LOCUS       XM_006523677            1660 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus histocompatibility 2, K1, K region (H2-K1),
            transcript variant X6, mRNA.
ACCESSION   XM_006523677
VERSION     XM_006523677.5
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000083.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_006523677.4.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1660
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="17"
     gene            1..1660
                     /gene="H2-K1"
                     /gene_synonym="H-2K; H-2K(d); H2-D1; H2-K; K-f"
                     /note="histocompatibility 2, K1, K region; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 5 mRNAs, 182 ESTs, 594 long SRA reads, 52 Proteins,
                     and 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 37 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:14972"
                     /db_xref="MGI:MGI:95904"
     CDS             43..1200
                     /gene="H2-K1"
                     /gene_synonym="H-2K; H-2K(d); H2-D1; H2-K; K-f"
                     /codon_start=1
                     /product="H-2 class I histocompatibility antigen, K-W28
                     alpha chain isoform X6"
                     /protein_id="XP_006523740.1"
                     /db_xref="GeneID:14972"
                     /db_xref="MGI:MGI:95904"
                     /translation="MVPCTLLLLLAAALAPTQTRAARAAARGLVRWSGSHRAPPPGPH
                     SLRYFVTAVSRPGLGEPRYMEVGYVDDTEFVRFDSDAENPRYEPRARWMEQEGPEYWE
                     RETQKAKGNEQSFRVDLRTLLGYYNQSKGGSHTIQVISGCEVGSDGRLLRGYQQYAYD
                     GCDYIALNEDLKTWTAADMAALITKHKWEQAGEAERLRAYLEGTCVEWLRRYLKNGNA
                     TLLRTDSPKAHVTHHSRPEDKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRP
                     AGDGTFQKWASVVVPLGKEQYYTCHVYHQGLPEPLTLRWEPPPSTVSNMATVAVLVVL
                     GAAIVTGAVVAFVMKMRRRNTAFLLTGGKGGDYALAPGSQTSDLSLPDCKA"
ORIGIN      
        1 cagcccgcag aactcagaag tcgcgaatcg ccgacaggtg cgatggtacc gtgcacgctg
       61 ctcctgctgt tggcggccgc cctggctccg actcagaccc gcgcggcccg cgcagccgcc
      121 cggggtctgg tgaggtggtc cgggtctcac cgcgcgccgc ccccaggccc acactcgctg
      181 aggtatttcg tcaccgccgt gtcccggccc ggcctcgggg agccccggta catggaagtc
      241 ggctacgtgg acgacacgga gttcgtgcgc ttcgacagcg acgcggagaa tccgagatat
      301 gagccgcggg cgcggtggat ggagcaggag gggcccgagt attgggagcg ggagacacag
      361 aaagccaagg gcaatgagca gagtttccga gtggacctga ggaccctgct cggctactac
      421 aaccagagca agggcggctc tcacactatt caggtgatct ctggctgtga agtggggtcc
      481 gacgggcgac tcctccgcgg gtaccagcag tacgcctacg acggctgcga ttacatcgcc
      541 ctgaacgaag acctgaaaac gtggacggcg gcggacatgg cggcgctgat caccaaacac
      601 aagtgggagc aggctggtga agcagagaga ctcagggcct acctggaggg cacgtgcgtg
      661 gagtggctcc gcagatacct gaagaacggg aacgcgacgc tgctgcgcac agattcccca
      721 aaggcccatg tgacccatca cagcagacct gaagataaag tcaccctgag gtgctgggcc
      781 ctgggcttct accctgctga catcaccctg acctggcagt tgaatgggga ggagctgatc
      841 caggacatgg agcttgtgga gaccaggcct gcaggggatg gaaccttcca gaagtgggca
      901 tctgtggtgg tgcctcttgg gaaggagcag tattacacat gccatgtgta ccatcagggg
      961 ctgcctgagc ccctcaccct gagatgggag cctcctccat ccactgtctc caacatggcg
     1021 accgttgctg ttctggttgt ccttggagct gcaatagtca ctggagctgt ggtggctttt
     1081 gtgatgaaga tgagaaggag aaacacagct tttcttctca caggtggaaa aggaggggac
     1141 tatgctctgg ctccaggctc ccagacctct gatctgtctc tcccagattg taaagcgtga
     1201 agacagctgc ctggagtgga cttggtgaca gacaatgtct tctcatatct cctgtgacat
     1261 ccagagccct cagttctctt tagtcaagtg tctgatgttc cctgtgagcc tatggactca
     1321 atgtgaagaa ctgtggagcc cagtccaccc ctctacacca ggaccctgtc cctgcactgc
     1381 tctgtcttcc cttccacagc caaccttgct ggttcagcca aacactgagg gacatctgta
     1441 gcctgtcagc tccatgctac cctgacctgc aactcctcac ttccacactg agaataataa
     1501 tttgaatgta accttgattg ttatcatctt gacctagggc tgatttcttg ttaatttcat
     1561 ggattgagaa tgcttagagg ttttgtttgt ttgtttgatt gatttgtttt tttgaagaaa
     1621 taaatgatag atgaataaac ttccagaatc tgggtcacta
//
