LOCUS       XM_011240889            4663 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus general transcription factor II I repeat
            domain-containing 1 (Gtf2ird1), transcript variant X5, mRNA.
ACCESSION   XM_011240889
VERSION     XM_011240889.2
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000071.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_011240889.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4663
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="5"
     gene            1..4663
                     /gene="Gtf2ird1"
                     /gene_synonym="1700012P16Rik; BEN; Cream1; ESTM9; Gtf2il;
                     GTF3; MusTRD1; Tg(Alb1-Myc)166.8Sst; WBSCR11"
                     /note="general transcription factor II I repeat
                     domain-containing 1; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 6 mRNAs, 43 ESTs, 561
                     long SRA reads, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 11 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:57080"
                     /db_xref="MGI:MGI:1861942"
     CDS             88..3501
                     /gene="Gtf2ird1"
                     /gene_synonym="1700012P16Rik; BEN; Cream1; ESTM9; Gtf2il;
                     GTF3; MusTRD1; Tg(Alb1-Myc)166.8Sst; WBSCR11"
                     /codon_start=1
                     /product="general transcription factor II-I repeat
                     domain-containing protein 1 isoform X1"
                     /protein_id="XP_011239191.1"
                     /db_xref="GeneID:57080"
                     /db_xref="MGI:MGI:1861942"
                     /translation="MALLGKHCDIPTNGCGSERWNSTFARKDELINSLVSALDSMCSA
                     LSKLNTEVACVAVHNESVFVMGTEKGRVFLNTRKELQSDFLRFCRGPLWNDPEAGHPK
                     KVQRCEGGGRSLPRSSLEQCSDVYLLQKMVEEVFDVLYSEAMGRATVVPLPYERLLRE
                     PGLLAVQGLPEGLAFRRPAEYDPKALMAILEHSHRIRFKLRRPPDDGGQDTKALVEMN
                     GISLLPKGSRDCGLHGQASKVAPQDLTPTATPSSMANFLYSTSMPNHTIRELKQEVPT
                     CPLTPSDLGMGWPVPEPHVPSTQDFSDCCGQTPAGPAGPLIQNVHASKRILFSIVHDK
                     SEKWDPFIKEMEDINTLRECVQILFNSRYAEALGLDHMVPVPYRKIACDPEAVEIVGI
                     PDKIPFKRPCTYGVPKLKRILEERHSIHFIIKRMFDERIFTGNKFTKDPMKLEPASPP
                     EDTSTEVCRDSMLDLAGTAWSDMSSVSEDCGPGTSGEIAMLRPIKIEPEELDIIQVTV
                     SDPSPTSEEMTDSLPGHLPSEDSGYGMEMPADKGPSEEPWSEERPAEESPGDVIRPLR
                     KQVEMLFNTKYAKAIGTSEPVKVPYSKFLMHPEELFVLGLPEGISLRRPNCFGIAKLR
                     KILEASNSIQFVIKRPELLTDGVKEPVLDTQGISPLPLSGLPPRCHLGPQVLPPHLPS
                     LPTPPPERDSWDRLVDETPKRQGLQENYNTRLSRIDIANTLREQVQDLFNKKYGEALG
                     IKYPVQVPYKRIKSNPGSVIIEGLPPGIPFRKPCTFGSQNLERILSVADKIKFTVTRP
                     FQGLIPKPETKILTTGHEAGKTTRPRRLQQDTWQPDEDDANRLGEKVILREQVKELFN
                     EKYGEALGLNRPVLVPYKLIRDSPDAVEVKGLPDDIPFRNPNTYDIHRLEKILKAREH
                     VRMVIINQLQPFAEVCNDPKVPEEDDSNKLGKKVILREQVKELFNEKYGEALGLNRPV
                     LVPYKLIRDSPDAVEVKGLPDDIPFRNPNTYDIHRLEKILKAREHVRMVIINQLQPFG
                     DVCNNAKVPAKDNIPKRKRKRVSEGNSVSSSSSSSSSSSNPESVASTNQISLVVKSRG
                     SELHPNSVWPLPLPRAGPSTAPGTGRHWALRGTQPTTEGQAHPLVLPTR"
ORIGIN      
        1 tttttttttt tttggggggg ggtcatcctg taaagaggct ggcttgcatg gtgggagccg
       61 gacctctttg gttggttggg ggtgaccatg gccttgctgg ggaagcactg tgacatcccc
      121 accaacggct gtgggtctga gcgctggaac tccaccttcg cccgcaagga cgaactcatc
      181 aacagtctgg tgtccgcctt agactccatg tgctcggcgc tctccaagct gaacacggag
      241 gtggcctgcg tggcggtaca caatgagagc gtcttcgtga tgggcaccga gaagggaagg
      301 gtgtttctga acactcggaa ggagctacag tcagacttcc tcaggttctg ccggggaccc
      361 ctgtggaacg atccagaagc aggacaccct aaaaaggtgc agcgctgtga aggcggtggc
      421 cggagcctcc cgcggtcctc tctggagcag tgctcggatg tgtacctgct gcagaagatg
      481 gtagaggaag tgtttgatgt tctttatagt gaggctatgg gcagggccac cgtggtacct
      541 ttgccctatg agaggctgct cagggagccg gggctactgg cggtgcaggg gctgcccgag
      601 ggcctggcct tccggaggcc agcagagtat gaccccaagg cactcatggc catattggag
      661 cacagtcacc gaattcggtt taagctcagg aggcctcctg atgacggtgg gcaggacacg
      721 aaggcgctgg tggagatgaa cggtatctct ctgctaccca aggggtcccg agactgtggt
      781 ctgcatggcc aggcctccaa ggtcgctccc caagacctga cccccaccgc caccccatcc
      841 tctatggcca acttcctgta cagcacttcg atgcccaacc acacgatccg ggaactcaag
      901 caggaggtgc caacctgccc gttgaccccc agcgacctgg gcatgggctg gcccgtgcct
      961 gagccccatg tccccagcac ccaagatttc tctgattgct gtggacagac gcctgcaggg
     1021 cctgctgggc ctctcatcca gaatgtccat gcttccaagc gcatcctctt ctccatcgtc
     1081 catgacaagt cagagaagtg ggatcccttc atcaaggaaa tggaggacat caataccctg
     1141 cgggagtgcg tgcagattct gtttaacagc agatacgcgg aagccctggg cctggaccac
     1201 atggtccctg tgccctatag gaagattgcc tgtgaccccg aggctgtgga aattgtgggt
     1261 attccagaca agatcccctt caagcgaccc tgtacttacg gagtgccgaa gctgaagagg
     1321 attctggagg agcgacacag cattcacttc attatcaaga gaatgttcga tgagcgcatt
     1381 ttcacaggga acaagtttac caaagacccc atgaagctgg agccagctag cccaccagaa
     1441 gacacttcca cagaagtctg tagggacagc atgctggacc tggctgggac tgcttggtca
     1501 gacatgagca gcgtctctga agactgtggg ccaggaacct caggagagat agcaatgttg
     1561 aggcctatca aaatcgagcc agaggagctg gacattattc aggttacggt ctcagatcct
     1621 tcacctacct ctgaggagat gactgactcg ttacctgggc atctgccctc agaggattcc
     1681 ggttatggga tggaaatgcc ggctgacaaa ggccccagtg aagaaccgtg gtcagaagag
     1741 aggccggccg aagagagccc tggtgacgtg atccggcccc tacggaagca ggtggagatg
     1801 ctgttcaaca cgaaatatgc caaagctatt ggtacctcag agccggtcaa ggtgccctac
     1861 tccaagttcc tgatgcaccc ggaggagctg ttcgtactgg gactgcctga aggcatctct
     1921 cttcggagac ccaactgctt tgggattgca aagctgcgga agattctgga agcgagcaac
     1981 agcatccagt ttgtcatcaa gagacccgaa ctgctcactg acggtgtcaa agaacctgtt
     2041 ctggacactc aaggcatttc cccactgccc ctgtcgggtt tgccccctcg atgccacctg
     2101 ggaccccagg tgctccctcc tcacctgcct tctctcccca ccccaccccc agagagggac
     2161 tcctgggacc gtcttgtgga cgagaccccg aagagacagg gccttcaaga aaattacaac
     2221 accagactct cgcggatcga catcgccaac acgcttaggg aacaagtcca agacctgttt
     2281 aacaagaaat acggtgaagc tctgggcatc aaatacccag tgcaggtgcc ctacaagaga
     2341 atcaaaagca acccaggctc ggtaatcatt gaaggcctac cccccgggat cccattccgc
     2401 aaaccctgca cctttggctc ccagaacctg gaaaggattc tctctgtggc tgacaagatc
     2461 aagttcacgg tcaccaggcc attccaagga cttatcccaa agcctgaaac caaaattctc
     2521 actacaggac atgaagctgg gaaaaccacc agaccaagga gactgcaaca ggacacctgg
     2581 cagccagatg aggatgatgc caacagactg ggggagaagg tgatcctccg agagcaggtg
     2641 aaggagctct tcaatgagaa atacggtgag gccctgggac tgaatcggcc tgtgctggtc
     2701 ccttacaaac tgatccggga cagcccagat gccgtggagg tgaagggcct cccagatgac
     2761 atccccttcc ggaaccccaa cacctatgac atccatcggc tggagaagat cctgaaggcc
     2821 agggagcatg tgcggatggt catcatcaac cagctccaac cctttgcgga agtctgcaat
     2881 gaccccaagg tgccagagga ggatgactct aacaagctcg ggaagaaggt gatcctccga
     2941 gagcaggtga aggagctctt caatgagaaa tacggtgagg ccctgggact gaatcggcct
     3001 gtgctggtcc cttacaaact gatccgggac agcccagatg ccgtggaggt gaagggcctc
     3061 ccagatgaca tccccttccg gaaccccaac acctatgaca tccatcggct ggagaagatc
     3121 ctgaaggcca gggagcatgt gcggatggtc atcatcaacc agctccaacc ttttggggac
     3181 gtctgcaaca atgccaaggt gccagccaaa gacaacattc ccaagcgcaa gagaaagagg
     3241 gtctctgaag gcaactcagt ctcctcttct tcctcctctt catcttcgtc ctctaaccca
     3301 gagtctgtgg catccaccaa ccagatctcc ctcgtggtaa agtcacgcgg atccgaactt
     3361 caccctaatt ctgtgtggcc tttgcccctt cctcgggcag ggccatccac agctccagga
     3421 actgggaggc actgggctct gagagggact cagccaacca cagaggggca ggcacatcca
     3481 ctcgttttgc ccacaagata gacggagggt ccgcgcaatc agcgcagtgc ttgaagtgtg
     3541 gctatcacct gcgatgtgta taaatgacgt cagcaggagc cagaggggga aggtcacgtg
     3601 acagaactca acctccatct tttggctaca ttgctttgtt tagccctttc ctgattcaga
     3661 agaactcatg taaaaaaaaa aaaaaacaaa acaaacacaa acacaaaacc cacccagggt
     3721 atggtgtctt acgtccacag tcccagtagt agaaggggga agatcggcgt tcaaggccct
     3781 ctgaggctat atggagactg tctcaaagaa aactggctaa actgggggca gagggtgtgg
     3841 cttagtcagc agggtacatg ctttgcatgc atgaagccct gggttctatt tgcagctcca
     3901 tataaactgg acctggtggt acacgcctgg gatcctaaca ctggagaggt agagtcagga
     3961 gaatcaaaaa gttcaaggtt agcctcagct acgtagaaag tttgaggcta gcctgggcta
     4021 catgagactg cttcgagaaa aaggaatgaa ggaaagaaaa gctgttttgt tgttggtttt
     4081 tggggtgttt tttttttatc atttttttct atcattgact ccctcccttc accccaggag
     4141 gtgagatagt gtctgtgggg tgagactgtg tgaaccatgg tttccgctca tgctgacgca
     4201 gccctcaatg gtgtctaatc catgtattga acacaggtgg ggacaatcac tatgctccac
     4261 ctgtgtgacc tcgggcaggt ctctttccct ctctgggcct cagtggctgc ataataagta
     4321 ccatttgaat tcatcctcaa agaaagcgtg ctaattattc tgggagttcc tccatgtcac
     4381 ctggagtcct aacgtggtcc ctctgtcccc tccccccctc tctctagcag tggccagtgt
     4441 acatggtgga ctattccgga ctaaacgtgc agcttccggg cccccttgat tattagacct
     4501 cagagccgaa tcaggacctc aactcaaaag actaaaggaa aatgtaattt atgtacaaag
     4561 tatattcgga tatgtatcaa tgccttttag tttttccaat gatttttaca ctatattcct
     4621 gccgccaagg cctttttaaa taagtaaaga aaatgaaaaa gaa
//
