LOCUS       NM_025760               1053 bp    mRNA    linear   ROD 01-JUN-2024
DEFINITION  Mus musculus 3-hydroxyacyl-CoA dehydratase 4 (Hacd4), transcript
            variant 2, mRNA.
ACCESSION   NM_025760
VERSION     NM_025760.5
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1053)
  AUTHORS   Ahuja,N., Hiltabidle,M.S., Rajasekhar,H., Voss,S., Lu,S.Z.,
            Barlow,H.R., Cowdin,M.A., Daniel,E., Vaddaraju,V., Anandakumar,T.,
            Black,E., Cleaver,O. and Maynard,C.
  TITLE     Endothelial Cyp26b1 restrains murine heart valve growth during
            development
  JOURNAL   Dev Biol 486, 81-95 (2022)
   PUBMED   35364055
REFERENCE   2  (bases 1 to 1053)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1053)
  AUTHORS   Blondelle,J., Ohno,Y., Gache,V., Guyot,S., Storck,S.,
            Blanchard-Gutton,N., Barthelemy,I., Walmsley,G., Rahier,A.,
            Gadin,S., Maurer,M., Guillaud,L., Prola,A., Ferry,A.,
            Aubin-Houzelstein,G., Demarquoy,J., Relaix,F., Piercy,R.J.,
            Blot,S., Kihara,A., Tiret,L. and Pilot-Storck,F.
  TITLE     HACD1, a regulator of membrane composition and fluidity, promotes
            myoblast fusion and skeletal muscle growth
  JOURNAL   J Mol Cell Biol 7 (5), 429-440 (2015)
   PUBMED   26160855
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL772316.6.
            
            On Dec 13, 2019 this sequence version replaced NM_025760.4.
            
            Transcript Variant: This variant (2), as well as variants 1 and 3,
            encodes isoform a.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC020155.1, AK048282.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-83                AL772316.6         50982-51064         c
            84-187              AL772316.6         49609-49712         c
            188-315             AL772316.6         47088-47215         c
            316-428             AL772316.6         38885-38997         c
            429-535             AL772316.6         35140-35246         c
            536-661             AL772316.6         31848-31973         c
            662-1053            AL772316.6         26104-26495         c
FEATURES             Location/Qualifiers
     source          1..1053
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="4"
                     /map="4 41.73 cM"
     gene            1..1053
                     /gene="Hacd4"
                     /gene_synonym="4933428I03Rik; Hcad4; Ptplad2"
                     /note="3-hydroxyacyl-CoA dehydratase 4"
                     /db_xref="GeneID:66775"
                     /db_xref="MGI:MGI:1914025"
     exon            1..83
                     /gene="Hacd4"
                     /gene_synonym="4933428I03Rik; Hcad4; Ptplad2"
                     /inference="alignment:Splign:2.1.0"
     exon            84..187
                     /gene="Hacd4"
                     /gene_synonym="4933428I03Rik; Hcad4; Ptplad2"
                     /inference="alignment:Splign:2.1.0"
     exon            188..315
                     /gene="Hacd4"
                     /gene_synonym="4933428I03Rik; Hcad4; Ptplad2"
                     /inference="alignment:Splign:2.1.0"
     exon            316..428
                     /gene="Hacd4"
                     /gene_synonym="4933428I03Rik; Hcad4; Ptplad2"
                     /inference="alignment:Splign:2.1.0"
     exon            429..535
                     /gene="Hacd4"
                     /gene_synonym="4933428I03Rik; Hcad4; Ptplad2"
                     /inference="alignment:Splign:2.1.0"
     exon            536..661
                     /gene="Hacd4"
                     /gene_synonym="4933428I03Rik; Hcad4; Ptplad2"
                     /inference="alignment:Splign:2.1.0"
     exon            662..1053
                     /gene="Hacd4"
                     /gene_synonym="4933428I03Rik; Hcad4; Ptplad2"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1030..1035
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Hacd4"
                     /gene_synonym="4933428I03Rik; Hcad4; Ptplad2"
                     /note="hexamer: AGTAAA"
     polyA_site      1053
                     /gene="Hacd4"
                     /gene_synonym="4933428I03Rik; Hcad4; Ptplad2"
                     /note="major polyA site"
ORIGIN      
        1 actcctgctg cttcccggag gtgccagagg agcagactgt ggcccatggg gccctcggtg
       61 ctgccagcct ggctgcagcc caggtatagg aagaatgtat atcttttcat ctattactta
      121 attcagttct gtggccactc atggatactg gcaaatatga cagtcagatt cttctcattt
      181 gggaaagatt ccatggccga cacgttttac gctattgggt tagttatgcg ggtttgccaa
      241 tccatttccc ttttggaact tctgcacatt tacattggca ttgagtcgaa tcagcttttc
      301 ccacggtttt tgcagctcac agagagagtg atcattctct ttggggtgat caccagtcaa
      361 gaggaggtcc aagagaaatg tgtagtgtgt gttttattca tcctttggaa tctactggat
      421 atggtaaggt acacttacag catgctgtca gtcataggga catcttatgc tgccttgaca
      481 tggctcagtc aaacactctg gatgccaatt taccctctgt gtgttcttgc tgaagcattc
      541 accatctatc agtcactgcc ttattttgag tcatttggta caaactccac cgtgcttccg
      601 ttcgacctat ctacctgttt cccttatgtg ctgaagctgt acctcatgat gctcttcata
      661 ggtatgtatt tcacctacag ccatctttat acagaaagaa aagacttcct ccgagttttt
      721 tctgtcaaac agaagaacgt gtgaggtagc ctgtcgaaca ggtgagaaga tggactggtg
      781 gtctaagctg cagcaaatac aacactgggc atctgctagc gaaaaaaaaa aacatagaac
      841 tggacaaaaa aaaaaaaaaa atctactgtg gtcccgtgtt ctaaagctcc tgagctttaa
      901 gaacaaatcc ccaaaggtgc agcagacact gcttcaccag ggccgcgggc tttatacaag
      961 ttacatttat aatgagtttg aaaactctga atgttttcct gtaatgttaa tgagagatag
     1021 attcactgga gtaaattcaa ttgacttgag aaa
//
