LOCUS       XM_011240887            4722 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus general transcription factor II I repeat
            domain-containing 1 (Gtf2ird1), transcript variant X4, mRNA.
ACCESSION   XM_011240887
VERSION     XM_011240887.2
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000071.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jun 22, 2016 this sequence version replaced XM_011240887.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4722
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="5"
     gene            1..4722
                     /gene="Gtf2ird1"
                     /gene_synonym="1700012P16Rik; BEN; Cream1; ESTM9; Gtf2il;
                     GTF3; MusTRD1; Tg(Alb1-Myc)166.8Sst; WBSCR11"
                     /note="general transcription factor II I repeat
                     domain-containing 1; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 6 mRNAs, 42 ESTs, 559
                     long SRA reads, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 2 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:57080"
                     /db_xref="MGI:MGI:1861942"
     CDS             147..3560
                     /gene="Gtf2ird1"
                     /gene_synonym="1700012P16Rik; BEN; Cream1; ESTM9; Gtf2il;
                     GTF3; MusTRD1; Tg(Alb1-Myc)166.8Sst; WBSCR11"
                     /codon_start=1
                     /product="general transcription factor II-I repeat
                     domain-containing protein 1 isoform X1"
                     /protein_id="XP_011239189.1"
                     /db_xref="GeneID:57080"
                     /db_xref="MGI:MGI:1861942"
                     /translation="MALLGKHCDIPTNGCGSERWNSTFARKDELINSLVSALDSMCSA
                     LSKLNTEVACVAVHNESVFVMGTEKGRVFLNTRKELQSDFLRFCRGPLWNDPEAGHPK
                     KVQRCEGGGRSLPRSSLEQCSDVYLLQKMVEEVFDVLYSEAMGRATVVPLPYERLLRE
                     PGLLAVQGLPEGLAFRRPAEYDPKALMAILEHSHRIRFKLRRPPDDGGQDTKALVEMN
                     GISLLPKGSRDCGLHGQASKVAPQDLTPTATPSSMANFLYSTSMPNHTIRELKQEVPT
                     CPLTPSDLGMGWPVPEPHVPSTQDFSDCCGQTPAGPAGPLIQNVHASKRILFSIVHDK
                     SEKWDPFIKEMEDINTLRECVQILFNSRYAEALGLDHMVPVPYRKIACDPEAVEIVGI
                     PDKIPFKRPCTYGVPKLKRILEERHSIHFIIKRMFDERIFTGNKFTKDPMKLEPASPP
                     EDTSTEVCRDSMLDLAGTAWSDMSSVSEDCGPGTSGEIAMLRPIKIEPEELDIIQVTV
                     SDPSPTSEEMTDSLPGHLPSEDSGYGMEMPADKGPSEEPWSEERPAEESPGDVIRPLR
                     KQVEMLFNTKYAKAIGTSEPVKVPYSKFLMHPEELFVLGLPEGISLRRPNCFGIAKLR
                     KILEASNSIQFVIKRPELLTDGVKEPVLDTQGISPLPLSGLPPRCHLGPQVLPPHLPS
                     LPTPPPERDSWDRLVDETPKRQGLQENYNTRLSRIDIANTLREQVQDLFNKKYGEALG
                     IKYPVQVPYKRIKSNPGSVIIEGLPPGIPFRKPCTFGSQNLERILSVADKIKFTVTRP
                     FQGLIPKPETKILTTGHEAGKTTRPRRLQQDTWQPDEDDANRLGEKVILREQVKELFN
                     EKYGEALGLNRPVLVPYKLIRDSPDAVEVKGLPDDIPFRNPNTYDIHRLEKILKAREH
                     VRMVIINQLQPFAEVCNDPKVPEEDDSNKLGKKVILREQVKELFNEKYGEALGLNRPV
                     LVPYKLIRDSPDAVEVKGLPDDIPFRNPNTYDIHRLEKILKAREHVRMVIINQLQPFG
                     DVCNNAKVPAKDNIPKRKRKRVSEGNSVSSSSSSSSSSSNPESVASTNQISLVVKSRG
                     SELHPNSVWPLPLPRAGPSTAPGTGRHWALRGTQPTTEGQAHPLVLPTR"
ORIGIN      
        1 caagcatatg gtggcggctg gtgcggaggc tgtgtttggg tggcgtgcgt gcttgacttt
       61 gccttttgcg cttgccttga ctcaagtctg cacaagaatt tggttcccgt tgcagctgta
      121 ccttatgcac atagcctgag gtgaccatgg ccttgctggg gaagcactgt gacatcccca
      181 ccaacggctg tgggtctgag cgctggaact ccaccttcgc ccgcaaggac gaactcatca
      241 acagtctggt gtccgcctta gactccatgt gctcggcgct ctccaagctg aacacggagg
      301 tggcctgcgt ggcggtacac aatgagagcg tcttcgtgat gggcaccgag aagggaaggg
      361 tgtttctgaa cactcggaag gagctacagt cagacttcct caggttctgc cggggacccc
      421 tgtggaacga tccagaagca ggacacccta aaaaggtgca gcgctgtgaa ggcggtggcc
      481 ggagcctccc gcggtcctct ctggagcagt gctcggatgt gtacctgctg cagaagatgg
      541 tagaggaagt gtttgatgtt ctttatagtg aggctatggg cagggccacc gtggtacctt
      601 tgccctatga gaggctgctc agggagccgg ggctactggc ggtgcagggg ctgcccgagg
      661 gcctggcctt ccggaggcca gcagagtatg accccaaggc actcatggcc atattggagc
      721 acagtcaccg aattcggttt aagctcagga ggcctcctga tgacggtggg caggacacga
      781 aggcgctggt ggagatgaac ggtatctctc tgctacccaa ggggtcccga gactgtggtc
      841 tgcatggcca ggcctccaag gtcgctcccc aagacctgac ccccaccgcc accccatcct
      901 ctatggccaa cttcctgtac agcacttcga tgcccaacca cacgatccgg gaactcaagc
      961 aggaggtgcc aacctgcccg ttgaccccca gcgacctggg catgggctgg cccgtgcctg
     1021 agccccatgt ccccagcacc caagatttct ctgattgctg tggacagacg cctgcagggc
     1081 ctgctgggcc tctcatccag aatgtccatg cttccaagcg catcctcttc tccatcgtcc
     1141 atgacaagtc agagaagtgg gatcccttca tcaaggaaat ggaggacatc aataccctgc
     1201 gggagtgcgt gcagattctg tttaacagca gatacgcgga agccctgggc ctggaccaca
     1261 tggtccctgt gccctatagg aagattgcct gtgaccccga ggctgtggaa attgtgggta
     1321 ttccagacaa gatccccttc aagcgaccct gtacttacgg agtgccgaag ctgaagagga
     1381 ttctggagga gcgacacagc attcacttca ttatcaagag aatgttcgat gagcgcattt
     1441 tcacagggaa caagtttacc aaagacccca tgaagctgga gccagctagc ccaccagaag
     1501 acacttccac agaagtctgt agggacagca tgctggacct ggctgggact gcttggtcag
     1561 acatgagcag cgtctctgaa gactgtgggc caggaacctc aggagagata gcaatgttga
     1621 ggcctatcaa aatcgagcca gaggagctgg acattattca ggttacggtc tcagatcctt
     1681 cacctacctc tgaggagatg actgactcgt tacctgggca tctgccctca gaggattccg
     1741 gttatgggat ggaaatgccg gctgacaaag gccccagtga agaaccgtgg tcagaagaga
     1801 ggccggccga agagagccct ggtgacgtga tccggcccct acggaagcag gtggagatgc
     1861 tgttcaacac gaaatatgcc aaagctattg gtacctcaga gccggtcaag gtgccctact
     1921 ccaagttcct gatgcacccg gaggagctgt tcgtactggg actgcctgaa ggcatctctc
     1981 ttcggagacc caactgcttt gggattgcaa agctgcggaa gattctggaa gcgagcaaca
     2041 gcatccagtt tgtcatcaag agacccgaac tgctcactga cggtgtcaaa gaacctgttc
     2101 tggacactca aggcatttcc ccactgcccc tgtcgggttt gccccctcga tgccacctgg
     2161 gaccccaggt gctccctcct cacctgcctt ctctccccac cccaccccca gagagggact
     2221 cctgggaccg tcttgtggac gagaccccga agagacaggg ccttcaagaa aattacaaca
     2281 ccagactctc gcggatcgac atcgccaaca cgcttaggga acaagtccaa gacctgttta
     2341 acaagaaata cggtgaagct ctgggcatca aatacccagt gcaggtgccc tacaagagaa
     2401 tcaaaagcaa cccaggctcg gtaatcattg aaggcctacc ccccgggatc ccattccgca
     2461 aaccctgcac ctttggctcc cagaacctgg aaaggattct ctctgtggct gacaagatca
     2521 agttcacggt caccaggcca ttccaaggac ttatcccaaa gcctgaaacc aaaattctca
     2581 ctacaggaca tgaagctggg aaaaccacca gaccaaggag actgcaacag gacacctggc
     2641 agccagatga ggatgatgcc aacagactgg gggagaaggt gatcctccga gagcaggtga
     2701 aggagctctt caatgagaaa tacggtgagg ccctgggact gaatcggcct gtgctggtcc
     2761 cttacaaact gatccgggac agcccagatg ccgtggaggt gaagggcctc ccagatgaca
     2821 tccccttccg gaaccccaac acctatgaca tccatcggct ggagaagatc ctgaaggcca
     2881 gggagcatgt gcggatggtc atcatcaacc agctccaacc ctttgcggaa gtctgcaatg
     2941 accccaaggt gccagaggag gatgactcta acaagctcgg gaagaaggtg atcctccgag
     3001 agcaggtgaa ggagctcttc aatgagaaat acggtgaggc cctgggactg aatcggcctg
     3061 tgctggtccc ttacaaactg atccgggaca gcccagatgc cgtggaggtg aagggcctcc
     3121 cagatgacat ccccttccgg aaccccaaca cctatgacat ccatcggctg gagaagatcc
     3181 tgaaggccag ggagcatgtg cggatggtca tcatcaacca gctccaacct tttggggacg
     3241 tctgcaacaa tgccaaggtg ccagccaaag acaacattcc caagcgcaag agaaagaggg
     3301 tctctgaagg caactcagtc tcctcttctt cctcctcttc atcttcgtcc tctaacccag
     3361 agtctgtggc atccaccaac cagatctccc tcgtggtaaa gtcacgcgga tccgaacttc
     3421 accctaattc tgtgtggcct ttgccccttc ctcgggcagg gccatccaca gctccaggaa
     3481 ctgggaggca ctgggctctg agagggactc agccaaccac agaggggcag gcacatccac
     3541 tcgttttgcc cacaagatag acggagggtc cgcgcaatca gcgcagtgct tgaagtgtgg
     3601 ctatcacctg cgatgtgtat aaatgacgtc agcaggagcc agagggggaa ggtcacgtga
     3661 cagaactcaa cctccatctt ttggctacat tgctttgttt agccctttcc tgattcagaa
     3721 gaactcatgt aaaaaaaaaa aaaaacaaaa caaacacaaa cacaaaaccc acccagggta
     3781 tggtgtctta cgtccacagt cccagtagta gaagggggaa gatcggcgtt caaggccctc
     3841 tgaggctata tggagactgt ctcaaagaaa actggctaaa ctgggggcag agggtgtggc
     3901 ttagtcagca gggtacatgc tttgcatgca tgaagccctg ggttctattt gcagctccat
     3961 ataaactgga cctggtggta cacgcctggg atcctaacac tggagaggta gagtcaggag
     4021 aatcaaaaag ttcaaggtta gcctcagcta cgtagaaagt ttgaggctag cctgggctac
     4081 atgagactgc ttcgagaaaa aggaatgaag gaaagaaaag ctgttttgtt gttggttttt
     4141 ggggtgtttt ttttttatca tttttttcta tcattgactc cctcccttca ccccaggagg
     4201 tgagatagtg tctgtggggt gagactgtgt gaaccatggt ttccgctcat gctgacgcag
     4261 ccctcaatgg tgtctaatcc atgtattgaa cacaggtggg gacaatcact atgctccacc
     4321 tgtgtgacct cgggcaggtc tctttccctc tctgggcctc agtggctgca taataagtac
     4381 catttgaatt catcctcaaa gaaagcgtgc taattattct gggagttcct ccatgtcacc
     4441 tggagtccta acgtggtccc tctgtcccct ccccccctct ctctagcagt ggccagtgta
     4501 catggtggac tattccggac taaacgtgca gcttccgggc ccccttgatt attagacctc
     4561 agagccgaat caggacctca actcaaaaga ctaaaggaaa atgtaattta tgtacaaagt
     4621 atattcggat atgtatcaat gccttttagt ttttccaatg atttttacac tatattcctg
     4681 ccgccaaggc ctttttaaat aagtaaagaa aatgaaaaag aa
//
