LOCUS       NM_020586               2744 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus HERPUD family member 2 (Herpud2), mRNA.
ACCESSION   NM_020586
VERSION     NM_020586.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2744)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 2744)
  AUTHORS   Tonelli Gombalova,Z., Kosuth,J., Alexovic Matiasova,A.,
            Zrubakova,J., Zezula,I., Giallongo,T., Di Giulio,A.M., Carelli,S.,
            Tomaskova,L., Daxnerova,Z. and Sevc,J.
  TITLE     Majority of cerebrospinal fluid-contacting neurons in the spinal
            cord of C57Bl/6N mice is present in ectopic position unlike in
            other studied experimental mice strains and mammalian species
  JOURNAL   J Comp Neurol 528 (15), 2523-2550 (2020)
   PUBMED   32212159
REFERENCE   3  (bases 1 to 2744)
  AUTHORS   Koscielny,G., Yaikhom,G., Iyer,V., Meehan,T.F., Morgan,H.,
            Atienza-Herrero,J., Blake,A., Chen,C.K., Easty,R., Di Fenza,A.,
            Fiegel,T., Grifiths,M., Horne,A., Karp,N.A., Kurbatova,N.,
            Mason,J.C., Matthews,P., Oakley,D.J., Qazi,A., Regnart,J.,
            Retha,A., Santos,L.A., Sneddon,D.J., Warren,J., Westerberg,H.,
            Wilson,R.J., Melvin,D.G., Smedley,D., Brown,S.D., Flicek,P.,
            Skarnes,W.C., Mallon,A.M. and Parkinson,H.
  TITLE     The International Mouse Phenotyping Consortium Web Portal, a
            unified point of access for knockout mice and related phenotyping
            data
  JOURNAL   Nucleic Acids Res 42 (Database issue), D802-D809 (2014)
   PUBMED   24194600
REFERENCE   4  (bases 1 to 2744)
  AUTHORS   Pang,A.L., Taylor,H.C., Johnson,W., Alexander,S., Chen,Y., Su,Y.A.,
            Li,X., Ravindranath,N., Dym,M., Rennert,O.M. and Chan,W.Y.
  TITLE     Identification of differentially expressed genes in mouse
            spermatogenesis
  JOURNAL   J Androl 24 (6), 899-911 (2003)
   PUBMED   14581517
REFERENCE   5  (bases 1 to 2744)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CT025561.11 and AC113082.7.
            
            On Dec 2, 2008 this sequence version replaced NM_020586.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK135935.1, BC043693.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164131, SAMN01164135
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-962               CT025561.11        53546-54507         c
            963-1040            CT025561.11        35921-35998         c
            1041-1154           CT025561.11        33262-33375         c
            1155-1306           AC113082.7         213930-214081       c
            1307-1429           AC113082.7         202879-203001       c
            1430-1753           AC113082.7         199469-199792       c
            1754-1868           AC113082.7         198498-198612       c
            1869-2744           AC113082.7         197188-198063       c
FEATURES             Location/Qualifiers
     source          1..2744
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="9"
                     /map="9 10.25 cM"
     gene            1..2744
                     /gene="Herpud2"
                     /gene_synonym="5031400M07Rik"
                     /note="HERPUD family member 2"
                     /db_xref="GeneID:80517"
                     /db_xref="MGI:MGI:1915393"
     exon            1..962
                     /gene="Herpud2"
                     /gene_synonym="5031400M07Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             816..2030
                     /gene="Herpud2"
                     /gene_synonym="5031400M07Rik"
                     /codon_start=1
                     /product="homocysteine-responsive endoplasmic
                     reticulum-resident ubiquitin-like domain member 2 protein"
                     /protein_id="NP_065611.1"
                     /db_xref="CCDS:CCDS22934.1"
                     /db_xref="GeneID:80517"
                     /db_xref="MGI:MGI:1915393"
                     /translation="MDQSGMEIPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNV
                     YPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLVCASRSPPSSPKSSTDRG
                     SHEALASSTSSNSDHSDSTTPSPSQESLSLVTGSSEGLRQRTLSQAQTDPAQSHQFPY
                     VIQGNVDHQFPGQGVPPAFPVYPALSPLQMLWWQQMYAHQYYMQYQAAVSAQATSSAG
                     SAQRAASSPLNLAHVPGEEPPPAPNLVAQENGPMNENVQMNAQGGPVLNEEDLNRDWL
                     DWVYTFSRAAVLLSIVYFYSSFSRFIMVMGAMLLVYLHQAGWFPFRQEGGQQQAPNNV
                     DANNDGHNANNLELEEMERLMDDGLEDESGEDAGEDASAAQRPGLMASAWSFITTFFT
                     SLIPEGPPQVAN"
     exon            963..1040
                     /gene="Herpud2"
                     /gene_synonym="5031400M07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1041..1154
                     /gene="Herpud2"
                     /gene_synonym="5031400M07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1155..1306
                     /gene="Herpud2"
                     /gene_synonym="5031400M07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1307..1429
                     /gene="Herpud2"
                     /gene_synonym="5031400M07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1430..1753
                     /gene="Herpud2"
                     /gene_synonym="5031400M07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1754..1868
                     /gene="Herpud2"
                     /gene_synonym="5031400M07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1869..2744
                     /gene="Herpud2"
                     /gene_synonym="5031400M07Rik"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aacaatcccg ggcgctcgcg cggcgccgcg gcccagtccc cgccctcctg ctgctgccac
       61 ctgccgcctg gccgcgccgg cggggactgc ccagccgcct tcaggagggc aggccgcgtc
      121 tgccgccccg cgagaccagg agggctagcg ccgcggagca ggaagcgagc agccggcgga
      181 ggcgcggcgg cgccgggccg gccttgtttt cctcaggctc gctccgctct gagccgcagc
      241 ctcgcttgcc tcaggctcgc tctcggccgc ggccttcttt ccttcaggct cggtcgcggc
      301 cttgcttgtc ccaggcttgc tccccggccg cctccgtcct ctcttcaagc tcgctctgcg
      361 gccgttccca cctccttcca ggctcgctcc ccgccaccgc attcctcctc ctcctcccag
      421 gctcgctccc gggccgccgc ccctcagccg cccaggctgc gccggtgctc gcgtggggcc
      481 ttgttgcgtt tcagctcggg gtcgccgcag gggcggggcg ctgagcggtc tgccgcggcc
      541 tccccgggtc gtctgcccgc cttcctccgc agtccggagc ctggcggagc ccagacctgg
      601 cggggacagc tgcgcacccg gcccggcacc cagagcctgc cgccaccacc gccaccgtcc
      661 atcgttggta ccggcaatgg ccttcgtctc gcctgatgtg cttgtgactg atttggatcc
      721 ggaatattga gaactcactt ctgtccccat cccagccgtg gccgcccact ggactcaact
      781 gcagcgtcgc tagactgccc cattttgaga gcaccatgga ccaaagtggg atggagattc
      841 ctgtgactct catcattaaa gcaccgaatc agaaatacag tgaccagact attagctgct
      901 tcttgaactg gaccgtgggg aaactaaaaa cgcatctatc taacgtgtac cctagcaaac
      961 cattgacaaa ggaccagagg ttggtgtatt ctggcagact gcttcctgac catctgcagc
     1021 tgaaagacat cctcagaaaa caagatgagt atcatatggt tcatctagtc tgtgcttctc
     1081 ggagtcctcc cagttctcca aaatccagca ccgatagagg aagtcacgaa gcactggcat
     1141 ccagcaccag ctctaattca gaccattcgg attcaacaac tccatcaccc agtcaggaga
     1201 gtttgtcatt agttactggt tcttcagaag gattgagaca acgtaccctt tcacaagcac
     1261 agactgaccc agcccagagt catcagtttc catatgtaat ccaaggaaat gtggatcacc
     1321 agtttcctgg gcaaggtgtg ccccctgcgt tcccagtgta ccctgcgctc agcccactgc
     1381 agatgctgtg gtggcagcag atgtacgctc atcagtatta tatgcaatat caagctgcag
     1441 tttcagctca ggccacatca agtgccggct cagcccagcg tgctgcatca tcacctctaa
     1501 atttggcaca tgttcctgga gaagagcctc caccagctcc caacctagtg gcccaagaaa
     1561 atgggcccat gaatgagaat gttcaaatga atgcacaggg cggcccagtg ctgaatgaag
     1621 aagacttgaa ccgcgactgg ctggactggg tgtacacgtt ctcccgagct gccgtcctcc
     1681 tcagcatcgt atacttctat tcttctttca gtcggtttat catggtaatg ggagccatgc
     1741 tgctggttta tttacaccaa gctggatggt ttccgttcag gcaagaaggc ggtcagcaac
     1801 aagctcccaa caatgtggac gctaacaatg acgggcataa tgcaaacaat ctagaacttg
     1861 aagaaatgga gcgccttatg gatgatggac ttgaagatga gagtggagaa gatgcaggtg
     1921 aagatgccag tgcagctcaa aggcctgggt taatggcttc agcttggtct tttatcacca
     1981 ccttttttac ttcactaata ccagaggggc ctccccaagt tgccaattag acctaaaaaa
     2041 ctgtgccagc tgcaaaggag ggtttgactt taggaaagcg gtttaaataa cagtgcaatt
     2101 taaaaacaat gtataacttt ttttttgatg atcatgtaca gaggtctttt ctttaagctt
     2161 ctcatgcata tgaatatttt aagcacaaat ggactactaa gcttgtgatt tttctttctt
     2221 tgtttgttta aagagcctaa caacatagca ttgctaacag tactggtctt ccagctttat
     2281 tcatttcaat tatgtgtagt gcgccaagca gaaccactgt gtattatttc tttaaagagc
     2341 tgctacacct ttaaatgttc atagctagat ggccagccct tcaatgtgta ctttgaataa
     2401 atatatctat tttctgtgaa ttatcctgaa agttttaaac agaaatgacc tcatagtttt
     2461 taataaagtt tatttaccta aaatgtgcta gtagcatctt gcccacccat aaagcaataa
     2521 acttctcaaa aatattaatt ttgacatttg aataaatgat ggaaactttc tattttaagg
     2581 gcacatgtcc catcagttgg aattagtacc ttaagaggaa aaaaaaaaaa aggcagctct
     2641 tcattggaat taagtgatac aaaatgtttg atatggcaga acttttataa aatatgctgg
     2701 aaattgctcc ctgtaatttt ttaaataaag agtcaattat gata
//
