LOCUS       XM_036165373            3571 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus general transcription factor II I repeat
            domain-containing 1 (Gtf2ird1), transcript variant X20, mRNA.
ACCESSION   XM_036165373
VERSION     XM_036165373.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000071.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3571
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="5"
     gene            1..3571
                     /gene="Gtf2ird1"
                     /gene_synonym="1700012P16Rik; BEN; Cream1; ESTM9; Gtf2il;
                     GTF3; MusTRD1; Tg(Alb1-Myc)166.8Sst; WBSCR11"
                     /note="general transcription factor II I repeat
                     domain-containing 1; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 10 mRNAs, 54 ESTs, 508
                     long SRA reads, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 48 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:57080"
                     /db_xref="MGI:MGI:1861942"
     CDS             273..3407
                     /gene="Gtf2ird1"
                     /gene_synonym="1700012P16Rik; BEN; Cream1; ESTM9; Gtf2il;
                     GTF3; MusTRD1; Tg(Alb1-Myc)166.8Sst; WBSCR11"
                     /codon_start=1
                     /product="general transcription factor II-I repeat
                     domain-containing protein 1 isoform X15"
                     /protein_id="XP_036021266.1"
                     /db_xref="GeneID:57080"
                     /db_xref="MGI:MGI:1861942"
                     /translation="MALLGKHCDIPTNGCGSERWNSTFARKDELINSLVSALDSMCSA
                     LSKLNTEVACVAVHNESVFVMGTEKGRVFLNTRKELQSDFLRFCRGPLWNDPEAGHPK
                     KVQRCEGGGRSLPRSSLEQCSDVYLLQKMVEEVFDVLYSEAMGRATVVPLPYERLLRE
                     PGLLAVQGLPEGLAFRRPAEYDPKALMAILEHSHRIRFKLRRPPDDGGQDTKALVEMN
                     GISLLPKGSRDCGLHGQASKVAPQDLTPTATPSSMANFLYSTSMPNHTIRELKQEVPT
                     CPLTPSDLGMGWPVPEPHVPSTQDFSDCCGQTPAGPAGPLIQNVHASKRILFSIVHDK
                     SEKWDPFIKEMEDINTLRECVQILFNSRYAEALGLDHMVPVPYRKIACDPEAVEIVGI
                     PDKIPFKRPCTYGVPKLKRILEERHSIHFIIKRMFDERIFTGNKFTKDPMKLEPASPP
                     EDTSTEVCRDSMLDLAGTAWSDMSSVSEDCGPGTSGEIAMLRPIKIEPEELDIIQVTV
                     SDPSPTSEEMTDSLPGHLPSEDSGYGMEMPADKGPSEEPWSEERPAEESPGDVIRPLR
                     KQVEMLFNTKYAKAIGTSEPVKVPYSKFLMHPEELFVLGLPEGISLRRPNCFGIAKLR
                     KILEASNSIQFVIKRPELLTDGVKEPVLDTQERDSWDRLVDETPKRQGLQENYNTRLS
                     RIDIANTLREQVQDLFNKKYGEALGIKYPVQVPYKRIKSNPGSVIIEGLPPGIPFRKP
                     CTFGSQNLERILSVADKIKFTVTRPFQGLIPKPDEDDANRLGEKVILREQVKELFNEK
                     YGEALGLNRPVLVPYKLIRDSPDAVEVKGLPDDIPFRNPNTYDIHRLEKILKAREHVR
                     MVIINQLQPFAEVCNDPKVPEEDDSNKLGKKVILREQVKELFNEKYGEALGLNRPVLV
                     PYKLIRDSPDAVEVKGLPDDIPFRNPNTYDIHRLEKILKAREHVRMVIINQLQPFGDV
                     CNNAKVPAKDNIPKRKRKRVSEGNSVSSSSSSSSSSSNPESVASTNQISLVWPVYMVD
                     YSGLNVQLPGPLDY"
ORIGIN      
        1 caaagagaga acctcccaga gcccgggctc ggcttcgcgc tcgctccgcg ccccgccctc
       61 cgccgcagcc cgcgccgggg gtgggggccc cgcgcagccc ccggccggcc gcccgcaccg
      121 cgtccgccct ccttccctcc ctccctctac tgatcctgtc ccccattccc ggattattaa
      181 ctcagcaacc agaggcgact ggatctaccg agtcctggcc accgggcccg ggccggggcg
      241 cccggagcgc ttggggatcc tgcaaggtga ccatggcctt gctggggaag cactgtgaca
      301 tccccaccaa cggctgtggg tctgagcgct ggaactccac cttcgcccgc aaggacgaac
      361 tcatcaacag tctggtgtcc gccttagact ccatgtgctc ggcgctctcc aagctgaaca
      421 cggaggtggc ctgcgtggcg gtacacaatg agagcgtctt cgtgatgggc accgagaagg
      481 gaagggtgtt tctgaacact cggaaggagc tacagtcaga cttcctcagg ttctgccggg
      541 gacccctgtg gaacgatcca gaagcaggac accctaaaaa ggtgcagcgc tgtgaaggcg
      601 gtggccggag cctcccgcgg tcctctctgg agcagtgctc ggatgtgtac ctgctgcaga
      661 agatggtaga ggaagtgttt gatgttcttt atagtgaggc tatgggcagg gccaccgtgg
      721 tacctttgcc ctatgagagg ctgctcaggg agccggggct actggcggtg caggggctgc
      781 ccgagggcct ggccttccgg aggccagcag agtatgaccc caaggcactc atggccatat
      841 tggagcacag tcaccgaatt cggtttaagc tcaggaggcc tcctgatgac ggtgggcagg
      901 acacgaaggc gctggtggag atgaacggta tctctctgct acccaagggg tcccgagact
      961 gtggtctgca tggccaggcc tccaaggtcg ctccccaaga cctgaccccc accgccaccc
     1021 catcctctat ggccaacttc ctgtacagca cttcgatgcc caaccacacg atccgggaac
     1081 tcaagcagga ggtgccaacc tgcccgttga cccccagcga cctgggcatg ggctggcccg
     1141 tgcctgagcc ccatgtcccc agcacccaag atttctctga ttgctgtgga cagacgcctg
     1201 cagggcctgc tgggcctctc atccagaatg tccatgcttc caagcgcatc ctcttctcca
     1261 tcgtccatga caagtcagag aagtgggatc ccttcatcaa ggaaatggag gacatcaata
     1321 ccctgcggga gtgcgtgcag attctgttta acagcagata cgcggaagcc ctgggcctgg
     1381 accacatggt ccctgtgccc tataggaaga ttgcctgtga ccccgaggct gtggaaattg
     1441 tgggtattcc agacaagatc cccttcaagc gaccctgtac ttacggagtg ccgaagctga
     1501 agaggattct ggaggagcga cacagcattc acttcattat caagagaatg ttcgatgagc
     1561 gcattttcac agggaacaag tttaccaaag accccatgaa gctggagcca gctagcccac
     1621 cagaagacac ttccacagaa gtctgtaggg acagcatgct ggacctggct gggactgctt
     1681 ggtcagacat gagcagcgtc tctgaagact gtgggccagg aacctcagga gagatagcaa
     1741 tgttgaggcc tatcaaaatc gagccagagg agctggacat tattcaggtt acggtctcag
     1801 atccttcacc tacctctgag gagatgactg actcgttacc tgggcatctg ccctcagagg
     1861 attccggtta tgggatggaa atgccggctg acaaaggccc cagtgaagaa ccgtggtcag
     1921 aagagaggcc ggccgaagag agccctggtg acgtgatccg gcccctacgg aagcaggtgg
     1981 agatgctgtt caacacgaaa tatgccaaag ctattggtac ctcagagccg gtcaaggtgc
     2041 cctactccaa gttcctgatg cacccggagg agctgttcgt actgggactg cctgaaggca
     2101 tctctcttcg gagacccaac tgctttggga ttgcaaagct gcggaagatt ctggaagcga
     2161 gcaacagcat ccagtttgtc atcaagagac ccgaactgct cactgacggt gtcaaagaac
     2221 ctgttctgga cactcaagag agggactcct gggaccgtct tgtggacgag accccgaaga
     2281 gacagggcct tcaagaaaat tacaacacca gactctcgcg gatcgacatc gccaacacgc
     2341 ttagggaaca agtccaagac ctgtttaaca agaaatacgg tgaagctctg ggcatcaaat
     2401 acccagtgca ggtgccctac aagagaatca aaagcaaccc aggctcggta atcattgaag
     2461 gcctaccccc cgggatccca ttccgcaaac cctgcacctt tggctcccag aacctggaaa
     2521 ggattctctc tgtggctgac aagatcaagt tcacggtcac caggccattc caaggactta
     2581 tcccaaagcc tgatgaggat gatgccaaca gactggggga gaaggtgatc ctccgagagc
     2641 aggtgaagga gctcttcaat gagaaatacg gtgaggccct gggactgaat cggcctgtgc
     2701 tggtccctta caaactgatc cgggacagcc cagatgccgt ggaggtgaag ggcctcccag
     2761 atgacatccc cttccggaac cccaacacct atgacatcca tcggctggag aagatcctga
     2821 aggccaggga gcatgtgcgg atggtcatca tcaaccagct ccaacccttt gcggaagtct
     2881 gcaatgaccc caaggtgcca gaggaggatg actctaacaa gctcgggaag aaggtgatcc
     2941 tccgagagca ggtgaaggag ctcttcaatg agaaatacgg tgaggccctg ggactgaatc
     3001 ggcctgtgct ggtcccttac aaactgatcc gggacagccc agatgccgtg gaggtgaagg
     3061 gcctcccaga tgacatcccc ttccggaacc ccaacaccta tgacatccat cggctggaga
     3121 agatcctgaa ggccagggag catgtgcgga tggtcatcat caaccagctc caaccttttg
     3181 gggacgtctg caacaatgcc aaggtgccag ccaaagacaa cattcccaag cgcaagagaa
     3241 agagggtctc tgaaggcaac tcagtctcct cttcttcctc ctcttcatct tcgtcctcta
     3301 acccagagtc tgtggcatcc accaaccaga tctccctcgt gtggccagtg tacatggtgg
     3361 actattccgg actaaacgtg cagcttccgg gcccccttga ttattagacc tcagagccga
     3421 atcaggacct caactcaaaa gactaaagga aaatgtaatt tatgtacaaa gtatattcgg
     3481 atatgtatca atgcctttta gtttttccaa tgatttttac actatattcc tgccgccaag
     3541 gcctttttaa ataagtaaag aaaatgaaaa a
//
