga
      841 cgtgtagcaa tagtaagcag aaacgtcagt attctacaaa caaattcaaa gcaaatgatg
      901 ctttttctgc ttctggaatt ggaaaagaca tattcaaagc accatcattt cctgctgcat
      961 ctcagcctca tgatattcaa ggaataaccc caaatggctt aggttctttg aaagctgtca
     1021 cggaaatccc ggcaaaattt agaaatatat tcaaagaatt cccttacttc aactatatac
     1081 aatccaaagc ctttgatgat cttctttaca cagataggaa ttttgtgatt tgtgccccca
     1141 ctggttctgg gaaaactgta gtgtttgagc tagcgataac aagattgtta atggaagtac
     1201 cattgccatg gctaaacatg aagattgttt acatggcacc aataaaagcc ctttgtagtc
     1261 agcggtttga tgactggaaa gaaaagtttg gaccagtagg cttgaattgt aaagaactta
     1321 ctggtgatac agtaatggat gacctgtttg agattcagca tgcaaatata attataacaa
     1381 ctccagagaa gtgggacagt gtgactagga agtggagaga caactctttt atccaactgg
     1441 ttcgactgtt tctcattgat gaggtgcatg ttattaaaga tgaaaatcgt ggtccaactc
     1501 ttgaagttgt agttagcaga atgaaaactg tacagtcttt atctagggat ttagaaagtg
     1561 ccagccctgt tccagtgaga tttgtagctg tgtctgcaac aattcccaat gctgaggata
     1621 tcgcagaatg gctttcagat ggtgagagac ctgctgtatg tctcaaaatg gatgagagcc
     1681 atagacctgt gaaacttcag aaagtagtcc tgggttttcc ctgtagtagt agccaaactg
     1741 aatttaagtt tgatttggcc ctcaactata aagtgtacag tgttattcga acatactccg
     1801 atcagaagcc cacacttgtg ttttgttcaa caaggaaagg tgtgcagcag gctgcttctg
     1861 ttcttgtgaa ggatgctaag tttatcatct ctgtggagca gaaactacgg ttgcagaagt
     1921 ctgcatattc tataagggat tcaaagctga aagatacctt ggtatatggt gttggttacc
     1981 atcatgctgg aatggagctg tcagatagaa aattggttga aggattgttt acctctggag
     2041 atctaccagt tcttttcact accagtactc tagctatggg catgaacatg ccggctcacc
     2101 tggttgttat aaagtctacc atgcactaca gtggaggtgt gtttgaagag tacagcgaga
     2161 ccgacatcct gcagatgatt gggagagctg gcagacccca gtttgacact acagctactg
     2221 cagtcattat gactcgacta agtacaagag agaagtacgt gcagatgcta gcttgtaacg
     2281 acactgtaga gagcagtttg cacagacatc ttattgaaca tttaaatgca gaaatagtgc
     2341 tgcataccat cacagacgtg aacattgctc tggactggat ccgatcaaca atgctgtata
     2401 tcagagctct gaaaaaccca tctcactatg gtttttcatc tggattgaac aaagatggga
     2461 ttgaagcaaa attacaagaa ttatgtttga agaatctgaa agatttatca tcactagacc
     2521 tgataaagat ggatgaagat gttaatttta aaccaacaga ggcaggaaga ctaatggctt
     2581 ggtattatat tacatttgag acagtcaaga aattttgtgc aatcagtgga aaagaaactt
     2641 tattggattt aatttcaatg atatcgagct gcaatgagtt tctagatgtg cagctgagga
     2701 taagtgaaaa gagaatactg aacaccttaa acaaagaccc aaaccggata actatcagat
     2761 ttccaatggc agaaagaatt aaaacaagag aaatgaaagt aaactgtctt attcaggctc
     2821 agctaggatg cattcctata caagattttg ctttgacaca agatacagtg aagattttca
     2881 gaaatggctc acgaattgca agatggttgt cagattttgt ggctgctcag gaaaagaagt
     2941 ttgctgtgct tttaaacagt gtgattttaa ctaaatgttt taagtgtaaa ctctgggaaa
     3001 actctaaaca tgtatcaaaa cagctggata aaattggcat atcattgtca aataccatgg
     3061 taaatgcagg cttaacttct tttaaaaaaa tagaagaagc aaatgcaaga gaacttgaac
     3121 tgattttaaa tagacaccca ccatttggga cccagataaa agaagctgtg gcgcatctgc
     3181 cgaagtatga gcttgaggtg gagcagattg caagatacag tgatatcaag gcagaaatac
     3241 tggtgaccat tatattaaga aactttgagc agctgcaaac taaaagaaca gcaccagact
     3301 tccactatgc caccttaatc ataggtgatg cagataacca agtcgttttt aagcacaaaa
     3361 ttatggattc tgtcttgtta aaaagtggaa attgggttaa aaaaattgat gtgaagagag
     3421 ctcttatatc agaagatctc agcataaatc taattagttc tgattatgtt ggtcttgata
     3481 ttcaccagaa atttacagtc ttttatttcg gacccaggaa gtttgtaaat gaaacagcta
     3541 tggaaagaag ctcagaaaca gatatttctc attctgacta ctcaggtaga gccactgcaa
     3601 caggatccag taaaggaatg gctacctgca aaaaacctgg gaacagagaa tgccatcatc
     3661 actgtaaaaa taaacacgca tgtggacatg actgctgtaa aattggagtt gcacaaaagc
     3721 cggaagttaa agagtcagca atgtcttcat atctgtctga cttaaaaagc agagatgctg
     3781 tttcttctct tcctctagcc aagcgactca agatacagat gaacaaatct caaaatgtgg
     3841 accttaaaga gtttggtttt actccaaggc cttccctttc cagtatatca aggtcagaat
     3901 atttaaatac ccctgaattg tcaatattag aacagaggaa tcagcatgaa atctatggaa
     3961 aagttcaaca gggaccatct gaatatcgtg acaaagattt tcctagatgg gactattgta
     4021 caacttcaag tgaaaagacc cctcaaacgg tgatgttcag caggcatgct aatatacctg
     4081 gaaaccacag agttgcagat gaagacaaaa gcaagtcttc agaagttctg ggtgtgaact
     4141 tagagctggg aaatgaagtc tgggatgact ttgatgatga gagcttaata gaagttatga
     4201 gcctttcagc tgatgctgag aagatggctg catcaggatt tggagacact cgtgattcaa
     4261 gtctcggcgg aagtaagcta cccttccaaa agtcaagcag cagattccaa agagacaact
     4321 caaacagttt tgcttcgtcg cctgggaagc cagatgctta tttgcgagat tgttccaggt
     4381 ccagcttcgg gctgtcctct gtggcagaga tccctcagcg ggctgagaat gcaagtcttg
     4441 ccaatttaca agagaggaga ccgctgactc tctcaccagt gattgagagg atgtgctttg
     4501 cccactctaa gaaaacacca cagtctccca agtttaagga agtggatatt tttattggaa
     4561 acagtggctc taaaaaggaa attgatctta gtaagtatta tcctgatgat gcagctgaag
     4621 aaatgaaggc tcttctggga atatttaatg gcattttcta aagaaaaatg tagttaataa
     4681 ggcaaagtat aaacatgtgt aatgattaaa aatgcttttt atttctaaag ataattgaga
     4741 attgttcaga gtttttttct taagtttgat tcattccttg actttcttat aacaaaatat
     4801 atggactgat aatattttta tttttattgt aacttctgga agaatgtgtg ttttttcagt
     4861 aaactgataa ttaaattatc ttcataaata atttcttatt aaaccaattt taataggctc
     4921 tttatttcat ttttatattt tcttaagaaa gatgtctgag aaagcacaat aatgctgtca
     4981 gtgaccatgt gtagtcacgg tgtattcgcc agcagggttc ctgtgtgtcc tgctctgttg
     5041 tttgctcttc tgttttttta agaatccagt agcctttgaa tctgttcttt cattttgagc
     5101 agtaataaat gaaaatgcta atcagtg
//
