LOCUS       NM_027901               4551 bp    mRNA    linear   ROD 24-DEC-2024
DEFINITION  Mus musculus general transcription factor IIIC, polypeptide 2, beta
            (Gtf3c2), mRNA.
ACCESSION   NM_027901
VERSION     NM_027901.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4551)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4551)
  AUTHORS   Rodriguez-de la Rosa,L., Sanchez-Calderon,H., Contreras,J.,
            Murillo-Cuesta,S., Falagan,S., Avendano,C., Dopazo,J.,
            Varela-Nieto,I. and Milo,M.
  TITLE     Comparative gene expression study of the vestibular organ of the
            Igf1 deficient mouse using whole-transcript arrays
  JOURNAL   Hear Res 330 (Pt A), 62-77 (2015)
   PUBMED   26341476
REFERENCE   3  (bases 1 to 4551)
  AUTHORS   Yokoyama,S., Ito,Y., Ueno-Kudoh,H., Shimizu,H., Uchibe,K.,
            Albini,S., Mitsuoka,K., Miyaki,S., Kiso,M., Nagai,A., Hikata,T.,
            Osada,T., Fukuda,N., Yamashita,S., Harada,D., Mezzano,V., Kasai,M.,
            Puri,P.L., Hayashizaki,Y., Okado,H., Hashimoto,M. and Asahara,H.
  TITLE     A systems approach reveals that the myogenesis genome network is
            regulated by the transcriptional repressor RP58
  JOURNAL   Dev Cell 17 (6), 836-848 (2009)
   PUBMED   20059953
REFERENCE   4  (bases 1 to 4551)
  AUTHORS   Okazaki,N., Kikuno,R., Ohara,R., Inamoto,S., Koseki,H., Hiraoka,S.,
            Saga,Y., Nagase,T., Ohara,O. and Koga,H.
  TITLE     Prediction of the coding sequences of mouse homologues of KIAA
            gene: III. the complete nucleotide sequences of 500 mouse
            KIAA-homologous cDNAs identified by screening of terminal sequences
            of cDNA clones randomly sampled from size-fractionated libraries
  JOURNAL   DNA Res 10 (4), 167-180 (2003)
   PUBMED   14621295
REFERENCE   5  (bases 1 to 4551)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK083585.1, AK152439.1 and AK012095.1.
            
            On Jan 28, 2006 this sequence version replaced NM_027901.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK159938.1, AK083585.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164137, SAMN01164138
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-235               AK083585.1         2-236
            236-3741            AK152439.1         1-3506
            3742-4551           AK012095.1         2339-3148
FEATURES             Location/Qualifiers
     source          1..4551
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="5"
                     /map="5 17.15 cM"
     gene            1..4551
                     /gene="Gtf3c2"
                     /gene_synonym="1300004C11Rik; 2610510G03Rik; mKIAA0011;
                     TFIIIC110"
                     /note="general transcription factor IIIC, polypeptide 2,
                     beta"
                     /db_xref="GeneID:71752"
                     /db_xref="MGI:MGI:1919002"
     exon            1..261
                     /gene="Gtf3c2"
                     /gene_synonym="1300004C11Rik; 2610510G03Rik; mKIAA0011;
                     TFIIIC110"
                     /inference="alignment:Splign:2.1.0"
     exon            262..525
                     /gene="Gtf3c2"
                     /gene_synonym="1300004C11Rik; 2610510G03Rik; mKIAA0011;
                     TFIIIC110"
                     /inference="alignment:Splign:2.1.0"
     CDS             285..3008
                     /gene="Gtf3c2"
                     /gene_synonym="1300004C11Rik; 2610510G03Rik; mKIAA0011;
                     TFIIIC110"
                     /note="TF3C-beta; TFIIIC 110 kDa subunit; transcription
                     factor IIIC subunit beta; transcription factor IIIC 110
                     kDa subunit; TFIIIC-BETA"
                     /codon_start=1
                     /product="general transcription factor 3C polypeptide 2"
                     /protein_id="NP_082177.2"
                     /db_xref="CCDS:CCDS39053.1"
                     /db_xref="GeneID:71752"
                     /db_xref="MGI:MGI:1919002"
                     /translation="MDTCGVGYVALGEADPVGSMIVVDSPGQEELSQLDVKASETSGV
                     EASIEMSLPPPLPGFEDSSDRRLPPDQESLTRLEQQDLSSEMSKVSNTRASKPSGRRG
                     GRTARGAKRPQQRKPPSTPLVPGLLDQSNPLSTPMPKKRSQKSKGDLLLLKLSKGLDQ
                     PESPHPKRPPEDFETPSGERPRRRAAQVALLYLQELAEELSTALPAPPLSGPKSPKVS
                     SPTKPKKTRQASSQGEEDGSARDEDFVLQVEGEDEEESEAPSENSSDPEPVAPRSTPR
                     GPAAGKQKPHCRGMAPNGLPNYIMAPVWKCLHLTKDLREQHHSFWEFAEWIPVAWKWQ
                     LLSELEAAPYLPQEEKSPLFSVQREGIPEDGTIYRINRFSSITAHPERWDVSFFTGGP
                     LWALDWCPVPEGSAASQYVALFSSPDMNETHPLSQLHSGPGLLQLWGLGTLQQESCPG
                     NRAHFVYGIACDSGCIWDLKFCPSGAWEHPETLRKAPLLPRLGLLALACSDGKVLLFS
                     LPHPEALLAQQPPDAMKPAIYKVQCLATLQVGSVQASDPSECGQCLSLAWMPTRPHHH
                     LAAGYYNGMVVFWNLPTNSPLQRIRLSDGSLKLYPFQCFLAHDQAVRTIQWCKANSHF
                     LVSAGSDRKIKFWDLRRPYEPINCIKRFLSTELSWLLPYNGVTVAQDNCYASYGLCGI
                     HYIDAGYLGFKAYFTAPRKGTVWSLSGSDWLGTVAAGDISGELIAAILPDMASNPINV
                     KKPAERRFPIYKADLIPYQDSPEDQDYSSTSSETPNPPKARTYTETINHHYLLFQDTD
                     LSSFHNLLRREPMLRMQEGEGHSQLCLDRLQLEAIHKVRFSPNLDSYGWLVSGGQSGL
                     VRIHFVRGLTSPLAHRVQLESRANFNAMFQPSFPTEGPGFSPSSHCLLPNP"
     exon            526..847
                     /gene="Gtf3c2"
                     /gene_synonym="1300004C11Rik; 2610510G03Rik; mKIAA0011;
                     TFIIIC110"
                     /inference="alignment:Splign:2.1.0"
     exon            848..1127
                     /gene="Gtf3c2"
                     /gene_synonym="1300004C11Rik; 2610510G03Rik; mKIAA0011;
                     TFIIIC110"
                     /inference="alignment:Splign:2.1.0"
     exon            1128..1222
                     /gene="Gtf3c2"
                     /gene_synonym="1300004C11Rik; 2610510G03Rik; mKIAA0011;
                     TFIIIC110"
                     /inference="alignment:Splign:2.1.0"
     exon            1223..1300
                     /gene="Gtf3c2"
                     /gene_synonym="1300004C11Rik; 2610510G03Rik; mKIAA0011;
                     TFIIIC110"
                     /inference="alignment:Splign:2.1.0"
     exon            1301..1399
                     /gene="Gtf3c2"
                     /gene_synonym="1300004C11Rik; 2610510G03Rik; mKIAA0011;
                     TFIIIC110"
                     /inference="alignment:Splign:2.1.0"
     exon            1400..1627
                     /gene="Gtf3c2"
                     /gene_synonym="1300004C11Rik; 2610510G03Rik; mKIAA0011;
                     TFIIIC110"
                     /inference="alignment:Splign:2.1.0"
     exon            1628..1739
                     /gene="Gtf3c2"
                     /gene_synonym="1300004C11Rik; 2610510G03Rik; mKIAA0011;
                     TFIIIC110"
                     /inference="alignment:Splign:2.1.0"
     exon            1740..1848
                     /gene="Gtf3c2"
                     /gene_synonym="1300004C11Rik; 2610510G03Rik; mKIAA0011;
                     TFIIIC110"
                     /inference="alignment:Splign:2.1.0"
     exon            1849..1874
                     /gene="Gtf3c2"
                     /gene_synonym="1300004C11Rik; 2610510G03Rik; mKIAA0011;
                     TFIIIC110"
                     /inference="alignment:Splign:2.1.0"
     exon            1875..2004
                     /gene="Gtf3c2"
                     /gene_synonym="1300004C11Rik; 2610510G03Rik; mKIAA0011;
                     TFIIIC110"
                     /inference="alignment:Splign:2.1.0"
     exon            2005..2149
                     /gene="Gtf3c2"
                     /gene_synonym="1300004C11Rik; 2610510G03Rik; mKIAA0011;
                     TFIIIC110"
                     /inference="alignment:Splign:2.1.0"
     exon            2150..2311
                     /gene="Gtf3c2"
                     /gene_synonym="1300004C11Rik; 2610510G03Rik; mKIAA0011;
                     TFIIIC110"
                     /inference="alignment:Splign:2.1.0"
     exon            2312..2399
                     /gene="Gtf3c2"
                     /gene_synonym="1300004C11Rik; 2610510G03Rik; mKIAA0011;
                     TFIIIC110"
                     /inference="alignment:Splign:2.1.0"
     exon            2400..2528
                     /gene="Gtf3c2"
                     /gene_synonym="1300004C11Rik; 2610510G03Rik; mKIAA0011;
                     TFIIIC110"
                     /inference="alignment:Splign:2.1.0"
     exon            2529..2681
                     /gene="Gtf3c2"
                     /gene_synonym="1300004C11Rik; 2610510G03Rik; mKIAA0011;
                     TFIIIC110"
                     /inference="alignment:Splign:2.1.0"
     exon            2682..2789
                     /gene="Gtf3c2"
                     /gene_synonym="1300004C11Rik; 2610510G03Rik; mKIAA0011;
                     TFIIIC110"
                     /inference="alignment:Splign:2.1.0"
     exon            2790..4551
                     /gene="Gtf3c2"
                     /gene_synonym="1300004C11Rik; 2610510G03Rik; mKIAA0011;
                     TFIIIC110"
                     /inference="alignment:Splign:2.1.0"
     regulatory      3927..3932
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Gtf3c2"
                     /gene_synonym="1300004C11Rik; 2610510G03Rik; mKIAA0011;
                     TFIIIC110"
                     /note="hexamer: ATTAAA"
     polyA_site      3950
                     /gene="Gtf3c2"
                     /gene_synonym="1300004C11Rik; 2610510G03Rik; mKIAA0011;
                     TFIIIC110"
     regulatory      4008..4013
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Gtf3c2"
                     /gene_synonym="1300004C11Rik; 2610510G03Rik; mKIAA0011;
                     TFIIIC110"
                     /note="hexamer: ATTAAA"
     polyA_site      4030
                     /gene="Gtf3c2"
                     /gene_synonym="1300004C11Rik; 2610510G03Rik; mKIAA0011;
                     TFIIIC110"
ORIGIN      
        1 agaaggccct gcagtgtcct agggccgcgg aagccacgct ccagctcgcg ggcgtcggag
       61 ggctcagtgc cgcgccgcgc tgcattatgg aacacagagt ttaaaagaaa gctcggcagg
      121 aaacgcgttc cagaccaagc ttgcgtttac cttgtctcgg gggcggggca aggaagagcc
      181 gatcaagatt tcgtcataaa accgcgaccc gacaggcggc gccatcttcg aacttggact
      241 tccggaagga ctttggcgcg gggcagccat tttggggggt gctgatggat acctgcgggg
      301 tcggctatgt tgccctgggg gaggccgacc ccgtggggag catgattgtg gtagactctc
      361 ctggacaaga agaactaagc cagctggatg tcaaggcctc agaaacgtcc ggtgtggagg
      421 cttccatcga gatgtcacta cctcctcctt tgcctggatt tgaggattct tctgacagga
      481 ggcttcctcc agatcaggaa agcctcacca ggttggaaca gcaagatctt tcttcagaga
      541 tgtcaaaggt ctcaaacact agggcctcaa agccttccgg gaggagaggt ggtaggacag
      601 caagaggcgc taaaaggcct cagcaacgta aacctccatc tacccctctg gttcctggtc
      661 tcttagatca gtccaaccct ctgtccaccc ccatgcctaa gaaacgaagt caaaagtcca
      721 agggagacct gctactattg aagttgtcca aaggcctaga tcagccagag tctccacatc
      781 caaagaggcc ccccgaggac tttgagaccc cttctgggga acgaccccgc cgaagggctg
      841 cccaagtggc acttctatac cttcaggaac tagctgaaga gctctccaca gccctgcctg
      901 caccgccact gtctggtcct aagagtccca aggtgagcag ccccacgaag ccgaagaaga
      961 cccggcaagc atcctctcag ggtgaagaag acggaagcgc tcgggatgaa gactttgttc
     1021 tccaggtcga gggtgaagat gaggaagaaa gtgaggcccc aagtgagaac tcgtctgatc
     1081 cggagcctgt tgcaccccga agcaccccac gaggacctgc tgcagggaaa cagaaaccac
     1141 attgccgggg catggctccc aatggcttac ccaattacat catggctcct gtttggaagt
     1201 gcctccacct caccaaggac ctccgagaac agcaccattc attctgggag tttgctgagt
     1261 ggattccggt agcctggaag tggcagttgt tatctgaact tgaagcagct ccctacttgc
     1321 cccaggagga gaagtctccc ctgttttctg tacaaaggga agggattcct gaggatggca
     1381 caatctaccg aataaacaga tttagctcga tcacagcaca tccagagcgc tgggatgtgt
     1441 ccttcttcac agggggacca ctctgggctc tggactggtg cccagtgcct gaagggtcag
     1501 cagcttcaca gtatgtggcc cttttctcca gccctgacat gaatgagaca cacccactga
     1561 gccaacttca ttcaggccct gggctgctgc agctctgggg tcttgggaca ttgcagcaag
     1621 aaagctgtcc tggcaatagg gcccactttg tctatgggat tgcttgtgac agtggctgta
     1681 tctgggacct caagttctgc cccagtgggg catgggaaca tccagaaacc cttcggaagg
     1741 ctcctctcct gcctcgcctg ggtctcttgg ctctggcctg ctcagatggg aaggtactgc
     1801 tcttcagcct gccgcatcct gaggccctcc tggcacagca gcctccagat gctatgaagc
     1861 ctgccatcta caaggtccag tgtttggcaa ctcttcaggt agggtctgtg caagcttcag
     1921 acccctctga gtgtggtcag tgccttagcc tggcttggat gcctaccagg cctcaccacc
     1981 acctggctgc tggatactat aatggcatgg tagttttctg gaatcttccc actaactcac
     2041 ccctccaaag gatacggctc tctgatggct ccttaaagct ctatcccttc cagtgtttcc
     2101 tagcccatga ccaggctgtc cgtacaattc agtggtgcaa agctaacagt catttcctgg
     2161 tgtctgcggg gagtgaccgg aaaatcaaat tctgggatct tcgacgacct tatgaaccaa
     2221 taaactgtat caagcgcttc ttgagtacag agctttcctg gctgctcccc tataatggtg
     2281 tcacagtggc tcaagacaac tgttatgcct cttacgggct ctgtggaatt cattacattg
     2341 atgccggtta cctcggtttt aaggcctact ttactgctcc gcgaaaaggc actgtctgga
     2401 gtctttcagg ttcagactgg cttgggacag tagctgcagg agatatatct ggggagctca
     2461 ttgcagctat tttacctgat atggcatcaa atccaatcaa tgtcaagaaa cctgcagaaa
     2521 gacgatttcc tatatataaa gcagatttga taccatacca ggacagcccc gaagaccaag
     2581 actactcctc gacttcctct gagaccccca atcctcccaa agcaagaacc tacactgaaa
     2641 ccatcaacca tcactacttg ctctttcaag atacagatct gagttccttc cacaatctgc
     2701 ttcgtagaga accaatgctt cgcatgcagg aaggagaggg acattctcag ctttgcctgg
     2761 acaggctgca acttgaagct attcacaagg tacgcttcag cccaaacctg gactcctatg
     2821 gatggctggt atctgggggg cagtcagggt tggttcggat ccattttgtt cgtggactca
     2881 cctctccgct ggcccaccgt gtacagcttg aaagccgagc caacttcaat gctatgttcc
     2941 aaccgtcctt tccaactgaa gggcctggtt tctctccaag cagccattgc cttctcccca
     3001 atccctagtc tgggccacac agaactcttg gattgaagtc tgccaagaac aaatggcgcc
     3061 catgcataga gcatagcacc tgggcccttc ctggacagtg atggtgccag gcctaaatct
     3121 ttaggcctac atgccccaaa ctccttaaat ccctctcctt ccacagactt ctatggtcac
     3181 agctccctgc aggtaggggg gctccccctc cacaacaatt cctatgccta aaaccatggc
     3241 tcacaagaaa cactcaggcc aaacctaggc ttgggagtca aattgctcat attgagcata
     3301 ttgtgaagga ggtaaagcta agtaaaggta ctgggtgttt ttgagagcac ttgtgagtgg
     3361 gtgtttggac agtcggaaag gatatcttca tgaaggctcc tgtctatttc cagaattcga
     3421 tgttattgcc ttccgatctc cctcattaga ataaccaaca cacaggcccg atggtaggga
     3481 cagtaattta ttggactgaa gctgctcata acttaacttt aactgaggaa caacataagc
     3541 accctgccag taggacagca gctagttcgt gtttctgctt atgaaatatt cccaatcact
     3601 gacatatgac actacttgaa cactcctaga tagtgttttt aaattttttg aagctgagta
     3661 tagtggtgca tacctgtaat cccagcactt aggaggccga ggtaagagga tcacaagttt
     3721 gcattcagtc tgggctatct cataaaacca aaaagtaaaa aaaaaaaaag taaagaaaag
     3781 aaaaaaaaag atcttcttta tatcaagtca gagtatacct ctcttaattt tactaatggg
     3841 tgttagaaaa tagtcacccc ccctgtggct gccctttcag tacttcacag tagctatcat
     3901 gtgttcccaa ggcatttttc ctctagatta aatatcttta gttatttcaa tcattctttt
     3961 acaagtcatg atttttgatc tttatgatat ggtcacattg ctgacgtatt aaacatgttt
     4021 aaactctgta tagaaagtat ttagaaccca ataatgtatt gttcgctcaa tcaagtcctc
     4081 tgtggatagc agcacctcac atgactgata ctgtcttgaa aacacaggca ggggacacat
     4141 tggagtatac aggctgaagt gtggaaggaa gtagttagac catcttagga aataggaaac
     4201 aggtagcctg tttcctcttg gatgggatgc agtttacatt agtattgcct gaaacaaaac
     4261 ctagacttta gagcactcaa gattggtctg ttatatctgg aaacagtttt ctacctgagt
     4321 agtgtagaag atttgtcaaa cgccagaagt ctttaagaag agagccaagt agtgagtccc
     4381 cttcctatac agaagaggaa gcagacctct aggacagtaa ggtccttaca cagcagaagg
     4441 gcccataact gcattagtgt taggagccaa gtgttatagc actctgttgt gatccagctc
     4501 aggcggtgtc gggcttgctt tttgaactaa taaagaagtg ccttccattg c
//
