LOCUS       XM_006512485            3024 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus histocompatibility 60c (H60c), transcript
            variant X1, mRNA.
ACCESSION   XM_006512485
VERSION     XM_006512485.4
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000076.7) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Aug 8, 2019 this sequence version replaced XM_006512485.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3024
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="10"
     gene            1..3024
                     /gene="H60c"
                     /gene_synonym="4632413I24Rik; 670558; Gm9491"
                     /note="histocompatibility 60c; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 9 long
                     SRA reads, 4 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 4 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:670558"
                     /db_xref="MGI:MGI:3774845"
     CDS             149..991
                     /gene="H60c"
                     /gene_synonym="4632413I24Rik; 670558; Gm9491"
                     /codon_start=1
                     /product="histocompatibility antigen 60c isoform X1"
                     /protein_id="XP_006512548.1"
                     /db_xref="GeneID:670558"
                     /db_xref="MGI:MGI:3774845"
                     /translation="MGKSTNTPSSTWLGGETDTPISPPRCSHQFLPQPASDPSRRHQF
                     YCSFLLLILMVSGHCSHACLQLAPVIEGNARNAGNALLVMALLLLILESCSAGTYALN
                     CKLTVKYRTLQGLCSVNGKTFLDFGDENHEGNATMLCPALYQSLTDISEVMWSLQSGN
                     DALNVTTRSQYYQGEFIDGFWDINTDEQHSIYVYPLNKTWRESHSDNSSAMEQWKNKN
                     LEKDIRNVLMVDFSCCLNKSSPHFREMPTLPTTAAHVDQPRSMACKSSPFDGLIMILL
                     IYIL"
ORIGIN      
        1 aggaatgaca cccaaggaaa actctggact ccacgaacac ttttcctaag gtcttggctt
       61 ttccaagtca cggtgtatac tgggaatgca cagcgctgct aaaaatgact atgcaatttc
      121 gggctaggag gtaggaggaa ggaatggcat ggggaagagc acaaacactc caagctccac
      181 ctggctgggt ggggagacag acacacctat ttctccccca cggtgcagcc accagtttct
      241 ccctcagcct gccagcgatc ccagcagaag gcatcaattt tattgttcgt tcctgcttct
      301 gatattgatg gtctctgggc actgcagtca cgcctgcctt cagctggctc cagtcatcga
      361 aggcaatgct cgcaatgctg gcaatgctct gcttgttatg gctctacttc tcttgatcct
      421 ggagtcctgt agtgcaggca catatgccct aaattgcaaa ctcactgtca agtatcgtac
      481 tctacaagga ctgtgctcag tgaatggaaa gactttcctt gattttggtg atgaaaacca
      541 tgagggaaat gccactatgc tgtgtcctgc tttataccaa agcctgacag atatttcaga
      601 agtaatgtgg agcctgcaat caggtaatga tgccttgaat gtcacaacaa gatctcagta
      661 ttatcaagga gaattcattg atggattctg ggacatcaac actgatgaac agcatagcat
      721 ctacgtttat ccacttaata agacctggag agaaagtcat tctgataaca gcagtgccat
      781 ggagcagtgg aagaacaaga acctagaaaa agatatcagg aatgtcctca tggtagattt
      841 cagttgctgc ctcaacaaat cgtcgccaca ctttagagaa atgccaacct tgccaaccac
      901 tgctgcacat gtggaccagc ctcgatccat ggcatgcaag tccagcccct ttgatgggtt
      961 gataatgata ttgctcatct acatcctcta gcgtgttttc taaggagaat tcttgacaga
     1021 gacagggtga agatgctcca gagaaagtcg tgacaattca tcgggtgcag ccactgcccc
     1081 ttttcgtcat cctcaacata tgactcatca tgctacagac atagtatttc aaggcctttc
     1141 cactgtgtgc taggcactgt ggcccttgct aatcacaggt tcctttttct ctgggtgatt
     1201 tgtccataac atgcaattac ttgatctaga gatttggaaa aaatatattt atgtatccat
     1261 accaaccata aaaaaaacaa caagaacaga ataatcaaat ctctttagtg ggagtgtgaa
     1321 gtctttactc ctgtataatc catcagtgtc tatgtaattc tgagactgtc taggagaagc
     1381 ctgcacaagg caatgttctc tataccatca atgaaaaata gatatatgcg ccattttata
     1441 tgactatata tgatagaaaa aaaactactt tataacataa ggtgaaagtt tttattatta
     1501 ttactattat aggttagttt gtgtgataag cactaagtag cccagccatg gccacatgta
     1561 cactggtgca gcagagaact tggaacctgc tctgtccgac aggctggttg cccctgcagt
     1621 ggcaatctgg cagtgaaatc tggaaggtcc tgggcagctg tcactactga gtccacaccc
     1681 tctgatgcag gttctgggtc agtgttgctt tcccctgtgc tgagagcatc ttctttgtgc
     1741 acatacagaa gctgtggtac aggagagtga actcacgatt gttctctctg acctcggcat
     1801 aggcactttt gcacaagtgc actagcactc acacatccta aaaacgtgga gattgtagag
     1861 tgtttgttca ctgttgaaat actgtgtttt ttgaagcaag gtctcactct gtagacaagg
     1921 ctggcctgga cctcacagaa aaacaccttg ccagcattaa gcttaaagac gtgtgtcacc
     1981 atgcctgagt gatcacagga ttttaagctc taatggtgtg ctactcaagt attagagatt
     2041 taaaattgtc tttttcacac agacggtcat gtttctgaga atgggtgctc cctattaatt
     2101 tgtgaacttt agtggcactg agttgatggg tattattatg tatctgagga atcactaaag
     2161 ggatctaagc ctaggaaaca gaaattgagg agtgtttgtt tagtagaagt aaatggtaac
     2221 tacatcaggt ccccagacct tagcacaact gactccattg tggaagtgtt attcaggctg
     2281 taaaactcag cacacagaca tcacctacag ccaaaatgaa aacaaagacc tcatccacca
     2341 aagtccatgg ttctgagatg tctctaattg caacaacttt gctctttggc ttttgtagtt
     2401 ctgcttctga ctaacttcct ggcaactgaa gtatatcaac ccagaatggt ttttgtgctt
     2461 aaaagatctc cctggttaaa gctccattct atactggaac gccaaaaatt tagaataatc
     2521 agggccagct aataaagagt ttctattggc ttaaatacca ttgttcgggg agttaggtag
     2581 tggaggaagc acggaaggga gactgcaaac aggaaataaa gtaattaatc taaaaaacat
     2641 cggagcattc ttcttggctg aattccccta gaacagcaat gtcctttctg cagtttcctt
     2701 actagaaggc tcttaccgct ggctctggat gtctaactgc tgacttgtat ctttaaatgg
     2761 atctctctct ctttagacgt ttgctaactt tcttcaggtg attggttttc aggtgttcag
     2821 gttcctgcga atgggtgctg tctgtattat acaatgtgta cttgaaattt tcataatatt
     2881 ttcagagtat tctattgtaa ttatattacc ttacaagatt tgtggggctt ctctttgatt
     2941 tgtgattaca cagttttagt atattttgtg ttctttagtc agactatgca attgtctatg
     3001 aagttcagta aacttttgaa aaaa
//
