LOCUS       NM_178724               2419 bp    mRNA    linear   ROD 01-JUN-2024
DEFINITION  Mus musculus harbinger transposase derived 1 (Harbi1), transcript
            variant 1, mRNA.
ACCESSION   NM_178724
VERSION     NM_178724.5
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2419)
  AUTHORS   Cobellis,G., Nicolaus,G., Iovino,M., Romito,A., Marra,E.,
            Barbarisi,M., Sardiello,M., Di Giorgio,F.P., Iovino,N., Zollo,M.,
            Ballabio,A. and Cortese,R.
  TITLE     Tagging genes with cassette-exchange sites
  JOURNAL   Nucleic Acids Res 33 (4), e44 (2005)
   PUBMED   15741177
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2419)
  AUTHORS   Kapitonov,V.V. and Jurka,J.
  TITLE     Harbinger transposons and an ancient HARBI1 gene derived from a
            transposase
  JOURNAL   DNA Cell Biol 23 (5), 311-324 (2004)
   PUBMED   15169610
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY131507.1 and BC094315.1.
            
            On Oct 6, 2017 this sequence version replaced NM_178724.4.
            
            Transcript Variant: This variant (1) represents the longest
            transcript and encodes the longer isoform (a). Variants 1 and 2
            both encode the same isoform (a).
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC094315.1, AK147045.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849380, SAMN00849381
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-98                BY131507.1         3-100
            99-2419             BC094315.1         1-2321
FEATURES             Location/Qualifiers
     source          1..2419
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="2"
                     /map="2 50.63 cM"
     gene            1..2419
                     /gene="Harbi1"
                     /gene_synonym="D230010M03Rik"
                     /note="harbinger transposase derived 1"
                     /db_xref="GeneID:241547"
                     /db_xref="MGI:MGI:2443194"
     exon            1..400
                     /gene="Harbi1"
                     /gene_synonym="D230010M03Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            401..1186
                     /gene="Harbi1"
                     /gene_synonym="D230010M03Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1187..2399
                     /gene="Harbi1"
                     /gene_synonym="D230010M03Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1887..1892
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Harbi1"
                     /gene_synonym="D230010M03Rik"
                     /note="hexamer: AAGAAA"
     polyA_site      1906
                     /gene="Harbi1"
                     /gene_synonym="D230010M03Rik"
     regulatory      2382..2387
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Harbi1"
                     /gene_synonym="D230010M03Rik"
                     /note="hexamer: AATAAA"
     polyA_site      2399
                     /gene="Harbi1"
                     /gene_synonym="D230010M03Rik"
                     /note="major polyA site"
ORIGIN      
        1 gcggaagggg aggtgcggct gttgcgcacc gtggcggctt gtgtgcggcc gtgggttccg
       61 gaggcgggcc ttcttcggcc ccgagggtgg agagtgctcc ggttaatccg gtagctacgg
      121 aaaggtggcg atcagcgttc ggttattctg ggtcgagcag ccagactttg gttatcttac
      181 tatttttgag acaaggtctc gctgtgtaac tcaggttagc tttgaacgta atgtagctcc
      241 agcaggcatg gagcacgcgg cgatgctacc cagtttccag aatgctaaca ttacaggctg
      301 gaccagcctt aggagctttt tgttttgttt tactttgttt tgactggtgc tcgtagtcca
      361 cgcttgcctc gcacatgatc ttctggtcta cacttcccaa aaagaagatt ataaatgtca
      421 gagccattta actgatggtt agctgttgaa ttctgatact tactgcgctg ggaaaaattc
      481 gggaaaagca gatagaagag gacctccaca ttagcaatgg ctattccaat aacagtgctt
      541 gactgtgatc tcttgctgta tggccgaggt caccggacct tggaccgttt taagctggat
      601 gatgtgactg acgaatactt gatgtccatg tatggattcc cccgacaatt catatacttc
      661 ttagtggaac tcttgggggc aagcctttct cggcctactc agagatctag ggctattagc
      721 cctgagacac agatcctggc agcattaggg ttttatacct cagggtcctt ccagactcgg
      781 atgggagatg caattggaat tagccaggcc tctatgagtc gctgcgttgc aaatgtcact
      841 gaagcccttg tggaacgggc ctcacagttt attcactttc cagttgatga agctgccgta
      901 cagtctctaa aggacgaatt ctatggattg gcagggatgc caggggtgat aggggtggct
      961 gactgtatcc atgtagcaat caaggcacca aatgcggaag acctctctta cgtgaaccga
     1021 aagggtctgc attctctaaa ctgcctggtg gtgtgtgaca tcagaggggc actgatgact
     1081 gtggagacaa gctggccagg tagcctccag gactgtgctg tgctacagcg gtcttcttta
     1141 accagtcagt ttgaaactgg gatgcccaaa gatagctggc ttcttggtga cagttccttc
     1201 tttctccgat cctggctctt gacaccacta cccattcctg aaactgcagc ggagtatcgc
     1261 tacaataggg ctcattctgc aactcacagt gtgattgaga ggacgttgca gaccctctgc
     1321 tgtaggttcc ggtgcctgga cggatccaaa ggggcactgc agtactcacc ggagaaatgc
     1381 agccacatca tcttagcttg ctgtgtcctt cacaacattt ccctggacca tggcatggat
     1441 gtttggtcct ctccagtgcc tggacccatt gaccagcccc ctgaggggga ggatgagcac
     1501 atggagtctc tggacttaga ggctgacagg atccggcagg agctgatact cactcatttc
     1561 agttagaatg agggtagagg gaggaggaag gctttccaga ataaaccgac aatttccccc
     1621 cttattagca ctgggcagat cagtcatcca gtgctactga atgtgtgcac ttgtcataaa
     1681 ttttttaaag tttcaggagg gcaggtgcaa gggcagatgt gtcaactaga ccaaaatcaa
     1741 gacagtgttt ccctaatgtt cagtgaaccc caggctgtgc actgttcttt ggaaagttca
     1801 ctagttgtaa gaaaaaaatc acacaatgaa ggagaaaaca gcatacagcc aaagagtttt
     1861 gttgtttcag ttgtctggag atctcaaaga aaagtgtttg tcctgattga tttatttact
     1921 catttattgc tagtttgtgt gagacagttt tttatatagc acaggctgtc ctggtactca
     1981 ctgtgtagcc caggttggcc tggagcttgt aacagttctc ctgcttcagc ctctcaaata
     2041 ctggtctacg ctatcctgcc tggtgccctg agtctttgtt tttcttcttt gctatctaca
     2101 taggcaaata gaaagaatga atgaatttaa ttgagaaatg atctaatata agtaagtgag
     2161 cacttgccta gcatgtgtga tgtattgatc cctagaactg aaagaaagaa acagtaaaac
     2221 taaagagaag ggctggagag atgtctcagt agttaagagc actgactgct cttccagcac
     2281 tgtatggtgg ctcacagcca tctgtaatgg gatacagtgc cctcttctgg tgtgtctgag
     2341 gacagcaaca gtatacaaac acacaaaata aatctttcaa aaataaaaaa aaagaactaa
     2401 aaaaaaaaaa aaaaaaaaa
//
