LOCUS       NM_178218                508 bp    mRNA    linear   ROD 02-JUL-2024
DEFINITION  Mus musculus H2A clustered histone 25 (H2ac25), mRNA.
ACCESSION   NM_178218
VERSION     NM_178218.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 508)
  AUTHORS   Li,Y., Xiao,D., Chen,H., Zheng,X.F.S. and Xiang,M.
  TITLE     Maf1 controls retinal neuron number by both RNA Pol III- and Pol
            II-dependent mechanisms
  JOURNAL   iScience 26 (12), 108544 (2023)
   PUBMED   38089586
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 508)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 508)
  AUTHORS   Li,Z., Li,Y. and Jiao,J.
  TITLE     Neural progenitor cells mediated by H2A.Z.2 regulate microglial
            development via Cxcl14 in the embryonic brain
  JOURNAL   Proc Natl Acad Sci U S A 116 (48), 24122-24132 (2019)
   PUBMED   31712428
REFERENCE   4  (bases 1 to 508)
  AUTHORS   Cheverud,J.M., Lawson,H.A., Bouckaert,K., Kossenkov,A.V.,
            Showe,L.C., Cort,L., Blankenhorn,E.P., Bedelbaeva,K.,
            Gourevitch,D., Zhang,Y. and Heber-Katz,E.
  TITLE     Fine-mapping quantitative trait loci affecting murine external ear
            tissue regeneration in the LG/J by SM/J advanced intercross line
  JOURNAL   Heredity (Edinb) 112 (5), 508-518 (2014)
   PUBMED   24569637
REFERENCE   5  (bases 1 to 508)
  AUTHORS   Miller,J.A., Nathanson,J., Franjic,D., Shim,S., Dalley,R.A.,
            Shapouri,S., Smith,K.A., Sunkin,S.M., Bernard,A., Bennett,J.L.,
            Lee,C.K., Hawrylycz,M.J., Jones,A.R., Amaral,D.G., Sestan,N.,
            Gage,F.H. and Lein,E.S.
  TITLE     Conserved molecular signatures of neurogenesis in the hippocampal
            subgranular zone of rodents and primates
  JOURNAL   Development 140 (22), 4633-4644 (2013)
   PUBMED   24154525
REFERENCE   6  (bases 1 to 508)
  AUTHORS   Sanchez-Molina,S., Oliva,J.L., Garcia-Vargas,S., Valls,E.,
            Rojas,J.M. and Martinez-Balbas,M.A.
  TITLE     The histone acetyltransferases CBP/p300 are degraded in NIH 3T3
            cells by activation of Ras signalling pathway
  JOURNAL   Biochem J 398 (2), 215-224 (2006)
   PUBMED   16704373
REFERENCE   7  (bases 1 to 508)
  AUTHORS   Ancelin,K., Lange,U.C., Hajkova,P., Schneider,R., Bannister,A.J.,
            Kouzarides,T. and Surani,M.A.
  TITLE     Blimp1 associates with Prmt5 and directs histone arginine
            methylation in mouse germ cells
  JOURNAL   Nat Cell Biol 8 (6), 623-630 (2006)
   PUBMED   16699504
REFERENCE   8  (bases 1 to 508)
  AUTHORS   Fang,J., Chen,T., Chadwick,B., Li,E. and Zhang,Y.
  TITLE     Ring1b-mediated H2A ubiquitination associates with inactive X
            chromosomes and is involved in initiation of X inactivation
  JOURNAL   J Biol Chem 279 (51), 52812-52815 (2004)
   PUBMED   15509584
REFERENCE   9  (bases 1 to 508)
  AUTHORS   de Napoles,M., Mermoud,J.E., Wakao,R., Tang,Y.A., Endoh,M.,
            Appanah,R., Nesterova,T.B., Silva,J., Otte,A.P., Vidal,M.,
            Koseki,H. and Brockdorff,N.
  TITLE     Polycomb group proteins Ring1A/B link ubiquitylation of histone H2A
            to heritable gene silencing and X inactivation
  JOURNAL   Dev Cell 7 (5), 663-676 (2004)
   PUBMED   15525528
REFERENCE   10 (bases 1 to 508)
  AUTHORS   Marzluff,W.F., Gongidi,P., Woods,K.R., Jin,J. and Maltais,L.J.
  TITLE     The human and mouse replication-dependent histone genes
  JOURNAL   Genomics 80 (5), 487-498 (2002)
   PUBMED   12408966
COMMENT     REVIEWED REFSEQ: This record has been curated by NCBI staff. The
            reference sequence was derived from AL662809.14.
            
            On Mar 6, 2014 this sequence version replaced NM_178218.3.
            
            Summary: Histones are basic nuclear proteins that are responsible
            for the nucleosome structure of the chromosomal fiber in
            eukaryotes. Nucleosomes consist of approximately 146 bp of DNA
            wrapped around a histone octamer composed of pairs of each of the
            four core histones (H2A, H2B, H3, and H4). The chromatin fiber is
            further compacted through the interaction of a linker histone, H1,
            with the DNA between the nucleosomes to form higher order chromatin
            structures. This gene is intronless and encodes a
            replication-dependent histone that is a member of the histone H2A
            family. [provided by RefSeq, Aug 2015].
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript is intronless :: AK051448.1, AK087537.1 [ECO:0000345]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria        :: based on single protein-coding
                                             transcript
            replication-dependent histone :: PMID: 12408966
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-508               AL662809.14        39157-39664
FEATURES             Location/Qualifiers
     source          1..508
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="11"
                     /map="11 36.38 cM"
     gene            1..508
                     /gene="H2ac25"
                     /gene_synonym="H2aw; Hist3h2a"
                     /note="H2A clustered histone 25"
                     /db_xref="GeneID:319162"
                     /db_xref="MGI:MGI:2448458"
     exon            1..508
                     /gene="H2ac25"
                     /gene_synonym="H2aw; Hist3h2a"
                     /inference="alignment:Splign:2.1.0"
     CDS             54..446
                     /gene="H2ac25"
                     /gene_synonym="H2aw; Hist3h2a"
                     /note="histone 3, H2a; histone cluster 3, H2a; H2A.W
                     histone"
                     /codon_start=1
                     /product="histone H2A type 3"
                     /protein_id="NP_835736.1"
                     /db_xref="CCDS:CCDS24755.1"
                     /db_xref="GeneID:319162"
                     /db_xref="MGI:MGI:2448458"
                     /translation="MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYSERV
                     GAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVT
                     IAQGGVLPNIQAVLLPKKTESHHKAKGK"
ORIGIN      
        1 gttttcgcta ggtttctttt ctgtttttgc gtacttttgg ttatcagtgg aagatgtctg
       61 gtcgtggcaa gcagggcggc aaagctcgtg caaaagcgaa gtctcgttct tcccgtgccg
      121 gcctgcagtt tccagtgggc cgtgtgcacc gccttctccg taagggtaat tattcggagc
      181 gggtcggcgc tggtgccccg gtgtacctgg cggctgtgct agaatatctg actgctgaga
      241 tcctggaatt ggctggtaat gcggcccgcg acaataagaa gacgcgaatc atcccgcgcc
      301 acctgcagtt ggccatccgc aacgacgagg agctcaacaa gctgctgggc cgcgtgacca
      361 tcgcgcaggg cggcgtcctg cccaacatcc aggccgtgct actgcccaag aagaccgaga
      421 gccaccacaa ggccaagggc aagtgaggcc cctaccggtc gttagtgcga cttttacaga
      481 caccaaaggc tcttttcaga gccaccca
//
