LOCUS       NM_001177467             899 bp    mRNA    linear   ROD 29-AUG-2023
DEFINITION  Mus musculus histocompatibility-2, T region locus 25 (H2-T25),
            mRNA.
ACCESSION   NM_001177467 XR_034252 XR_034810
VERSION     NM_001177467.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 899)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 899)
  AUTHORS   Ohtsuka M, Inoko H, Kulski JK and Yoshimura S.
  TITLE     Major histocompatibility complex (Mhc) class Ib gene duplications,
            organization and expression patterns in mouse strain C57BL/6
  JOURNAL   BMC Genomics 9, 178 (2008)
   PUBMED   18416856
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 899)
  AUTHORS   Brorson KA, Hunt SW 3rd, Hunkapiller T, Sun YH, Cheroutre H,
            Nickerson DA and Hood L.
  TITLE     Comparison of exon 5 sequences from 35 class I genes of the BALB/c
            mouse
  JOURNAL   J Exp Med 170 (6), 1837-1858 (1989)
   PUBMED   2584927
REFERENCE   4  (bases 1 to 899)
  AUTHORS   Rogers,J.H.
  TITLE     Family organization of mouse H-2 class I genes
  JOURNAL   Immunogenetics 21 (4), 343-353 (1985)
   PUBMED   3997208
COMMENT     PREDICTED REFSEQ: This record has not been reviewed and the
            function is unknown. The reference sequence was derived from
            CT030728.6.
            
            [WARNING] On Sep 22, 2023 this sequence was replaced by
            NM_001177467.2.
            
            On or before Apr 11, 2010 this sequence version replaced
            XR_034810.1, XR_034252.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AB267093.2 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849377, SAMN00849380
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-86                CT030728.6         125282-125367
            87-87               CT030728.6         125543-125543
            88-356              CT030728.6         125544-125812
            357-358             CT030728.6         125967-125968
            359-623             CT030728.6         125969-126233
            624-899             CT030728.6         126823-127098
FEATURES             Location/Qualifiers
     source          1..899
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="17"
                     /map="17 18.94 cM"
     gene            1..899
                     /gene="H2-T25"
                     /gene_synonym="Gm7030; H2-t9"
                     /note="histocompatibility-2, T region locus 25"
                     /db_xref="GeneID:630294"
                     /db_xref="MGI:MGI:1890744"
     exon            1..86
                     /gene="H2-T25"
                     /gene_synonym="Gm7030; H2-t9"
                     /inference="alignment:Splign:2.1.0"
     CDS             11..868
                     /gene="H2-T25"
                     /gene_synonym="Gm7030; H2-t9"
                     /note="MHC class Ib T9"
                     /codon_start=1
                     /product="uncharacterized protein LOC630294 precursor"
                     /protein_id="NP_001170938.1"
                     /db_xref="CCDS:CCDS50101.1"
                     /db_xref="GeneID:630294"
                     /db_xref="MGI:MGI:1890744"
                     /translation="MGTLTSCPLLLLLLATALAPTRAGKSSHSLRYFATAMSRPGLGE
                     PRFTAVGYVDDTQFMRFDSDSENPRAEPCKPWVEQMEPEYWEQETRKFKEHTQNFRTC
                     LYNLLHLYNQSQDGPHTIQDMHGCYVGPDGQFLHGHYQHAYDGHDYITLNEDLSSWTA
                     ADAVAQITQHKWEEAGVAEEYKAYLEGTCVETLHRLLEEAQQHSDPPNTHVTRHPRPE
                     GEVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGTFQKWAAVVVPFGEE
                     PRYTCHVYH"
     exon            87..356
                     /gene="H2-T25"
                     /gene_synonym="Gm7030; H2-t9"
                     /inference="alignment:Splign:2.1.0"
     exon            357..623
                     /gene="H2-T25"
                     /gene_synonym="Gm7030; H2-t9"
                     /inference="alignment:Splign:2.1.0"
     exon            624..899
                     /gene="H2-T25"
                     /gene_synonym="Gm7030; H2-t9"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctatcccagg atggggaccc ttacgagttg ccctctactt ctcctgctgc tggcgaccgc
       61 cctggccccg acccgagcgg gcaagagctc acactcgctg cggtatttcg ccactgccat
      121 gtccaggcca ggcttagggg agccccggtt caccgccgtg ggttacgtgg acgacacaca
      181 gttcatgcgc ttcgacagcg actctgagaa tcccagggcc gagccatgca agccatgggt
      241 ggaacagatg gagcccgaat attgggagca ggagacgcgg aaattcaagg agcacaccca
      301 gaatttccga acttgccttt acaacctact ccacctgtac aaccagagtc aggacggtcc
      361 ccacactatc caggatatgc acggatgcta cgtgggacca gatggtcagt tcctacacgg
      421 gcactatcaa catgcctatg atggccacga ttacatcacc ctgaacgagg acctgagctc
      481 ctggaccgca gcagatgcag tggctcagat cactcaacac aaatgggagg aggctggagt
      541 ggcagaggaa tacaaggcct acctagaggg cacatgcgtg gagacactcc acagattgtt
      601 ggaggaagct cagcaacact cagacccccc aaatacacat gtgacccgtc accccagacc
      661 tgaaggtgaa gtcaccctga ggtgctgggc cctgggcttc taccctgctg acatcaccct
      721 gacctggcag ttgaatgggg aggagctgac ccaggacatg gagcttgtgg agaccaggcc
      781 tgcaggggat ggaaccttcc agaagtgggc agctgtcgtg gtgccttttg gggaggagcc
      841 tagatacaca tgccatgtgt accattaggg gctgcctgag cccctcaccc tgagatggg
//
