LOCUS       NM_001362987            2522 bp    mRNA    linear   ROD 12-MAY-2024
DEFINITION  Mus musculus glycosyltransferase-like domain containing 1 (Gtdc1),
            transcript variant 3, mRNA.
ACCESSION   NM_001362987 XM_011239089
VERSION     NM_001362987.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2522)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL929120.7, BX293544.7, AL935057.7 and AL844891.7.
            
            On May 4, 2018 this sequence version replaced XM_011239089.2.
            
            Transcript Variant: This variant (3) differs in the 5' UTR compared
            to variant 1. Variants 1-3 all encode the same protein.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: ERR3363657.316778.1,
                                           SRR7974084.20251.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-95                AL929120.7         16841-16935         c
            96-131              BX293544.7         45495-45530         c
            132-324             BX293544.7         10555-10747         c
            325-492             AL935057.7         87719-87886         c
            493-666             AL935057.7         83498-83671         c
            667-981             AL844891.7         124593-124907       c
            982-1091            AL844891.7         81472-81581         c
            1092-1236           AL844891.7         65034-65178         c
            1237-1307           AL844891.7         60804-60874         c
            1308-1399           AL844891.7         60010-60101         c
            1400-2522           AL844891.7         54003-55125         c
FEATURES             Location/Qualifiers
     source          1..2522
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="2"
                     /map="2 27.27 cM"
     gene            1..2522
                     /gene="Gtdc1"
                     /gene_synonym="E330008O22Rik; QTMAN"
                     /note="glycosyltransferase-like domain containing 1"
                     /db_xref="GeneID:227835"
                     /db_xref="MGI:MGI:2444269"
     exon            1..95
                     /gene="Gtdc1"
                     /gene_synonym="E330008O22Rik; QTMAN"
                     /inference="alignment:Splign:2.1.0"
     exon            96..131
                     /gene="Gtdc1"
                     /gene_synonym="E330008O22Rik; QTMAN"
                     /inference="alignment:Splign:2.1.0"
     exon            132..324
                     /gene="Gtdc1"
                     /gene_synonym="E330008O22Rik; QTMAN"
                     /inference="alignment:Splign:2.1.0"
     CDS             146..1483
                     /gene="Gtdc1"
                     /gene_synonym="E330008O22Rik; QTMAN"
                     /EC_number="2.4.1.110"
                     /note="glycosyltransferase-like domain-containing protein
                     1"
                     /codon_start=1
                     /product="tRNA-queuosine alpha-mannosyltransferase"
                     /protein_id="NP_001349916.1"
                     /db_xref="CCDS:CCDS71050.1"
                     /db_xref="GeneID:227835"
                     /db_xref="MGI:MGI:2444269"
                     /translation="MSIVIIEAFYGGSHRQLVELLREELDDCVLYTLPAKKWHWRART
                     AALYFSQNIPSSEHYRTLFASSVLNLTELAALRPDLGKLKKILYFHENQLVYPVKKYQ
                     ERDFQYGYNQILSCLVADVVVFNSSFNMESFLTSIGKFLKLIPDHRPKDLESIIRPKC
                     QVIYFPIRFPDVSRFMPKHKIAHLRRMLSLIGDAAASQSVAPCPQPGQRVSEKSPENC
                     ESKSDEHPDLDAEQEALDNPSVHKSGSLPVSKENLPLDPSTLLCGAEDPQRPLHITWP
                     HRWEHDKDPETFLKILMSLKQLNLNFHVSVLGETFTDTPDIFSEAKKALGSSVLHWGY
                     LPRKEDYFRVLCMADVVISTAKHEFFGVAMLEAVYCGCYPLCPKALVYPEIFPAEYLY
                     STPEQLSKRLKSFCKRPDIIRKHLYKGEVAPFSWAALHGKFRSLLTTEPREDL"
     exon            325..492
                     /gene="Gtdc1"
                     /gene_synonym="E330008O22Rik; QTMAN"
                     /inference="alignment:Splign:2.1.0"
     exon            493..666
                     /gene="Gtdc1"
                     /gene_synonym="E330008O22Rik; QTMAN"
                     /inference="alignment:Splign:2.1.0"
     exon            667..981
                     /gene="Gtdc1"
                     /gene_synonym="E330008O22Rik; QTMAN"
                     /inference="alignment:Splign:2.1.0"
     exon            982..1091
                     /gene="Gtdc1"
                     /gene_synonym="E330008O22Rik; QTMAN"
                     /inference="alignment:Splign:2.1.0"
     exon            1092..1236
                     /gene="Gtdc1"
                     /gene_synonym="E330008O22Rik; QTMAN"
                     /inference="alignment:Splign:2.1.0"
     exon            1237..1307
                     /gene="Gtdc1"
                     /gene_synonym="E330008O22Rik; QTMAN"
                     /inference="alignment:Splign:2.1.0"
     exon            1308..1399
                     /gene="Gtdc1"
                     /gene_synonym="E330008O22Rik; QTMAN"
                     /inference="alignment:Splign:2.1.0"
     exon            1400..2522
                     /gene="Gtdc1"
                     /gene_synonym="E330008O22Rik; QTMAN"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2490..2495
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Gtdc1"
                     /gene_synonym="E330008O22Rik; QTMAN"
                     /note="hexamer: AATAAA"
     polyA_site      2514
                     /gene="Gtdc1"
                     /gene_synonym="E330008O22Rik; QTMAN"
                     /note="major polyA site"
ORIGIN      
        1 ggaggggctc ggcgtcagcg cgtcgccagc tgggctgtcg gtggcctgga gggagccgtg
       61 gaggaggagg aggagaggag gaggaggagg aggaggtaca agattggata tcagttcatc
      121 tggatcagaa ggtttgaaca ggccaatgag tattgtcatc atcgaggcat tttatggagg
      181 ctcccatcga cagctggtag agctgctccg agaagaatta gatgactgcg tgttgtacac
      241 tcttcctgca aagaaatggc actggagagc acgcacagca gccttatact tctcacagaa
      301 tattcccagc agtgagcact acaggaccct ctttgcaagc tcagtactca acctgactga
      361 actggctgcc cttcggcctg atctgggaaa actgaaaaag atcttatact tccatgaaaa
      421 ccagttggtg tatcctgtca agaaatatca ggagagagat tttcaatatg gatacaacca
      481 aattctctcg tgtttggtgg ctgatgttgt ggtattcaat tccagtttta atatggaatc
      541 atttcttact tctattggaa aattcctgaa gctgattcct gatcacaggc ctaaggatct
      601 ggaaagcatt atcagaccca agtgtcaagt tatttatttt cccatcagat ttcctgatgt
      661 gagcagattc atgcccaagc acaaaatagc ccacttaagg aggatgctca gccttattgg
      721 agatgctgct gcatctcagt ctgtggcgcc ttgtccccag ccagggcaga gggtttctga
      781 gaagtcaccg gagaactgtg aatcaaagtc tgatgaacac cctgaccttg atgctgaaca
      841 agaagccctg gacaacccat cagtccataa atcaggctct cttcctgtga gtaaagaaaa
      901 cctgcctctt gatcccagca cccttctgtg tggagctgaa gatccgcaaa gaccgctgca
      961 cattacatgg ccgcacaggt gggagcatga caaagatcca gagacgttct taaagatact
     1021 aatgagtcta aagcagttaa acttgaactt ccatgtctct gtcctcggag agacttttac
     1081 agacacacca gatatatttt cagaagccaa aaaggcactg ggctcttcag tcttgcactg
     1141 gggctactta ccccgtaaag aagactattt ccgcgtactg tgcatggctg acgttgtcat
     1201 ctcaacagcc aagcatgaat tctttggagt agcaatgttg gaagctgtgt actgtggctg
     1261 ctacccactc tgtcccaaag ccttggtcta tcctgagatc tttccagctg agtatctgta
     1321 ttccacacct gaacagcttt caaaacggct caagagtttc tgcaagaggc cagatattat
     1381 aagaaaacat ctttataagg gtgaagtggc tccattttct tgggcagccc tacatggtaa
     1441 attcaggtct ctgctcacaa cagaacccag ggaagatttg tgacagatgg ggctaagtcg
     1501 caaacttgca gcctaaggca gaatctgaag aactttccag agtgtgccca tatttacctg
     1561 atcagagaga aaagaaaatc tgcagaggaa gccgagcctg gctgcttgtc atagctgaca
     1621 cagagccatc tgccacaaac ctgtggcggc ttcagatctc caatccctgc caccacccca
     1681 actcaaatta aatacagatt cctagagacg ttatgatggt tacacatgtc ctcggcatca
     1741 catgtaggag actgttcaaa aaaaaatctg tggcctgttg tataaccgca ctcatgtatc
     1801 ccatatgtgg tgccacattg aatttccggt tgaatccgtt tttatccttt gtactggatg
     1861 acacggagcc tgaattcttt ctttctgccg acacgatggc agccaaactg cagcttcaaa
     1921 cactcacact tggctgagtt tctacctggg ttgccaggtt atcatcggag ccttcttgtg
     1981 tcctcaaagg gccacggggc ctagaaagag gatcagaatg ctactgaact aattgggcag
     2041 ccatctcaaa gctgctgtag gcaaagggct gctgtagcac ttttctttta gcaaattaat
     2101 gactctctgg caaaggagtg tttaagtgaa ggcattaata agggctctgg caggtattcc
     2161 catgattctc agagttccat ttgcattgaa ttaatcttaa agaaacttgc aagataaaca
     2221 gctggaattc ggacaaacat ggcagattca gtgagtgaag tcctctcatc cataaaatga
     2281 acacgagata cttgttttaa aattttttcc ctgtgggtaa aaatagaaaa atcagaatgc
     2341 ttataacaaa acataatttg gtacaaaatt cttcaaaata cttgtatcca actataaata
     2401 tattcttctt gagataagtc acttacgatt cttgctctgt ttgttggtgt aaagatgttt
     2461 taaatggctg gattgtaaaa tacattttta ataaactgcc cgctgcaatt ttaattagca
     2521 ta
//
