LOCUS       NM_144815               1925 bp    mRNA    linear   ROD 19-NOV-2024
DEFINITION  Mus musculus haloacid dehalogenase like hydrolase domain containing
            5 (Hdhd5), mRNA.
ACCESSION   NM_144815
VERSION     NM_144815.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1925)
  AUTHORS   Szakats,S., McAtamney,A., Cross,H. and Wilson,M.J.
  TITLE     Sex-biased gene and microRNA expression in the developing mouse
            brain is associated with neurodevelopmental functions and
            neurological phenotypes
  JOURNAL   Biol Sex Differ 14 (1), 57 (2023)
   PUBMED   37679839
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1925)
  AUTHORS   Footz,T.K., Brinkman-Mills,P., Banting,G.S., Maier,S.A.,
            Riazi,M.A., Bridgland,L., Hu,S., Birren,B., Minoshima,S.,
            Shimizu,N., Pan,H., Nguyen,T., Fang,F., Fu,Y., Ray,L., Wu,H.,
            Shaull,S., Phan,S., Yao,Z., Chen,F., Huan,A., Hu,P., Wang,Q.,
            Loh,P., Qi,S., Roe,B.A. and McDermid,H.E.
  TITLE     Analysis of the cat eye syndrome critical region in humans and the
            region of conserved synteny in mice: a search for candidate genes
            at or near the human chromosome 22 pericentromere
  JOURNAL   Genome Res 11 (6), 1053-1070 (2001)
   PUBMED   11381032
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BC014705.1.
            
            On Aug 10, 2004 this sequence version replaced NM_144815.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC014705.1, AK140387.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1925              BC014705.1         10-1934
FEATURES             Location/Qualifiers
     source          1..1925
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="FVB/N"
                     /db_xref="taxon:10090"
                     /chromosome="6"
                     /map="6 56.95 cM"
     gene            1..1925
                     /gene="Hdhd5"
                     /gene_synonym="A930002G03Rik; Cecr5"
                     /note="haloacid dehalogenase like hydrolase domain
                     containing 5"
                     /db_xref="GeneID:214932"
                     /db_xref="MGI:MGI:2136976"
     exon            1..133
                     /gene="Hdhd5"
                     /gene_synonym="A930002G03Rik; Cecr5"
                     /inference="alignment:Splign:2.1.0"
     CDS             8..1267
                     /gene="Hdhd5"
                     /gene_synonym="A930002G03Rik; Cecr5"
                     /note="cat eye syndrome critical region protein 5 homolog;
                     cat eye syndrome chromosome region, candidate 5 homolog"
                     /codon_start=1
                     /product="haloacid dehalogenase-like hydrolase
                     domain-containing 5 precursor"
                     /protein_id="NP_659064.1"
                     /db_xref="CCDS:CCDS20483.1"
                     /db_xref="GeneID:214932"
                     /db_xref="MGI:MGI:2136976"
                     /translation="MAALAGLGVLGAGRHLWKLPVRLSAGLQGCGPRRGYIAGSAERS
                     PTFGLLFDIDGVLVRGHRVIPAALEAFSKLVNSQGQLRVPVVFVTNAGNILQHNKAQE
                     LSDLLRCKVDPDQVILSHSPMKLFLQYHSKQMLVSGQGPLVENARALGFQNVVTIDEL
                     RLAFPELDMVDLQRRPKTMRLRSDFPAIEGVLLLGEPVRWETNLQLIMDVLLSNGHPG
                     TGLATAPYPHLPVLASNMDLLWMAEAKMPRFGHGTFLLCLETIYRKITGNELKYEGLM
                     GKPSILTYQYAEDVIRQQAERRGWAAPIRKLYAIGDNPMSDVYGANLFHQYLQMANRG
                     EEEQQTGGQQKQRPSATQSCASILVCTGIYSSQDPGSQVPPPGRRELPFHGHRDFSFS
                     PGLLEASHIVHDVNEAVQLVFHQEGWA"
     exon            134..337
                     /gene="Hdhd5"
                     /gene_synonym="A930002G03Rik; Cecr5"
                     /inference="alignment:Splign:2.1.0"
     exon            338..450
                     /gene="Hdhd5"
                     /gene_synonym="A930002G03Rik; Cecr5"
                     /inference="alignment:Splign:2.1.0"
     exon            451..544
                     /gene="Hdhd5"
                     /gene_synonym="A930002G03Rik; Cecr5"
                     /inference="alignment:Splign:2.1.0"
     exon            545..575
                     /gene="Hdhd5"
                     /gene_synonym="A930002G03Rik; Cecr5"
                     /inference="alignment:Splign:2.1.0"
     exon            576..750
                     /gene="Hdhd5"
                     /gene_synonym="A930002G03Rik; Cecr5"
                     /inference="alignment:Splign:2.1.0"
     exon            751..939
                     /gene="Hdhd5"
                     /gene_synonym="A930002G03Rik; Cecr5"
                     /inference="alignment:Splign:2.1.0"
     exon            940..1908
                     /gene="Hdhd5"
                     /gene_synonym="A930002G03Rik; Cecr5"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1883..1888
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Hdhd5"
                     /gene_synonym="A930002G03Rik; Cecr5"
                     /note="hexamer: ATTAAA"
     polyA_site      1908
                     /gene="Hdhd5"
                     /gene_synonym="A930002G03Rik; Cecr5"
                     /note="major polyA site"
ORIGIN      
        1 gggcgcgatg gctgcgctcg ccgggttagg ggttctcggc gccgggcgcc atctgtggaa
       61 actgcctgtg cgcctgtctg cggggctcca gggctgcggg ccccggaggg gctacatcgc
      121 gggcagcgct gagcgttctc ccacctttgg cttactgttc gacattgatg gagtgctggt
      181 tcgaggccac agagtgatcc cagctgctct ggaagcattc agcaagctgg taaactccca
      241 ggggcagctg agggtacctg tggtttttgt cacaaatgct gggaacatct tgcagcataa
      301 caaagcccag gaactgtcag acctgctgag gtgcaaggtg gatccagacc aagtcattct
      361 ctctcacagc cccatgaagc tcttcctgca gtaccacagc aaacagatgc tagtgtcggg
      421 gcaggggccc ctggtggaga acgccagagc actaggcttc cagaatgtgg tgacaataga
      481 tgagctgcgg ttagccttcc cagagctgga catggtggac cttcagcggc ggccgaagac
      541 catgcgcctg aggagtgact tccctgccat tgaaggggtc ctccttcttg gggagccagt
      601 ccgctgggag acaaacctgc agctgattat ggatgtcctt cttagtaacg gccaccccgg
      661 aactggcctg gcaacagctc cgtatcccca cctgcctgtt ctggctagca acatggacct
      721 cctgtggatg gctgaagcca agatgcccag gtttggtcat ggcacctttc tgctttgcct
      781 ggaaaccatc taccggaaaa taacaggcaa tgagctgaaa tacgagggtc tgatgggcaa
      841 acccagcatc cttacttacc agtatgcaga ggacgtgatc aggcagcagg ctgagaggcg
      901 gggctgggcc gcccccatca ggaagctgta tgctataggt gataacccta tgtctgatgt
      961 ctacggtgcc aacctattcc atcagtacct gcaaatggcc aatcgtggag aggaggaaca
     1021 gcagactggt gggcaacaga agcagcggcc ttcagcaacc cagagttgtg cttccatcct
     1081 ggtatgcact ggcatataca gttctcagga cccaggctcc caagtgcctc ctcctggaag
     1141 gagagagctt ccattccacg gacaccgaga cttcagcttc agtccagggc tcctagaagc
     1201 ctcccacatt gttcatgatg taaacgaagc tgtgcagctg gttttccacc aggagggttg
     1261 ggcttgaggg gacggagatg tagcagaggc agagggggct gttggagcat gcgctcaggg
     1321 aatcctgtgt gcccggctgt ggtctgggtc acaggcatca agtccaagcc tggcttcttg
     1381 ccattacttc ctgggacaga gaagactgta gcttcagtag ctacagaaag cccttggggc
     1441 agcatctcag gagaagggat ggatttctgg gcccttcctg tgcgtctctt gcagtctgac
     1501 ctcatgctgg tccctttacc tctgtgcctc agtgtcaggt cctctcagtg aggaccttct
     1561 ttttccagac agcgtctcac tattgtagtt cccgctgtcc tggaactcac tatgtagccc
     1621 aggttgtcct gaaactcaga tctgcctgcc tctgcctccc cagtgctggc atcaaaggtg
     1681 ggtgccatca cacctgcctc agtcaggact ttaaaaaccg cacagtgcaa cgttatgtgg
     1741 aaacttgtgg agggagagcc tttggtcaca ctgaaggaag cgctgtgcca tgccagggag
     1801 gggtgtggct ggcactctcc atagtgttta ctgtatttta gagtgctgcc cagagacttg
     1861 ggggcttttt tttttttttt taattaaaaa ctatcctaat atttgttaaa aaaaaaaaaa
     1921 aaaaa
//
