LOCUS       NM_001271005            1289 bp    mRNA    linear   ROD 07-AUG-2023
DEFINITION  Mus musculus histocompatibility 2, T region locus, pseudogene
            (H2-T-ps), mRNA.
ACCESSION   NM_001271005
VERSION     NM_001271005.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1289)
  AUTHORS   Tamplin OJ, Cox BJ and Rossant J.
  TITLE     Integrated microarray and ChIP analysis identifies multiple Foxa2
            dependent target genes in the notochord
  JOURNAL   Dev Biol 360 (2), 415-425 (2011)
   PUBMED   22008794
REFERENCE   2  (bases 1 to 1289)
  AUTHORS   Thiagarajan RD, Georgas KM, Rumballe BA, Lesieur E, Chiu HS, Taylor
            D, Tang DT, Grimmond SM and Little MH.
  TITLE     Identification of anchor genes during kidney development defines
            ontological relationships, molecular subcompartments and regulatory
            pathways
  JOURNAL   PLoS One 6 (2), e17286 (2011)
   PUBMED   21386911
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1289)
  AUTHORS   Ohtsuka M, Inoko H, Kulski JK and Yoshimura S.
  TITLE     Major histocompatibility complex (Mhc) class Ib gene duplications,
            organization and expression patterns in mouse strain C57BL/6
  JOURNAL   BMC Genomics 9, 178 (2008)
   PUBMED   18416856
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 1289)
  AUTHORS   Nishimura M, Yokoi N, Miki T, Horikawa Y, Yoshioka H, Takeda J,
            Ohara O and Seino S.
  TITLE     Construction of a multi-functional cDNA library specific for mouse
            pancreatic islets and its application to microarray
  JOURNAL   DNA Res 11 (5), 315-323 (2004)
   PUBMED   15747579
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CT030728.6.
            
            [WARNING] On Sep 22, 2023 this sequence was replaced by
            NM_001271005.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR13422591.191597.1,
                                           SRR13422597.1403072.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849380 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-80                CT030728.6         143031-143110
            81-350              CT030728.6         143281-143550
            351-626             CT030728.6         143764-144039
            627-902             CT030728.6         144572-144847
            903-1018            CT030728.6         144975-145090
            1019-1048           CT030728.6         145268-145297
            1049-1289           CT030728.6         145437-145677
FEATURES             Location/Qualifiers
     source          1..1289
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="17"
                     /map="17 18.93 cM"
     gene            1..1289
                     /gene="H2-T-ps"
                     /gene_synonym="C920025E04Rik; H2-T11"
                     /note="histocompatibility 2, T region locus, pseudogene"
                     /db_xref="GeneID:667803"
                     /db_xref="MGI:MGI:2442805"
     exon            1..80
                     /gene="H2-T-ps"
                     /gene_synonym="C920025E04Rik; H2-T11"
                     /inference="alignment:Splign:2.1.0"
     CDS             20..1024
                     /gene="H2-T-ps"
                     /gene_synonym="C920025E04Rik; H2-T11"
                     /codon_start=1
                     /product="H-2 class I histocompatibility antigen-like
                     precursor"
                     /protein_id="NP_001257934.1"
                     /db_xref="GeneID:667803"
                     /db_xref="MGI:MGI:2442805"
                     /translation="MLLFAHLLQLLVSATVPTQSSSHSLRYFHTVVSRPGLGEPRFII
                     VGYVDDTQFVRFDSDSENPRMEPRARWIEQEGPEYWERETRKARDMGRNFRVNLRTLL
                     GYYNQSKDESHTLQWMYGCDVGPDGRLLRGYCQEAYDGQDYISLNEDLRSWTATNLAS
                     HISKCKSEAVDEAHQQRAYLQGPCVEWLHTYLQLGSETLLRSDPPKAHVTRHPRPEGD
                     VTLRCWALGFYPADITLTWQLNGEELTQDMEFVETRPAGDGTFQKWASVVVPLGKEQN
                     YTCHVYHEGLPEPLTLRWEPPPSTVSNMVIIAVLVVLGAVIVIVAVVAFVMKRRKTQV
                     "
     exon            81..350
                     /gene="H2-T-ps"
                     /gene_synonym="C920025E04Rik; H2-T11"
                     /inference="alignment:Splign:2.1.0"
     exon            351..626
                     /gene="H2-T-ps"
                     /gene_synonym="C920025E04Rik; H2-T11"
                     /inference="alignment:Splign:2.1.0"
     exon            627..902
                     /gene="H2-T-ps"
                     /gene_synonym="C920025E04Rik; H2-T11"
                     /inference="alignment:Splign:2.1.0"
     exon            903..1018
                     /gene="H2-T-ps"
                     /gene_synonym="C920025E04Rik; H2-T11"
                     /inference="alignment:Splign:2.1.0"
     exon            1019..1048
                     /gene="H2-T-ps"
                     /gene_synonym="C920025E04Rik; H2-T11"
                     /inference="alignment:Splign:2.1.0"
     exon            1049..1289
                     /gene="H2-T-ps"
                     /gene_synonym="C920025E04Rik; H2-T11"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 acagacccag ggagtgagga tgttgctttt tgcccacttg ctccagctgc tggtcagcgc
       61 cacagtcccg acccagagta gctcacactc gctgcggtat ttccacaccg tcgtatcccg
      121 gcccggcctc ggagagcccc ggttcatcat tgtcggctac gtggacgaca cgcagttcgt
      181 gcgcttcgac agcgactcgg agaatccgag gatggagcct cgggcgcggt ggattgagca
      241 ggaggggccg gagtattggg agcgggagac tcggaaagcc agggacatgg ggaggaactt
      301 cagagtaaac ctgaggaccc tgctcggcta ctacaatcag agtaaggacg aatctcacac
      361 gctgcagtgg atgtacggct gcgacgtggg gcccgatggg cgcctgctcc gcgggtattg
      421 tcaggaggcc tatgatggcc aggattacat ctccctgaac gaagacctgc gctcctggac
      481 cgcgaccaac ttagcctcgc atatctctaa gtgcaagtca gaggcggtcg atgaggccca
      541 ccaacagagg gcatacctgc aaggtccttg cgtggagtgg ctccatacat acctacagct
      601 gggaagtgag acactgctgc gctcagaccc tccaaaggca catgtgaccc gtcaccccag
      661 acctgaaggt gatgtcaccc tgaggtgctg ggccctgggc ttctatcctg ctgacatcac
      721 cctgacctgg cagttgaatg gggaggagct gacccaggac atggagtttg tggagaccag
      781 gcctgcaggg gatggaacct tccagaagtg ggcatctgtg gtggtgcctc ttgggaagga
      841 gcagaattac acatgccatg tgtaccatga ggggctgcct gagcccctca ccctgagatg
      901 ggagcctcct ccatccactg tctccaacat ggtaatcatt gctgttctgg ttgtccttgg
      961 agctgtgata gtcattgttg ctgtggtggc ttttgtaatg aagaggagga aaacacaggt
     1021 gtaaaaggat gctatgctca tgttctaggc agcaagagct tccagacctc tgactggcct
     1081 cagaaggcat gacaatccct gggggcctgg gactggacct gaggcacaag ggagaccggg
     1141 gttcaattcc tagcactgac atggcaggtg tctgttacta gtaacaaaca gttcatgtct
     1201 catgaatgta gacatgaatg cagctaaagc accaacatac ataatattaa acctttaaaa
     1261 aaataaaagg tgtatgagct ggacaaaca
//
