LOCUS       XM_006501446            1236 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus HCLS1 associated X-1 (Hax1), transcript
            variant X2, mRNA.
ACCESSION   XM_006501446
VERSION     XM_006501446.4
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000069.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Mar 27, 2024 this sequence was replaced by
            NM_001310681.2.
            
            On Sep 21, 2020 this sequence version replaced XM_006501446.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1236
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="3"
     gene            1..1236
                     /gene="Hax1"
                     /gene_synonym="HAX-1; Hs1bp1; HSP1BP-1; mHAX-1s; SIG-111;
                     Silg111"
                     /note="HCLS1 associated X-1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     mRNAs, 39 ESTs, 963 long SRA reads, 1 Protein, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 52 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:23897"
                     /db_xref="MGI:MGI:1346319"
     CDS             300..1064
                     /gene="Hax1"
                     /gene_synonym="HAX-1; Hs1bp1; HSP1BP-1; mHAX-1s; SIG-111;
                     Silg111"
                     /codon_start=1
                     /product="HCLS1-associated protein X-1 isoform X2"
                     /protein_id="XP_006501509.1"
                     /db_xref="GeneID:23897"
                     /db_xref="MGI:MGI:1346319"
                     /translation="MTRDDDDDDDDDDEAEEDRGAWGRESYAFDGSQPPEEFGFSFSP
                     RGGMRFHGNFGFDDLVRDFNSIFSEMGAWTLPSHSPELPGPESETPGERLREGQTLRD
                     SMLKYPDSHQPRIFEGVLESHAKPESPKPAPDWGSQGPFHRLDDTWPVSPHSRAKEDK
                     DLDSQVSQEGLGPLLQPQPKSYFKSISVTKITKPDGTVEERRTVVDSEGRRETTVTHQ
                     EAHDSSRSDPDSQRSSALDDPFSILDLLLGRWFRSR"
ORIGIN      
        1 ggttgctttc cggcagcgaa cgctgagccc tggctatatc cgacagggta gcgtaagctg
       61 gtcgtggtct cgtgttgccc atgggctgca gagcttcaaa gtttctagtg cccctactgg
      121 aatgagcgtc tttgatcttt tccgaggctt tttcggcttt cctggacctc ggagctgccc
      181 agacccctct ttggcccagt ttgctgccct tgtgttgatt tttatggctt agacagtgtt
      241 gaagtcttcg tggcttattt gccttcactc tcagccacag agatcctttt tttggaggga
      301 tgactcgaga tgatgacgac gatgatgatg atgatgacga agcggaggaa gacagaggcg
      361 cgtggggtcg agagagctat gcgtttgatg gttctcagcc tccagaggaa ttcggtttca
      421 gcttcagccc caggggaggg atgcgattcc acggcaactt tggctttgat gatctagtac
      481 gagattttaa tagcatcttc agcgagatgg gggcctggac cttgccttcc cactctcctg
      541 aacttccagg tcctgagtca gaaacacctg gtgagagact gcgggagggg cagacactac
      601 gagactcaat gcttaagtac ccagatagtc accaacccag gatctttgag ggggtcttgg
      661 agagtcatgc aaaacctgaa tccccaaaac cagctccaga ttgggggtcg cagggacctt
      721 ttcataggtt ggatgataca tggcctgtga gtccccattc tagagccaaa gaggacaaag
      781 atcttgactc ccaggtttcc caggaaggtc tgggtccact tcttcaaccc cagcccaaat
      841 cgtatttcaa aagtatctct gtgaccaaga tcactaagcc agatgggaca gtggaggaac
      901 gccgcactgt ggtagacagt gagggccgga gggagaccac agtgacccat caagaagccc
      961 atgacagttc cagaagtgat ccagactctc agagatcttc agctttggat gatccctttt
     1021 ccattctgga tttgctacta ggacgttggt ttcggtcccg atagcgttct taaacagagg
     1081 ccttcaggtc cttcccactc ccttcctgtt gcccattgcc aataagctta gctctgtctg
     1141 tcatcccagg gtcttaaatg tgtgaaacaa ttaattgagc ttatgccagt ctgtcattca
     1201 tccaaattga ccaataaagc ctttatttat gctaaa
//
