LOCUS       XM_011240885            4848 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus general transcription factor II I repeat
            domain-containing 1 (Gtf2ird1), transcript variant X1, mRNA.
ACCESSION   XM_011240885
VERSION     XM_011240885.3
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000071.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_011240885.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4848
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="5"
     gene            1..4848
                     /gene="Gtf2ird1"
                     /gene_synonym="1700012P16Rik; BEN; Cream1; ESTM9; Gtf2il;
                     GTF3; MusTRD1; Tg(Alb1-Myc)166.8Sst; WBSCR11"
                     /note="general transcription factor II I repeat
                     domain-containing 1; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 6 mRNAs, 46 ESTs, 665
                     long SRA reads, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 41 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:57080"
                     /db_xref="MGI:MGI:1861942"
     CDS             273..3686
                     /gene="Gtf2ird1"
                     /gene_synonym="1700012P16Rik; BEN; Cream1; ESTM9; Gtf2il;
                     GTF3; MusTRD1; Tg(Alb1-Myc)166.8Sst; WBSCR11"
                     /codon_start=1
                     /product="general transcription factor II-I repeat
                     domain-containing protein 1 isoform X1"
                     /protein_id="XP_011239187.1"
                     /db_xref="GeneID:57080"
                     /db_xref="MGI:MGI:1861942"
                     /translation="MALLGKHCDIPTNGCGSERWNSTFARKDELINSLVSALDSMCSA
                     LSKLNTEVACVAVHNESVFVMGTEKGRVFLNTRKELQSDFLRFCRGPLWNDPEAGHPK
                     KVQRCEGGGRSLPRSSLEQCSDVYLLQKMVEEVFDVLYSEAMGRATVVPLPYERLLRE
                     PGLLAVQGLPEGLAFRRPAEYDPKALMAILEHSHRIRFKLRRPPDDGGQDTKALVEMN
                     GISLLPKGSRDCGLHGQASKVAPQDLTPTATPSSMANFLYSTSMPNHTIRELKQEVPT
                     CPLTPSDLGMGWPVPEPHVPSTQDFSDCCGQTPAGPAGPLIQNVHASKRILFSIVHDK
                     SEKWDPFIKEMEDINTLRECVQILFNSRYAEALGLDHMVPVPYRKIACDPEAVEIVGI
                     PDKIPFKRPCTYGVPKLKRILEERHSIHFIIKRMFDERIFTGNKFTKDPMKLEPASPP
                     EDTSTEVCRDSMLDLAGTAWSDMSSVSEDCGPGTSGEIAMLRPIKIEPEELDIIQVTV
                     SDPSPTSEEMTDSLPGHLPSEDSGYGMEMPADKGPSEEPWSEERPAEESPGDVIRPLR
                     KQVEMLFNTKYAKAIGTSEPVKVPYSKFLMHPEELFVLGLPEGISLRRPNCFGIAKLR
                     KILEASNSIQFVIKRPELLTDGVKEPVLDTQGISPLPLSGLPPRCHLGPQVLPPHLPS
                     LPTPPPERDSWDRLVDETPKRQGLQENYNTRLSRIDIANTLREQVQDLFNKKYGEALG
                     IKYPVQVPYKRIKSNPGSVIIEGLPPGIPFRKPCTFGSQNLERILSVADKIKFTVTRP
                     FQGLIPKPETKILTTGHEAGKTTRPRRLQQDTWQPDEDDANRLGEKVILREQVKELFN
                     EKYGEALGLNRPVLVPYKLIRDSPDAVEVKGLPDDIPFRNPNTYDIHRLEKILKAREH
                     VRMVIINQLQPFAEVCNDPKVPEEDDSNKLGKKVILREQVKELFNEKYGEALGLNRPV
                     LVPYKLIRDSPDAVEVKGLPDDIPFRNPNTYDIHRLEKILKAREHVRMVIINQLQPFG
                     DVCNNAKVPAKDNIPKRKRKRVSEGNSVSSSSSSSSSSSNPESVASTNQISLVVKSRG
                     SELHPNSVWPLPLPRAGPSTAPGTGRHWALRGTQPTTEGQAHPLVLPTR"
ORIGIN      
        1 caaagagaga acctcccaga gcccgggctc ggcttcgcgc tcgctccgcg ccccgccctc
       61 cgccgcagcc cgcgccgggg gtgggggccc cgcgcagccc ccggccggcc gcccgcaccg
      121 cgtccgccct ccttccctcc ctccctctac tgatcctgtc ccccattccc ggattattaa
      181 ctcagcaacc agaggcgact ggatctaccg agtcctggcc accgggcccg ggccggggcg
      241 cccggagcgc ttggggatcc tgcaaggtga ccatggcctt gctggggaag cactgtgaca
      301 tccccaccaa cggctgtggg tctgagcgct ggaactccac cttcgcccgc aaggacgaac
      361 tcatcaacag tctggtgtcc gccttagact ccatgtgctc ggcgctctcc aagctgaaca
      421 cggaggtggc ctgcgtggcg gtacacaatg agagcgtctt cgtgatgggc accgagaagg
      481 gaagggtgtt tctgaacact cggaaggagc tacagtcaga cttcctcagg ttctgccggg
      541 gacccctgtg gaacgatcca gaagcaggac accctaaaaa ggtgcagcgc tgtgaaggcg
      601 gtggccggag cctcccgcgg tcctctctgg agcagtgctc ggatgtgtac ctgctgcaga
      661 agatggtaga ggaagtgttt gatgttcttt atagtgaggc tatgggcagg gccaccgtgg
      721 tacctttgcc ctatgagagg ctgctcaggg agccggggct actggcggtg caggggctgc
      781 ccgagggcct ggccttccgg aggccagcag agtatgaccc caaggcactc atggccatat
      841 tggagcacag tcaccgaatt cggtttaagc tcaggaggcc tcctgatgac ggtgggcagg
      901 acacgaaggc gctggtggag atgaacggta tctctctgct acccaagggg tcccgagact
      961 gtggtctgca tggccaggcc tccaaggtcg ctccccaaga cctgaccccc accgccaccc
     1021 catcctctat ggccaacttc ctgtacagca cttcgatgcc caaccacacg atccgggaac
     1081 tcaagcagga ggtgccaacc tgcccgttga cccccagcga cctgggcatg ggctggcccg
     1141 tgcctgagcc ccatgtcccc agcacccaag atttctctga ttgctgtgga cagacgcctg
     1201 cagggcctgc tgggcctctc atccagaatg tccatgcttc caagcgcatc ctcttctcca
     1261 tcgtccatga caagtcagag aagtgggatc ccttcatcaa ggaaatggag gacatcaata
     1321 ccctgcggga gtgcgtgcag attctgttta acagcagata cgcggaagcc ctgggcctgg
     1381 accacatggt ccctgtgccc tataggaaga ttgcctgtga ccccgaggct gtggaaattg
     1441 tgggtattcc agacaagatc cccttcaagc gaccctgtac ttacggagtg ccgaagctga
     1501 agaggattct ggaggagcga cacagcattc acttcattat caagagaatg ttcgatgagc
     1561 gcattttcac agggaacaag tttaccaaag accccatgaa gctggagcca gctagcccac
     1621 cagaagacac ttccacagaa gtctgtaggg acagcatgct ggacctggct gggactgctt
     1681 ggtcagacat gagcagcgtc tctgaagact gtgggccagg aacctcagga gagatagcaa
     1741 tgttgaggcc tatcaaaatc gagccagagg agctggacat tattcaggtt acggtctcag
     1801 atccttcacc tacctctgag gagatgactg actcgttacc tgggcatctg ccctcagagg
     1861 attccggtta tgggatggaa atgccggctg acaaaggccc cagtgaagaa ccgtggtcag
     1921 aagagaggcc ggccgaagag agccctggtg acgtgatccg gcccctacgg aagcaggtgg
     1981 agatgctgtt caacacgaaa tatgccaaag ctattggtac ctcagagccg gtcaaggtgc
     2041 cctactccaa gttcctgatg cacccggagg agctgttcgt actgggactg cctgaaggca
     2101 tctctcttcg gagacccaac tgctttggga ttgcaaagct gcggaagatt ctggaagcga
     2161 gcaacagcat ccagtttgtc atcaagagac ccgaactgct cactgacggt gtcaaagaac
     2221 ctgttctgga cactcaaggc atttccccac tgcccctgtc gggtttgccc cctcgatgcc
     2281 acctgggacc ccaggtgctc cctcctcacc tgccttctct ccccacccca cccccagaga
     2341 gggactcctg ggaccgtctt gtggacgaga ccccgaagag acagggcctt caagaaaatt
     2401 acaacaccag actctcgcgg atcgacatcg ccaacacgct tagggaacaa gtccaagacc
     2461 tgtttaacaa gaaatacggt gaagctctgg gcatcaaata cccagtgcag gtgccctaca
     2521 agagaatcaa aagcaaccca ggctcggtaa tcattgaagg cctacccccc gggatcccat
     2581 tccgcaaacc ctgcaccttt ggctcccaga acctggaaag gattctctct gtggctgaca
     2641 agatcaagtt cacggtcacc aggccattcc aaggacttat cccaaagcct gaaaccaaaa
     2701 ttctcactac aggacatgaa gctgggaaaa ccaccagacc aaggagactg caacaggaca
     2761 cctggcagcc agatgaggat gatgccaaca gactggggga gaaggtgatc ctccgagagc
     2821 aggtgaagga gctcttcaat gagaaatacg gtgaggccct gggactgaat cggcctgtgc
     2881 tggtccctta caaactgatc cgggacagcc cagatgccgt ggaggtgaag ggcctcccag
     2941 atgacatccc cttccggaac cccaacacct atgacatcca tcggctggag aagatcctga
     3001 aggccaggga gcatgtgcgg atggtcatca tcaaccagct ccaacccttt gcggaagtct
     3061 gcaatgaccc caaggtgcca gaggaggatg actctaacaa gctcgggaag aaggtgatcc
     3121 tccgagagca ggtgaaggag ctcttcaatg agaaatacgg tgaggccctg ggactgaatc
     3181 ggcctgtgct ggtcccttac aaactgatcc gggacagccc agatgccgtg gaggtgaagg
     3241 gcctcccaga tgacatcccc ttccggaacc ccaacaccta tgacatccat cggctggaga
     3301 agatcctgaa ggccagggag catgtgcgga tggtcatcat caaccagctc caaccttttg
     3361 gggacgtctg caacaatgcc aaggtgccag ccaaagacaa cattcccaag cgcaagagaa
     3421 agagggtctc tgaaggcaac tcagtctcct cttcttcctc ctcttcatct tcgtcctcta
     3481 acccagagtc tgtggcatcc accaaccaga tctccctcgt ggtaaagtca cgcggatccg
     3541 aacttcaccc taattctgtg tggcctttgc cccttcctcg ggcagggcca tccacagctc
     3601 caggaactgg gaggcactgg gctctgagag ggactcagcc aaccacagag gggcaggcac
     3661 atccactcgt tttgcccaca agatagacgg agggtccgcg caatcagcgc agtgcttgaa
     3721 gtgtggctat cacctgcgat gtgtataaat gacgtcagca ggagccagag ggggaaggtc
     3781 acgtgacaga actcaacctc catcttttgg ctacattgct ttgtttagcc ctttcctgat
     3841 tcagaagaac tcatgtaaaa aaaaaaaaaa acaaaacaaa cacaaacaca aaacccaccc
     3901 agggtatggt gtcttacgtc cacagtccca gtagtagaag ggggaagatc ggcgttcaag
     3961 gccctctgag gctatatgga gactgtctca aagaaaactg gctaaactgg gggcagaggg
     4021 tgtggcttag tcagcagggt acatgctttg catgcatgaa gccctgggtt ctatttgcag
     4081 ctccatataa actggacctg gtggtacacg cctgggatcc taacactgga gaggtagagt
     4141 caggagaatc aaaaagttca aggttagcct cagctacgta gaaagtttga ggctagcctg
     4201 ggctacatga gactgcttcg agaaaaagga atgaaggaaa gaaaagctgt tttgttgttg
     4261 gtttttgggg tgtttttttt ttatcatttt tttctatcat tgactccctc ccttcacccc
     4321 aggaggtgag atagtgtctg tggggtgaga ctgtgtgaac catggtttcc gctcatgctg
     4381 acgcagccct caatggtgtc taatccatgt attgaacaca ggtggggaca atcactatgc
     4441 tccacctgtg tgacctcggg caggtctctt tccctctctg ggcctcagtg gctgcataat
     4501 aagtaccatt tgaattcatc ctcaaagaaa gcgtgctaat tattctggga gttcctccat
     4561 gtcacctgga gtcctaacgt ggtccctctg tcccctcccc ccctctctct agcagtggcc
     4621 agtgtacatg gtggactatt ccggactaaa cgtgcagctt ccgggccccc ttgattatta
     4681 gacctcagag ccgaatcagg acctcaactc aaaagactaa aggaaaatgt aatttatgta
     4741 caaagtatat tcggatatgt atcaatgcct tttagttttt ccaatgattt ttacactata
     4801 ttcctgccgc caaggccttt ttaaataagt aaagaaaatg aaaaagaa
//
