LOCUS       XM_011240901            4588 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus general transcription factor II I repeat
            domain-containing 1 (Gtf2ird1), transcript variant X36, mRNA.
ACCESSION   XM_011240901
VERSION     XM_011240901.2
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000071.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jun 22, 2016 this sequence version replaced XM_011240901.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4588
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="5"
     gene            1..4588
                     /gene="Gtf2ird1"
                     /gene_synonym="1700012P16Rik; BEN; Cream1; ESTM9; Gtf2il;
                     GTF3; MusTRD1; Tg(Alb1-Myc)166.8Sst; WBSCR11"
                     /note="general transcription factor II I repeat
                     domain-containing 1; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 6 mRNAs, 37 ESTs, 546
                     long SRA reads, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 11 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:57080"
                     /db_xref="MGI:MGI:1861942"
     CDS             898..3426
                     /gene="Gtf2ird1"
                     /gene_synonym="1700012P16Rik; BEN; Cream1; ESTM9; Gtf2il;
                     GTF3; MusTRD1; Tg(Alb1-Myc)166.8Sst; WBSCR11"
                     /codon_start=1
                     /product="general transcription factor II-I repeat
                     domain-containing protein 1 isoform X30"
                     /protein_id="XP_011239203.1"
                     /db_xref="GeneID:57080"
                     /db_xref="MGI:MGI:1861942"
                     /translation="MSPAPKISLIAVTPAGPAGPLIQNVHASKRILFSIVHDKSEKWD
                     PFIKEMEDINTLRECVQILFNSRYAEALGLDHMVPVPYRKIACDPEAVEIVGIPDKIP
                     FKRPCTYGVPKLKRILEERHSIHFIIKRMFDERIFTGNKFTKDPMKLEPASPPEDTST
                     EVCRDSMLDLAGTAWSDMSSVSEDCGPGTSGEIAMLRPIKIEPEELDIIQVTVSDPSP
                     TSEEMTDSLPGHLPSEDSGYGMEMPADKGPSEEPWSEERPAEESPGDVIRPLRKQVEM
                     LFNTKYAKAIGTSEPVKVPYSKFLMHPEELFVLGLPEGISLRRPNCFGIAKLRKILEA
                     SNSIQFVIKRPELLTDGVKEPVLDTQGISPLPLSGLPPRCHLGPQVLPPHLPSLPTPP
                     PERDSWDRLVDETPKRQGLQENYNTRLSRIDIANTLREQVQDLFNKKYGEALGIKYPV
                     QVPYKRIKSNPGSVIIEGLPPGIPFRKPCTFGSQNLERILSVADKIKFTVTRPFQGLI
                     PKPETKILTTGHEAGKTTRPRRLQQDTWQPDEDDANRLGEKVILREQVKELFNEKYGE
                     ALGLNRPVLVPYKLIRDSPDAVEVKGLPDDIPFRNPNTYDIHRLEKILKAREHVRMVI
                     INQLQPFAEVCNDPKVPEEDDSNKLGKKVILREQVKELFNEKYGEALGLNRPVLVPYK
                     LIRDSPDAVEVKGLPDDIPFRNPNTYDIHRLEKILKAREHVRMVIINQLQPFGDVCNN
                     AKVPAKDNIPKRKRKRVSEGNSVSSSSSSSSSSSNPESVASTNQISLVVKSRGSELHP
                     NSVWPLPLPRAGPSTAPGTGRHWALRGTQPTTEGQAHPLVLPTR"
ORIGIN      
        1 cttgcatggt gggagccgga cctctttggt tggttggggg tgaccatggc cttgctgggg
       61 aagcactgtg acatccccac caacggctgt gggtctgagc gctggaactc caccttcgcc
      121 cgcaaggacg aactcatcaa cagtctggtg tccgccttag actccatgtg ctcggcgctc
      181 tccaagctga acacggaggt ggcctgcgtg gcggtacaca atgagagcgt cttcgtgatg
      241 ggcaccgaga agggaagggt gtttctgaac actcggaagg agctacagtc agacttcctc
      301 aggttctgcc ggggacccct gtggaacgat ccagaagcag gacaccctaa aaaggtgcag
      361 cgctgtgaag gcggtggccg gagcctcccg cggtcctctc tggagcagtg ctcggatgtg
      421 tacctgctgc agaagatggt gaggctatgg gcagggccac cgtggtacct ttgccctatg
      481 agaggctgct cagggagccg gggctactgg cggtgcaggg gctgcccgag ggcctggcct
      541 tccggaggcc agcagagtat gaccccaagg cactcatggc catattggag cacagtcacc
      601 gaattcggtt taagctcagg aggcctcctg atgacggtgg gcaggacacg aaggcgctgg
      661 tggagatgaa cggtatctct ctgctaccca aggggtcccg agactgtggt ctgcatggcc
      721 aggcctccaa ggtcgctccc caagacctga cccccaccgc caccccatcc tctatggcca
      781 acttcctgta cagcacttcg atgcccaacc acacgatccg ggaactcaag caggaggtgc
      841 caacctgccc gttgaccccc agcgacctgg gcatgggctg gcccgtgcct gagccccatg
      901 tccccagcac ccaagatttc tctgattgct gtgacgcctg cagggcctgc tgggcctctc
      961 atccagaatg tccatgcttc caagcgcatc ctcttctcca tcgtccatga caagtcagag
     1021 aagtgggatc ccttcatcaa ggaaatggag gacatcaata ccctgcggga gtgcgtgcag
     1081 attctgttta acagcagata cgcggaagcc ctgggcctgg accacatggt ccctgtgccc
     1141 tataggaaga ttgcctgtga ccccgaggct gtggaaattg tgggtattcc agacaagatc
     1201 cccttcaagc gaccctgtac ttacggagtg ccgaagctga agaggattct ggaggagcga
     1261 cacagcattc acttcattat caagagaatg ttcgatgagc gcattttcac agggaacaag
     1321 tttaccaaag accccatgaa gctggagcca gctagcccac cagaagacac ttccacagaa
     1381 gtctgtaggg acagcatgct ggacctggct gggactgctt ggtcagacat gagcagcgtc
     1441 tctgaagact gtgggccagg aacctcagga gagatagcaa tgttgaggcc tatcaaaatc
     1501 gagccagagg agctggacat tattcaggtt acggtctcag atccttcacc tacctctgag
     1561 gagatgactg actcgttacc tgggcatctg ccctcagagg attccggtta tgggatggaa
     1621 atgccggctg acaaaggccc cagtgaagaa ccgtggtcag aagagaggcc ggccgaagag
     1681 agccctggtg acgtgatccg gcccctacgg aagcaggtgg agatgctgtt caacacgaaa
     1741 tatgccaaag ctattggtac ctcagagccg gtcaaggtgc cctactccaa gttcctgatg
     1801 cacccggagg agctgttcgt actgggactg cctgaaggca tctctcttcg gagacccaac
     1861 tgctttggga ttgcaaagct gcggaagatt ctggaagcga gcaacagcat ccagtttgtc
     1921 atcaagagac ccgaactgct cactgacggt gtcaaagaac ctgttctgga cactcaaggc
     1981 atttccccac tgcccctgtc gggtttgccc cctcgatgcc acctgggacc ccaggtgctc
     2041 cctcctcacc tgccttctct ccccacccca cccccagaga gggactcctg ggaccgtctt
     2101 gtggacgaga ccccgaagag acagggcctt caagaaaatt acaacaccag actctcgcgg
     2161 atcgacatcg ccaacacgct tagggaacaa gtccaagacc tgtttaacaa gaaatacggt
     2221 gaagctctgg gcatcaaata cccagtgcag gtgccctaca agagaatcaa aagcaaccca
     2281 ggctcggtaa tcattgaagg cctacccccc gggatcccat tccgcaaacc ctgcaccttt
     2341 ggctcccaga acctggaaag gattctctct gtggctgaca agatcaagtt cacggtcacc
     2401 aggccattcc aaggacttat cccaaagcct gaaaccaaaa ttctcactac aggacatgaa
     2461 gctgggaaaa ccaccagacc aaggagactg caacaggaca cctggcagcc agatgaggat
     2521 gatgccaaca gactggggga gaaggtgatc ctccgagagc aggtgaagga gctcttcaat
     2581 gagaaatacg gtgaggccct gggactgaat cggcctgtgc tggtccctta caaactgatc
     2641 cgggacagcc cagatgccgt ggaggtgaag ggcctcccag atgacatccc cttccggaac
     2701 cccaacacct atgacatcca tcggctggag aagatcctga aggccaggga gcatgtgcgg
     2761 atggtcatca tcaaccagct ccaacccttt gcggaagtct gcaatgaccc caaggtgcca
     2821 gaggaggatg actctaacaa gctcgggaag aaggtgatcc tccgagagca ggtgaaggag
     2881 ctcttcaatg agaaatacgg tgaggccctg ggactgaatc ggcctgtgct ggtcccttac
     2941 aaactgatcc gggacagccc agatgccgtg gaggtgaagg gcctcccaga tgacatcccc
     3001 ttccggaacc ccaacaccta tgacatccat cggctggaga agatcctgaa ggccagggag
     3061 catgtgcgga tggtcatcat caaccagctc caaccttttg gggacgtctg caacaatgcc
     3121 aaggtgccag ccaaagacaa cattcccaag cgcaagagaa agagggtctc tgaaggcaac
     3181 tcagtctcct cttcttcctc ctcttcatct tcgtcctcta acccagagtc tgtggcatcc
     3241 accaaccaga tctccctcgt ggtaaagtca cgcggatccg aacttcaccc taattctgtg
     3301 tggcctttgc cccttcctcg ggcagggcca tccacagctc caggaactgg gaggcactgg
     3361 gctctgagag ggactcagcc aaccacagag gggcaggcac atccactcgt tttgcccaca
     3421 agatagacgg agggtccgcg caatcagcgc agtgcttgaa gtgtggctat cacctgcgat
     3481 gtgtataaat gacgtcagca ggagccagag ggggaaggtc acgtgacaga actcaacctc
     3541 catcttttgg ctacattgct ttgtttagcc ctttcctgat tcagaagaac tcatgtaaaa
     3601 aaaaaaaaaa acaaaacaaa cacaaacaca aaacccaccc agggtatggt gtcttacgtc
     3661 cacagtccca gtagtagaag ggggaagatc ggcgttcaag gccctctgag gctatatgga
     3721 gactgtctca aagaaaactg gctaaactgg gggcagaggg tgtggcttag tcagcagggt
     3781 acatgctttg catgcatgaa gccctgggtt ctatttgcag ctccatataa actggacctg
     3841 gtggtacacg cctgggatcc taacactgga gaggtagagt caggagaatc aaaaagttca
     3901 aggttagcct cagctacgta gaaagtttga ggctagcctg ggctacatga gactgcttcg
     3961 agaaaaagga atgaaggaaa gaaaagctgt tttgttgttg gtttttgggg tgtttttttt
     4021 ttatcatttt tttctatcat tgactccctc ccttcacccc aggaggtgag atagtgtctg
     4081 tggggtgaga ctgtgtgaac catggtttcc gctcatgctg acgcagccct caatggtgtc
     4141 taatccatgt attgaacaca ggtggggaca atcactatgc tccacctgtg tgacctcggg
     4201 caggtctctt tccctctctg ggcctcagtg gctgcataat aagtaccatt tgaattcatc
     4261 ctcaaagaaa gcgtgctaat tattctggga gttcctccat gtcacctgga gtcctaacgt
     4321 ggtccctctg tcccctcccc ccctctctct agcagtggcc agtgtacatg gtggactatt
     4381 ccggactaaa cgtgcagctt ccgggccccc ttgattatta gacctcagag ccgaatcagg
     4441 acctcaactc aaaagactaa aggaaaatgt aatttatgta caaagtatat tcggatatgt
     4501 atcaatgcct tttagttttt ccaatgattt ttacactata ttcctgccgc caaggccttt
     4561 ttaaataagt aaagaaaatg aaaaagaa
//
